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Report for Sequence Feature Glyma.01g028900

Feature Type:gene_model
Chromosome:Gm01
Start:3060271
stop:3064492
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g028900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10670.1AT ATP-citrate lyase A-1 JGI N/AIEA
GO:0006085GO-bp acetyl-CoA biosynthetic process EnsemblGenomesN/AIEA
GO:0006633GO-bp fatty acid biosynthetic process EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0009346GO-cc citrate lyase complex EnsemblGenomesN/AIEA
GO:0003878GO-mf ATP citrate synthase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
KOG1254 KOG ATP-citrate lyase JGI N/AIEA
PTHR23118Panther ATP-CITRATE SYNTHASE JGI N/AIEA
PF08442PFAM ATP-grasp domain JGI N/AIEA
PWY-5172SoyCyc9 acetyl-CoA biosynthesis III (from citrate) Plant Metabolic Network ISS
PWY-5173SoyCyc9 superpathway of acetyl-CoA biosynthesis Plant Metabolic Network ISS
GN7V-60578SoyCyc9-rxn ATP citrate synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.01g028900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g028900 not represented in the dataset
Glyma.01g028900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g028900
ParalogEvidenceComments
Glyma.02g036300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g028900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g03530 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g028900
>Glyma.01g028900.1 sequence-type=CDS polypeptide=Glyma.01g028900.1.p locus=Glyma.01g028900 ID=Glyma.01g028900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGCGTAAGAAGATCAGAGAGTATGACTCAAAGAGGTTGTTGAAGGAGCACTTTAAGAGACTTTCTGGCAAGGAGTTGCCGATCAAGTCTGCACAAATTACTGCATCAACTGATTTCACTGAGCTACAAGAGAAGGAACCCTGGCTTTCATCTTCTAAATTGGTTGTGAAACCTGACATGTTATTTGGAAAGCGTGGCAAAAGTGGTTTGGTTGCCTTAAATTTGGATTTTGCACAAGTTGTTTCGTTTGTGAAGGAGCGTCTTGGAAAAGAGGTTGAGATGAGTGGATGCAAAGGACCCATAACAACTTTCATTGTCGAACCTTTCATCCCACACAATGAAGAGTTTTACCTTAACATTGTCTCCGAGAGACTTGGGAACAGCATAAGCTTTTCAGAATGTGGAGGAATTGAAATTGAAGACAACTGGGATAAGGTTAAGACTGCATTTGTTCCAACAGGAGTGTCTCTTACGTCAGAAATTGTTGCCCCACTTGTTGCAACCCTTCCCTTGGAGATCAAGGGAGAAATTGAGGAGTTTCTCAAAGTGGTTTTCACTCTGTTTCAAGACCTGGATTTTACTTTCTTAGAGATGAATCCTTTCACATTGGTTGATGGAAAGCCTTATCCTTTGGATATGAGAGGCGAGCTAGATGACACTGCTGCTTTCAAGAACTTCAAGAAATGGGGAGACATTGAATTTCCACTGCCATTTGGAAGGGTTATGAGTGCCACCGAGTCTTTCATTCATGGATTAGATGAAAAGACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCAAAGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATTTATGCTGATACGGTAGGAGATCTTGGCTTTGCATCTGAGCTTGGAAACTATGCTGAATACAGTGGTGCACCCAAAGAAGAGGAGGTCTTGCAGTACGCCAGAGTTGTAATTGATTGTGCAACTGCAAACCCTGATGACCAGAAGAGAGCTCTTGTGATAGGAGGAGGCATAGCCAACTTTACTGATGTTGCTGCCACATTTAGTGGTATAATTCGGGCATTGAAGGAGAAGGAGTCAAAATTGAAAGCAGCAAGGATGCACATCTTTGTGAGGAGAGGGGGTCCCAACTACCAGAAGGGTCTAGCTTTGATGCGAGCGCTTGGAGAGGATATTGGCATCCCCATTGAGGTTTATGGACCTGAAGCCACAATGACTGGTATATGCAAAGAGGCAATACAGTTCATTACTGCTGCCGCTTAA
Predicted protein sequences of Glyma.01g028900
>Glyma.01g028900.1.p sequence-type=predicted peptide transcript=Glyma.01g028900.1 locus=Glyma.01g028900 ID=Glyma.01g028900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MARKKIREYDSKRLLKEHFKRLSGKELPIKSAQITASTDFTELQEKEPWLSSSKLVVKPDMLFGKRGKSGLVALNLDFAQVVSFVKERLGKEVEMSGCKGPITTFIVEPFIPHNEEFYLNIVSERLGNSISFSECGGIEIEDNWDKVKTAFVPTGVSLTSEIVAPLVATLPLEIKGEIEEFLKVVFTLFQDLDFTFLEMNPFTLVDGKPYPLDMRGELDDTAAFKNFKKWGDIEFPLPFGRVMSATESFIHGLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGFASELGNYAEYSGAPKEEEVLQYARVVIDCATANPDDQKRALVIGGGIANFTDVAATFSGIIRALKEKESKLKAARMHIFVRRGGPNYQKGLALMRALGEDIGIPIEVYGPEATMTGICKEAIQFITAAA*






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