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Report for Sequence Feature Glyma.01g038800

Feature Type:gene_model
Chromosome:Gm01
Start:4162465
stop:4166783
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g038800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10430.1AT protein phosphatase 2A-2 JGI N/AIEA
GO:0006470GO-bp protein dephosphorylation EnsemblGenomesN/AIEA
GO:0004721GO-mf phosphoprotein phosphatase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
KOG0371 KOG Serine/threonine protein phosphatase 2A, catalytic subunit JGI N/AIEA
PTHR11668Panther SERINE/THREONINE PROTEIN PHOSPHATASE JGI N/AIEA
PTHR11668:SF21Panther SERINE/THREONINE-PROTEIN PHOSPHATASE 2A CATALYTIC SUBUNIT BETA ISOFORM JGI N/AIEA
PF00149PFAM Calcineurin-like phosphoesterase JGI N/AIEA

Expression Patterns of Glyma.01g038800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g038800
ParalogEvidenceComments
Glyma.02g025900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g038800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g04570 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.01g038800
>Glyma.01g038800.2 sequence-type=transcript locus=Glyma.01g038800 ID=Glyma.01g038800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ggagcgaaacaaagaagaaagaaaagaaaagagaaaaggacagaaacaaaCAGACGCAGAGCGCGGAACCAAATGAAATGATTGAGAAGAGAGCGAAGAAAAAAAACAGAGCCAAACCAAACCCCACCGTCCCCGAAACGGTTCGTTTTGCCCTTCTTCGGAACCCTCCCTTCCGCGCCGCTGCTGCTGCTCCGGTCGCCGTCGGCGATTCTCCGGTAACCGAACACCATCGATCCGTCAGGAGCCTCGGATCTCGGATCTGAGcgaaacgaatcgaaacgaaacgaaacgaTGCCGTCTCATGCGGATCTGGACCGGCAGATCGAGCATCTGATGGAGTGCAAGCCTCTGCCGGAAGCCGATGTGAAGGCGCTGTGCGATCAGGCGAGAGCGATTCTCGTGGAGGAGTGGAACGTTCAGCCGGTGAAGTGCCCCGTCACCATCTGCGGCGACATTCACGGCCAGTTCTACGATCTCATCGAGCTCTTTCGGATAGGAGGAAACGCTCCCGATACTAATTACCTCTTTATGGGCGATTATGTAGATCGTGGGTACTATTCAGTGGAGACTGTCACGCTTTTGGTGGCCTTGAAAGTTCGTTATAGAGATAGAATTACAATCCTTAGGGGAAATCATGAGAGCCGTCAAATCACTCAAGTGTATGGCTTCTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCTGGATATACATTTGGACAGGATATAGCTGCTCAGTTCAATCATACCAATGGTCTATCCTTGATATCTAGAGCTCACCAGCTTGTCATGGAAGGATTCAATTGGTGCCAGGTGACTGACTGATCTAATATTTTGACTCAGTACCGTTTAAGTATTGGTTTCTTTCATTTTAAGGATACCCATTACATTATATGTATCGACATTGACTTTTATTTTTGATGAATCTTTAAGGACAAGAATGTGGTGACTGTTTTTAGTGCACCCAATTACTGTTACCGATGTGGGAACATGGCTGCCATACTAGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCCCGACAAATTGAGCCCGACACCACACGAAAGACACCAGATTATTTTTTGTAACTTCATATAACCCTTTGTTTGTAAGCTACTGCTTTATGCTGTTACTGTAGATGTGTCTTTAAGGAGAGAAGAGTTTCACTGTTTAAGTGGGACGGTTATCATCAACATAATTCTTTCTTTTGGAGTTTGTctgctgttgctgctgctgcCGTCTTATTTGGACAAGAAACAAATAGAAATTGACACAATTGGTGTTTGTATATTTTTGATAGGAGGAAGCGGCAATAACATGATATATCATGTGCTGTAATTTTTTCTTAAATTAAATCTCAAGTTAGAGAGCAGATTTTTGAGTTCTGACCATCATGTTCATTTGAGACTGTTGATGGTGACAGATGCAGGTGTTGATTTTTTTCTTCTTTTTCTTATTTTATTATCGAATGATATGATATTTTAGGGGTGGAGGGTTGATTGGAAATGGTTGCTTCGAGAAATAGGGAGCTTGGGCTGTGCttttttttt
Coding sequences of Glyma.01g038800
>Glyma.01g038800.1 sequence-type=CDS polypeptide=Glyma.01g038800.1.p locus=Glyma.01g038800 ID=Glyma.01g038800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGTCTCATGCGGATCTGGACCGGCAGATCGAGCATCTGATGGAGTGCAAGCCTCTGCCGGAAGCCGATGTGAAGGCGCTGTGCGATCAGGCGAGAGCGATTCTCGTGGAGGAGTGGAACGTTCAGCCGGTGAAGTGCCCCGTCACCATCTGCGGCGACATTCACGGCCAGTTCTACGATCTCATCGAGCTCTTTCGGATAGGAGGAAACGCTCCCGATACTAATTACCTCTTTATGGGCGATTATGTAGATCGTGGGTACTATTCAGTGGAGACTGTCACGCTTTTGGTGGCCTTGAAAGTTCGTTATAGAGATAGAATTACAATCCTTAGGGGAAATCATGAGAGCCGTCAAATCACTCAAGTGTATGGCTTCTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCTGGATATACATTTGGACAGGATATAGCTGCTCAGTTCAATCATACCAATGGTCTATCCTTGATATCTAGAGCTCACCAGCTTGTCATGGAAGGATTCAATTGGTGCCAGGACAAGAATGTGGTGACTGTTTTTAGTGCACCCAATTACTGTTACCGATGTGGGAACATGGCTGCCATACTAGAAATTGGAGAGAATATGGATCAGAATTTTCTGCAGTTTGATCCAGCTCCCCGACAAATTGAGCCCGACACCACACGAAAGACACCAGATTATTTTTTGTAA

>Glyma.01g038800.2 sequence-type=CDS polypeptide=Glyma.01g038800.2.p locus=Glyma.01g038800 ID=Glyma.01g038800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCGTCTCATGCGGATCTGGACCGGCAGATCGAGCATCTGATGGAGTGCAAGCCTCTGCCGGAAGCCGATGTGAAGGCGCTGTGCGATCAGGCGAGAGCGATTCTCGTGGAGGAGTGGAACGTTCAGCCGGTGAAGTGCCCCGTCACCATCTGCGGCGACATTCACGGCCAGTTCTACGATCTCATCGAGCTCTTTCGGATAGGAGGAAACGCTCCCGATACTAATTACCTCTTTATGGGCGATTATGTAGATCGTGGGTACTATTCAGTGGAGACTGTCACGCTTTTGGTGGCCTTGAAAGTTCGTTATAGAGATAGAATTACAATCCTTAGGGGAAATCATGAGAGCCGTCAAATCACTCAAGTGTATGGCTTCTACGATGAATGCTTGAGAAAGTATGGAAATGCCAATGTCTGGAAATTCTTTACCGATTTGTTTGATTATTTACCTCTGACCGCCCTTATTGAGAGTCAGATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGATCGCTGTGGTTGGGGAATATCTCCACGTGGTGCTGGATATACATTTGGACAGGATATAGCTGCTCAGTTCAATCATACCAATGGTCTATCCTTGATATCTAGAGCTCACCAGCTTGTCATGGAAGGATTCAATTGGTGCCAGGTGACTGACTGA
Predicted protein sequences of Glyma.01g038800
>Glyma.01g038800.1.p sequence-type=predicted peptide transcript=Glyma.01g038800.1 locus=Glyma.01g038800 ID=Glyma.01g038800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPSHADLDRQIEHLMECKPLPEADVKALCDQARAILVEEWNVQPVKCPVTICGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGFNWCQDKNVVTVFSAPNYCYRCGNMAAILEIGENMDQNFLQFDPAPRQIEPDTTRKTPDYFL*

>Glyma.01g038800.2.p sequence-type=predicted peptide transcript=Glyma.01g038800.2 locus=Glyma.01g038800 ID=Glyma.01g038800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPSHADLDRQIEHLMECKPLPEADVKALCDQARAILVEEWNVQPVKCPVTICGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGFNWCQVTD*






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