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Report for Sequence Feature Glyma.01g052800

Feature Type:gene_model
Chromosome:Gm01
Start:6451907
stop:6456616
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g052800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G26670.1AT Vesicle transport v-SNARE family protein JGI N/AIEA
GO:0006623GO-bp protein targeting to vacuole EnsemblGenomesN/AIEA
GO:0006810GO-bp transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0006888GO-bp ER to Golgi vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0006891GO-bp intra-Golgi vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0006896GO-bp Golgi to vacuole transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0042147GO-bp retrograde transport, endosome to Golgi EnsemblGenomesN/AIEA
GO:0048280GO-bp vesicle fusion with Golgi apparatus EnsemblGenomesN/AIEA
GO:0061025GO-bp membrane fusion EnsemblGenomesN/AIEA
GO:0005789GO-cc endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0012507GO-cc ER to Golgi transport vesicle membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0031201GO-cc SNARE complex EnsemblGenomesN/AIEA
GO:0031902GO-cc late endosome membrane EnsemblGenomesN/AIEA
GO:0000149GO-mf SNARE binding EnsemblGenomesN/AIEA
GO:0005484GO-mf SNAP receptor activity EnsemblGenomesN/AIEA
KOG1666 KOG V-SNARE JGI N/AIEA
PTHR21230Panther VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED JGI N/AIEA
PTHR21230:SF16Panther JGI N/AIEA
PF05008PFAM Vesicle transport v-SNARE protein N-terminus JGI N/AIEA
PF12352PFAM Snare region anchored in the vesicle membrane C-terminus JGI N/AIEA

Expression Patterns of Glyma.01g052800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g052800 not represented in the dataset
Glyma.01g052800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g052800
ParalogEvidenceComments
Glyma.02g111400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g052800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g06320 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.01g052800
>Glyma.01g052800.2 sequence-type=transcript locus=Glyma.01g052800 ID=Glyma.01g052800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
tttccaatttcccatttccaattttcattttttttgctcttttttcaAAAGGGTGTGAGAAGATGAGTGAGGTCTTCGAAGGGTACGAGCGCCAGTACTGTGAACTCTCTGCTAATCTCTCTCGCAAATGCAGTTCTGCCTCTCTTGTTTCTGACCAAGAACAGAAGCCGCAGAAGTTGTCTGAGATCAAAGCGGGGCTAGATGATGCTGATGTTCTGATTCGGAAAATGGACCTTGAAGCGAGAAGTTTACAGCCAAGTGTGAAAGCAATGCTTCTTGCAAAGTTGAGGGAATACAAATCTGATCTAACCAATTTGAAAAAGGAATTTAAAAGGCTAACATCACCTAATGCTGATGAGGCTGCCCGTGAAGAATTGTTGGAGACTGGAATGACAGATACACATTTGGCTTCTGCTGATCAGAGAGAACGATTAACTATGTCCGTGGAGAGATTAAACCAGTCGAGTGAGAGGATTAGGGACAGCCACAGAACCTTGCTGGAGACTGAAGAACTTGGAATCAACATCATCCAAGATTTGCACAGTCAGAGAGAGACTCTACTGAACTCTCATAAAAGGCTTCATGGGATAGATGATGCTATTGACAAGAGTAAGAAGGTTTTAACTACCATGTCACGGAGAATAACTAGAAACAAATGGATCGTTGCATCTGTGATTGGAGCTCTTGTTTTTGCTATAGTTATTATTCTCTTTTACAAGCTATCTCATTAGCTAATATACACAAGATACAACAGGATGGAAGCAATGTTTAATGCTTTTATGTGCTTGGTTTGTATATAGGAATCATATGACTTATGTGACCATGCAATTATTTCCCCATTGTATTGGTAACTTTTCGATGATACATTGCTCTTTATGCTCTTCATTGTGTTTTTCTTTCTGATCTGTAAGAGCATTAACTTAATTGAAAGTAATTTTGTTCAAGCGTGCTCATT
Coding sequences of Glyma.01g052800
>Glyma.01g052800.1 sequence-type=CDS polypeptide=Glyma.01g052800.1.p locus=Glyma.01g052800 ID=Glyma.01g052800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGAGGTCTTCGAAGGGTACGAGCGCCAGTACTGTGAACTCTCTGCTAATCTCTCTCGCAAATGCAGTTCTGCCTCTCTTGTTTCTGACCAAGAACAGAAGCCGCAGAAGTTGTCTGAGATCAAAGCGGGGCTAGATGATGCTGATGTTCTGATTCGGAAAATGGACCTTGAAGCGAGAAGTTTACAGCCAAGTGTGAAAGCAATGCTTCTTGCAAAGTTGAGGGAATACAAATCTGATCTAACCAATTTGAAAAAGGAATTTAAAAGGCTAACATCACCTAATGCTGATGAGGCTGCCCGTGAAGAATTGTTGGAGACTGGAATGACAGATACACATTTGGCTTCTGCTGATCAGAGAGAACGATTAACTATGTCCGTGGAGAGATTAAACCAGTCGAGTGAGAGGATTAGGGACAGCCACAGAACCTTGCTGGAGACTGAAGAACTTGGAATCAACATCATCCAAGATTTGCACAGTCAGAGAGAGACTCTACTGAACTCTCATAAAAGGCTTCATGGGATAGATGATGCTATTGACAAGAGTAAGAAGGTTTTAACTACCATGTCACGGAGAATAACTAGAAACAAATGGATCGTTGCATCTGTGATTGGAGCTCTTGTTTTTGCTATAGTTATTATTCTCTTTTACAAGCTATCTCATTAG

>Glyma.01g052800.2 sequence-type=CDS polypeptide=Glyma.01g052800.2.p locus=Glyma.01g052800 ID=Glyma.01g052800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGTGAGGTCTTCGAAGGGTACGAGCGCCAGTACTGTGAACTCTCTGCTAATCTCTCTCGCAAATGCAGTTCTGCCTCTCTTGTTTCTGACCAAGAACAGAAGCCGCAGAAGTTGTCTGAGATCAAAGCGGGGCTAGATGATGCTGATGTTCTGATTCGGAAAATGGACCTTGAAGCGAGAAGTTTACAGCCAAGTGTGAAAGCAATGCTTCTTGCAAAGTTGAGGGAATACAAATCTGATCTAACCAATTTGAAAAAGGAATTTAAAAGGCTAACATCACCTAATGCTGATGAGGCTGCCCGTGAAGAATTGTTGGAGACTGGAATGACAGATACACATTTGGCTTCTGCTGATCAGAGAGAACGATTAACTATGTCCGTGGAGAGATTAAACCAGTCGAGTGAGAGGATTAGGGACAGCCACAGAACCTTGCTGGAGACTGAAGAACTTGGAATCAACATCATCCAAGATTTGCACAGTCAGAGAGAGACTCTACTGAACTCTCATAAAAGGCTTCATGGGATAGATGATGCTATTGACAAGAGTAAGAAGGTTTTAACTACCATGTCACGGAGAATAACTAGAAACAAATGGATCGTTGCATCTGTGATTGGAGCTCTTGTTTTTGCTATAGTTATTATTCTCTTTTACAAGCTATCTCATTAG
Predicted protein sequences of Glyma.01g052800
>Glyma.01g052800.1.p sequence-type=predicted peptide transcript=Glyma.01g052800.1 locus=Glyma.01g052800 ID=Glyma.01g052800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEVFEGYERQYCELSANLSRKCSSASLVSDQEQKPQKLSEIKAGLDDADVLIRKMDLEARSLQPSVKAMLLAKLREYKSDLTNLKKEFKRLTSPNADEAAREELLETGMTDTHLASADQRERLTMSVERLNQSSERIRDSHRTLLETEELGINIIQDLHSQRETLLNSHKRLHGIDDAIDKSKKVLTTMSRRITRNKWIVASVIGALVFAIVIILFYKLSH*

>Glyma.01g052800.2.p sequence-type=predicted peptide transcript=Glyma.01g052800.2 locus=Glyma.01g052800 ID=Glyma.01g052800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSEVFEGYERQYCELSANLSRKCSSASLVSDQEQKPQKLSEIKAGLDDADVLIRKMDLEARSLQPSVKAMLLAKLREYKSDLTNLKKEFKRLTSPNADEAAREELLETGMTDTHLASADQRERLTMSVERLNQSSERIRDSHRTLLETEELGINIIQDLHSQRETLLNSHKRLHGIDDAIDKSKKVLTTMSRRITRNKWIVASVIGALVFAIVIILFYKLSH*






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