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Report for Sequence Feature Glyma.01g044200

Feature Type:gene_model
Chromosome:Gm01
Start:4872768
stop:4876635
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g044200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G14360.1AT UDP-galactose transporter 3 JGI N/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0072334GO-bp UDP-galactose transmembrane transport EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0030173GO-cc integral component of Golgi membrane EnsemblGenomesN/AIEA
GO:0030176GO-cc integral component of endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0005459GO-mf UDP-galactose transmembrane transporter activity EnsemblGenomesN/AIEA
KOG1581 KOG UDP-galactose transporter related protein JGI N/AIEA
PTHR10778Panther SOLUTE CARRIER FAMILY 35 MEMBER B JGI N/AIEA
PTHR10778:SF10Panther SOLUTE CARRIER FAMILY 35 MEMBER B1 JGI N/AIEA
PF08449PFAM UAA transporter family JGI N/AIEA

Expression Patterns of Glyma.01g044200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g044200
ParalogEvidenceComments
Glyma.02g019400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g044200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g05170 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g044200
>Glyma.01g044200.1 sequence-type=CDS polypeptide=Glyma.01g044200.1.p locus=Glyma.01g044200 ID=Glyma.01g044200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGCTCACGGCGGCGGGCTCCGCCGAGTCCTTGTTCTCGCCTTCTGCGTCGCTGGAATCTGGTCGGCATACATCTACCAAGGCGTTCTGCAGGAAAATGTGTCGACGAAGCGATTCGACGGTGAAAGGTTCGAGCACCTTGCGTTTCTGAACTTGGCACAGAATGTGGTGTGTTTAATCTGGTCTTTTATAATGATAAAGATGTGGTCTAGTGGAAATTCTGGTGGTGCTCCTTGGTGGAGTTATTGGAGCGCTGGAATTACCAACACCATTGGTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGGTGCTGGCGAAGTCCTCTAAAATGATTCCAGTTATGCTGATGGGTACTCTGGTATATGGTATAAGATACACTTTTCCAGAATACCTTTGTACTTTTCTTGTTGCTGGAGGGGTATCAACATTTGCACTTCTAAAGACTAGCTCAAAGACTATCAGCAAGCTGGCACATCCAAATGCTCCCCTTGGATATGGGTTGTGTTTCCTGAACCTTGCTTTTGATGGATTTACCAATGCAACTCAGGATTCTTTAAAAGCAAGGTATCCAAAAACAAGTGCTTGGGATATTATGCTGGGCATGAATTTATGGGGAACCATATACAATATGATTTACATGTTTGGATGGCCCCGTGCCAGTGGATTTGAGGCAGTTCGCTTTTGCCAGCAGCATCCAGAGGCAGCATGGGATATTTTTCTCTACTGCTGCTGTGGTGCTGTGGGCCAAAATTTCATCTTCTTGACTATAAGCCGGTTTGGCTCTTTGGCTAACACTACCATCACTACCACTCGCAAATTTGTAAGCATTGTGGTATCTTCTCTATTGAGTGGAAATCCCCTCTCTACAAAGCAATGGGGGTGTGTTTTCATGGTGTTCTCAGGATTGTCTTATCAGATCTACCTCAAGTGGCAGAAGTTGCAGAGATTGCAGAAGAAAAGAAAAGCTGTGTGA
Predicted protein sequences of Glyma.01g044200
>Glyma.01g044200.1.p sequence-type=predicted peptide transcript=Glyma.01g044200.1 locus=Glyma.01g044200 ID=Glyma.01g044200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEAHGGGLRRVLVLAFCVAGIWSAYIYQGVLQENVSTKRFDGERFEHLAFLNLAQNVVCLIWSFIMIKMWSSGNSGGAPWWSYWSAGITNTIGPAMGIEALKYISYPAQVLAKSSKMIPVMLMGTLVYGIRYTFPEYLCTFLVAGGVSTFALLKTSSKTISKLAHPNAPLGYGLCFLNLAFDGFTNATQDSLKARYPKTSAWDIMLGMNLWGTIYNMIYMFGWPRASGFEAVRFCQQHPEAAWDIFLYCCCGAVGQNFIFLTISRFGSLANTTITTTRKFVSIVVSSLLSGNPLSTKQWGCVFMVFSGLSYQIYLKWQKLQRLQKKRKAV*






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