Glyma.01g046200

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.01g046200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.01g046200): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.01g046200

Feature Type:	gene_model
Chromosome:	Gm01
Start:	5327037
stop:	5330677
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01g046200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G14310.1	AT	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	JGI	N/A	IEA
GO:0008152	GO-bp	metabolic process	EnsemblGenomes	N/A	IEA
GO:0016787	GO-mf	hydrolase activity	EnsemblGenomes	N/A	IEA
KOG3085	KOG	Predicted hydrolase (HAD superfamily)	JGI	N/A	IEA
PTHR12725	Panther	HALOACID DEHALOGENASE-LIKE HYDROLASE	JGI	N/A	IEA
PTHR12725:SF5	Panther		JGI	N/A	IEA
PF00702	PFAM	haloacid dehalogenase-like hydrolase	JGI	N/A	IEA

Expression Patterns of Glyma.01g046200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g046200 not represented in the dataset	Glyma.01g046200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Gene model name correspondences to Glyma.01g046200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma01g05490	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.01g046200

Limit To All Plant Sequences

>Glyma.01g046200.2 sequence-type=transcript locus=Glyma.01g046200 ID=Glyma.01g046200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAACACATAGCTTAGTTCTTAACGACGGGGAAGAGAAATGAGAAGATGGGCACCACCTTGATGAGATGCTCCCACGCAAACGCTCTCTTCAGAGCTCTCAAACCCAAACCCCGCAATTCTTCACTGCCACTTTCTTCAATGGCCATCAACAAAGGTGTGACTGTGGATCCAGCTATGATAAAGCAGGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCTGAAAAGCTGCGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTTTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCTAATTTTGACAACCGCTTAAGGAAGCTATTGAAAGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTTGATGAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAGAAGGCAGATAAACTGGGGGCCAATGCTGTGGGGATTGATTGTTGGTTATGGGGTATAGATGTGAAGACATTCTCTGATATACAAATTCGAATTCTTAATTCAGAGGCATAACACTTGATGTGGTTTGTAGCTCTGATTTGATCATGCTGATAACTAGCTAGCATTTTAATTAGGTGGATGACTAACACTGCCCTTCTTAATTTTCTATGCATGATGTAAAAACATATGTGACCACCTTGTTTGCCAAGTTTGGTAAATAATATGTTGCAACCAAAAATGATGATATCCGTTACAAAGGAGACAGGATTTTATCCTCCAGATGTACCATATATCTATCATCCATGACCCTAACATACCGTCCATTGTGAAAGGTCAGGTGTAATGAGAAGAGGATACAAGTTTCTGATTTTCACCTAAATACCTCGGACCTACAAATTACAAAGTGAAGCAACTCCTATGTAATTGCTTTCAATATGACTAGAAACCGTGTTCTCAAGGGTCTGAATCTGATTAATTT

>Glyma.01g046200.3 sequence-type=transcript locus=Glyma.01g046200 ID=Glyma.01g046200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAACACATAGCTTAGTTCTTAACGACGGGGAAGAGAAATGAGAAGATGGGCACCACCTTGATGAGATGCTCCCACGCAAACGCTCTCTTCAGAGCTCTCAAACCCAAACCCCGCAATTCTTCACTGCCACTTTCTTCAATGGCCATCAACAAAGGTAATAGTAATAAGGCATATGATGCATTGCTGTTGGATGCTGGGGGCACCCTATTGCAATTGGCAAAGCCAGTTGAGGAGATTTATGCCACTATTGGATCCAAATATGGTGTGACTGTGGATCCAGCTATGATAAAGCAGGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCTGAAAAGCTGCGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTTTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCTAATTTTGACAACCGCTTAAGGAAGCTATTGAAAGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTTGATGAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAGAAGGCAGATAAACTGGGGGCCAATGCTGTGGGGATTGATTGTTGGTTATGGGGTATAGATGTGAAGACATTCTCTGATATACAAATTCGAATTCTTAATTCAGAGGCATAACACTTGATGTGGTTTGTAGCTCTGATTTGATCATGCTGATAACTAGCTAGCATTTTAATTAGGTGGATGACTAACACTGCCCTTCTTAATTTTCTATGCATGATGTAAAAACATATGTGACCACCTTGTTTGCCAAGTTTGGTAAATAATATGTTGCAACCAAAAATGATGATATCCGTTACAAAGGAGACAGGATTTTATCCTCCAGATGTACCATATATCTATCATCCATGACCCTAACATACCGTCCATTGTGAAAGGTCAGGTGTAATGAGAAGAGGATACAAGTTTCTGATTTTCACCTAAATACCTCGGACCTACAAATTACAAAGTGAAGCAACTCCTATGTAATTGCTTTCAATATGACTAGAAACCGTGTTCTCAAGGGTCTGAATCTGATTAATTT

Coding sequences of Glyma.01g046200

Limit To All Plant Sequences

>Glyma.01g046200.1 sequence-type=CDS polypeptide=Glyma.01g046200.1.p locus=Glyma.01g046200 ID=Glyma.01g046200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCACCACCTTGATGAGATGCTCCCACGCAAACGCTCTCTTCAGAGCTCTCAAACCCAAACCCCGCAATTCTTCACTGCCACTTTCTTCAATGGCCATCAACAAAGGTAATAGTAATAAGGCATATGATGCATTGCTGTTGGATGCTGGGGGCACCCTATTGCAATTGGCAAAGCCAGTTGAGGAGATTTATGCCACTATTGGATCCAAATATGGTGTGACTGTGGATCCAGCTATGATAAAGCAGGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCTGAAAAGCTGCGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTTTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCTAATTTTGACAACCGCTTAAGGAAGCTATTGAAAGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTTGATGAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAGAAGGCAGATAAACTGGGGGCCAATGCTGTGGGGATTGATTGTTGCAGGTTATGGGGTATAGATGTGAAGACATTCTCTGATATACAAATTCGAATTCTTAATTCAGAGGCATAA

>Glyma.01g046200.2 sequence-type=CDS polypeptide=Glyma.01g046200.2.p locus=Glyma.01g046200 ID=Glyma.01g046200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCACCACCTTGATGAGATGCTCCCACGCAAACGCTCTCTTCAGAGCTCTCAAACCCAAACCCCGCAATTCTTCACTGCCACTTTCTTCAATGGCCATCAACAAAGGTGTGACTGTGGATCCAGCTATGATAAAGCAGGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCTGAAAAGCTGCGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTTTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCTAATTTTGACAACCGCTTAAGGAAGCTATTGAAAGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTTGATGAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAGAAGGCAGATAAACTGGGGGCCAATGCTGTGGGGATTGATTGTTGGTTATGGGGTATAGATGTGAAGACATTCTCTGATATACAAATTCGAATTCTTAATTCAGAGGCATAA

>Glyma.01g046200.3 sequence-type=CDS polypeptide=Glyma.01g046200.3.p locus=Glyma.01g046200 ID=Glyma.01g046200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCACCACCTTGATGAGATGCTCCCACGCAAACGCTCTCTTCAGAGCTCTCAAACCCAAACCCCGCAATTCTTCACTGCCACTTTCTTCAATGGCCATCAACAAAGGTAATAGTAATAAGGCATATGATGCATTGCTGTTGGATGCTGGGGGCACCCTATTGCAATTGGCAAAGCCAGTTGAGGAGATTTATGCCACTATTGGATCCAAATATGGTGTGACTGTGGATCCAGCTATGATAAAGCAGGGATTTAAGAGAGCATTTGCTGCTCCGTGGCCTGAAAAGCTGCGCTACCAGGGAGATGGGAGGCCATTTTGGAAACTTGTAGTTTCTGAAGCCACTGGTTGTGGAGATGAAGATTATTTTGAGGAAGTTTATGAGTACTATGCAAAAGGTGATGCGTGGCATCTTCCAGATGGAGCTTTTGAAACAATTACTTTTCTCAAGGATGCTGGAGTTAAGATGGCTGTTGTATCTAATTTTGACAACCGCTTAAGGAAGCTATTGAAAGATCTTAATGTTTTAAATCTGTTTGATGCTGTCATTATATCATCAGAGGTTGGATATGAAAAACCAGATCCAAGAATATTCCAAGCTGCTCTTGATGAAGTAAATGTAGAGGCTTGCAAAGCCTTACACATTGGAGATGATCAGAAGGCAGATAAACTGGGGGCCAATGCTGTGGGGATTGATTGTTGGTTATGGGGTATAGATGTGAAGACATTCTCTGATATACAAATTCGAATTCTTAATTCAGAGGCATAA

Predicted protein sequences of Glyma.01g046200

Limit To All Plant Sequences

>Glyma.01g046200.1.p sequence-type=predicted peptide transcript=Glyma.01g046200.1 locus=Glyma.01g046200 ID=Glyma.01g046200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTTLMRCSHANALFRALKPKPRNSSLPLSSMAINKGNSNKAYDALLLDAGGTLLQLAKPVEEIYATIGSKYGVTVDPAMIKQGFKRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCGDEDYFEEVYEYYAKGDAWHLPDGAFETITFLKDAGVKMAVVSNFDNRLRKLLKDLNVLNLFDAVIISSEVGYEKPDPRIFQAALDEVNVEACKALHIGDDQKADKLGANAVGIDCCRLWGIDVKTFSDIQIRILNSEA*

>Glyma.01g046200.2.p sequence-type=predicted peptide transcript=Glyma.01g046200.2 locus=Glyma.01g046200 ID=Glyma.01g046200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTTLMRCSHANALFRALKPKPRNSSLPLSSMAINKGVTVDPAMIKQGFKRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCGDEDYFEEVYEYYAKGDAWHLPDGAFETITFLKDAGVKMAVVSNFDNRLRKLLKDLNVLNLFDAVIISSEVGYEKPDPRIFQAALDEVNVEACKALHIGDDQKADKLGANAVGIDCWLWGIDVKTFSDIQIRILNSEA*

>Glyma.01g046200.3.p sequence-type=predicted peptide transcript=Glyma.01g046200.3 locus=Glyma.01g046200 ID=Glyma.01g046200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTTLMRCSHANALFRALKPKPRNSSLPLSSMAINKGNSNKAYDALLLDAGGTLLQLAKPVEEIYATIGSKYGVTVDPAMIKQGFKRAFAAPWPEKLRYQGDGRPFWKLVVSEATGCGDEDYFEEVYEYYAKGDAWHLPDGAFETITFLKDAGVKMAVVSNFDNRLRKLLKDLNVLNLFDAVIISSEVGYEKPDPRIFQAALDEVNVEACKALHIGDDQKADKLGANAVGIDCWLWGIDVKTFSDIQIRILNSEA*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain