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Report for Sequence Feature Glyma.01g028000

Feature Type:gene_model
Chromosome:Gm01
Start:2923915
stop:2927479
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g028000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G70530.1AT cysteine-rich RLK (RECEPTOR-like protein kinase) 3 JGI N/AIEA
GO:0006468GO-bp protein phosphorylation EnsemblGenomesN/AIEA
GO:0006468GO-bp protein phosphorylation JGI N/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity EnsemblGenomesN/AIEA
GO:0004672GO-mf protein kinase activity JGI N/AIEA
GO:0004674GO-mf protein serine/threonine kinase activity EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
KOG0198 KOG MEKK and related serine/threonine protein kinases JGI N/AIEA
PTHR24420Panther LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE JGI N/AIEA
PTHR24420:SF433Panther JGI N/AIEA
PF01657PFAM Salt stress response/antifungal JGI N/AIEA
PF07714PFAM Protein tyrosine kinase JGI N/AIEA

Expression Patterns of Glyma.01g028000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g028000
ParalogEvidenceComments
Glyma.02g037200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g028000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g03410 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g028000
>Glyma.01g028000.1 sequence-type=CDS polypeptide=Glyma.01g028000.1.p locus=Glyma.01g028000 ID=Glyma.01g028000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCCCTTGCATCGTTTTTTCTTATCTTCCTTTGTTACCATGCACTTCCTGCTCTTGCTGATCCAAGTGCCACGGAGGTAGCAGTGTTGAGCACCAACACAACAGCCCCAATACCTCAGCGACAAGCTTTCTTAACAAACTTCTATGATGCCTTGGAAGCCTTAACCGCTTTGGTTACAAGGCAAAAGTATGCTCTTATTGTTAAAGGGACTACTCAAAATAATGCCACTGTCTATGCTTTTGGTGAGTGCGCGAAAGATCTTACAAAACCAGATTGTGATGTGTGCTTTGCACAAGAGGCATTAACGGTGGCATGTTTTTCTTTGATGGGTGCTTTCTTATTTAGCCCTCAGGACTTGACTGTTTGTGGAACCGAAGATTTTTGTGGGAATTGGAGTGTGTATAAGGCCAATACTGTGGAGTTGGTGAGAAATTTGAGCATTGAAGCACCAAAGAATGAAGGGTTCTTTGTGGGGTATAAGTTTGTGAATGGCAGTGCCTGTCAGAACTGTTTGGATGAAGCTGTCACTAGGATTAATTCTTGTGCTCCAAAAGTAGAAGGGAAGGCATTGAATGTTGGGTGTTACTTGAGGTATTCCATACACAATTTCTATAATAGTTCAAACAACAATGCCCCTCAAGAAAATCACGCTAGGACACACAAATCTTGCTACAATTGTGGCCGGCTGCAGCATCTGCTTCCCTGGCTTCTGCTGATTGTTGCAACTATGATTTTCTTTGTGAGGACAAAATTACTGAAGCGGAGGAGAGAAAGAAGACAATTTGGTGCACTTTTTGACACGGTGAACAAGTCCAAGCTAAATGGAGCTCTGCCAGATGGAACTACCATGGCTATAAAAAGGCTTAGCTTCAACACATCACAATGGGCATATCATTTCTTCAATGAGGTCAATTTGATCAGTGGCATTCATCACAAAAATCTAGTGAAGCTTTTAGGGTGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATTTGTGCCTAATCACAGCCTCTATGATCACCTATCTGGTAGAAGGAATTCTCAACAGTTGACATGGGAACCAACATTCTCATTGATGATAACTTCACACCCTAGATTGCTGGTTTTGGACTTGCCAGATTATTTCCAGAAGACAAGTCTCACCTTAGCACAGCCATTTGTGGCACATTCTCTAAAATTAGCCCTTCTGGGTTATATGGCTCCAGAATATGTAGTGCTAGGGAAGTTAACTGAGAAAGCAGATGTCTACAGTTTTGGGGTTCTAATTATGGAAATTATATCCGGCAAGAAGAGCAAATCCTTTGTTTGGAGCCTTTATGGATCAAACAGGCTATGTAACATTGTTGATCCAATCCTAGAGGGAAATTATCCGGCAGAGGTAGCATGCAAACTCCTTAAGATAGGGTTGCTTTTAGTAGTGGAAATGATCAACAACAACCATGAAATTACTCGGCCAACACAACCACCATTTCTTAGTTGTAGTAGTGCAGAATTCAGCAAATCTATTTTACAAGGAGAGAGTTTTCAGCCTAGATCTATGAAGCACCGACACCGACACCGGATACGACACGGACACGTGCTTGAAAGTTTATATGCTATTTATATCCTGGTTTTACTTTCTGATTGA
Predicted protein sequences of Glyma.01g028000
>Glyma.01g028000.1.p sequence-type=predicted peptide transcript=Glyma.01g028000.1 locus=Glyma.01g028000 ID=Glyma.01g028000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSLASFFLIFLCYHALPALADPSATEVAVLSTNTTAPIPQRQAFLTNFYDALEALTALVTRQKYALIVKGTTQNNATVYAFGECAKDLTKPDCDVCFAQEALTVACFSLMGAFLFSPQDLTVCGTEDFCGNWSVYKANTVELVRNLSIEAPKNEGFFVGYKFVNGSACQNCLDEAVTRINSCAPKVEGKALNVGCYLRYSIHNFYNSSNNNAPQENHARTHKSCYNCGRLQHLLPWLLLIVATMIFFVRTKLLKRRRERRQFGALFDTVNKSKLNGALPDGTTMAIKRLSFNTSQWAYHFFNEVNLISGIHHKNLVKLLGCSITGPESLLVYEFVPNHSLYDHLSGRRNSQQLTWEPTFSLMITSHPRLLVLDLPDYFQKTSLTLAQPFVAHSLKLALLGYMAPEYVVLGKLTEKADVYSFGVLIMEIISGKKSKSFVWSLYGSNRLCNIVDPILEGNYPAEVACKLLKIGLLLVVEMINNNHEITRPTQPPFLSCSSAEFSKSILQGESFQPRSMKHRHRHRIRHGHVLESLYAIYILVLLSD*






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