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Report for Sequence Feature Glyma.01g021200

Feature Type:gene_model
Chromosome:Gm01
Start:2148822
stop:2155157
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g021200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G22610.2AT Di-glucose binding protein with Kinesin motor domain JGI N/AIEA
GO:0007018GO-bp microtubule-based movement EnsemblGenomesN/AIEA
GO:0007018GO-bp microtubule-based movement JGI N/AIEA
GO:0005871GO-cc kinesin complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003774GO-mf motor activity EnsemblGenomesN/AIEA
GO:0003777GO-mf microtubule motor activity EnsemblGenomesN/AIEA
GO:0003777GO-mf microtubule motor activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008017GO-mf microtubule binding EnsemblGenomesN/AIEA
GO:0008017GO-mf microtubule binding JGI N/AIEA
GO:0016887GO-mf ATPase activity EnsemblGenomesN/AIEA
KOG0239 KOG Kinesin (KAR3 subfamily) JGI N/AIEA
PTHR24115Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24115:SF171Panther KINESIN-LIKE PROTEIN KIF22 JGI N/AIEA
PF00225PFAM Kinesin motor domain JGI N/AIEA
PF11721PFAM Di-glucose binding within endoplasmic reticulum JGI N/AIEA

Expression Patterns of Glyma.01g021200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01g021200
ParalogEvidenceComments
Glyma.09g200800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01g021200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g02620 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01g021200
>Glyma.01g021200.1 sequence-type=CDS polypeptide=Glyma.01g021200.1.p locus=Glyma.01g021200 ID=Glyma.01g021200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGATCCGACTCAATCGAACGACGTTCAGCAATACCCACAAACCCTAATCTCAGAGCCTAAAGATTCTTCAATGCACGACGCCAACGAGTCCTTGTTCGATTCGATGGTTTGCGACTCCAGTTCAAGACTGGTCCCAACTGGGCTTACGAGATCTGGCAACGCAGAAGAGGAGTGTTTCATGTTTGTAAATGCGGGAGGGGATGCTTTTAGTGAAGCAGCTGGTGGAATAACGTTCCTGGGTGACACCTATTTTGATGGTGGCAACGTTATGCGTACCAATGAGCAAATAGTGGAGGGTGGAGACTACCCATTTATCTACCAATCAGCTCGGTTGGGAAGCTTTTGTTATAGGTTTGCTAATCTTCCTCCTGGAGACTACGTTGTTGATCTTCATTTTGTGGAGATCATTAACATAAATGGGCCAAAAGGAATGAGGGTGTTCAATGTATACATCCAAGATGAAAAGGTTCTATCTGAATTGGATATCTATGCAGTTGTTGGAGCCAATAAGCCATTACAGATGGTTGATTCAAGGGTGTCTGTTAAGGATGATGGGGTTATTCTCATAAGATTTGAAAGTATATCTGGAAGCCCAGTTGTTAGTGGGATTTGCATTAGAAGAGCAACGAAGGCGTCAGTTCCACAAGTGACAAGTGATTACATTAAATGTAGCTCCTGTGCTGCACAGATTGAAATTCCTTCATCACAGATGAAAGTTATGCAGGCAAAGTCTACAGCAAAGTACAAGAGCAAGATAAAAGAGCTCACAATGCAGTGCGATCTCAAGGCAAAAGAATGCTATGAGGCATGGATGTCATTAACAGCAAAAAATGAGCAATTGGAGGCAGTCCAGATGGAACTTGACAAAGTGACATTTAAGTTACTCACAACTGATCAAACTGTAGAGAAACAAGCTGAAAGCCTGAGGAATATTTCTAATAGGTATGAGCTTGATAAGAAGAAATGGGCAGAAGCAATTAACAGTTTACAAGAAAAAATTAAGTTGATGAAGAGTGATTATTCAAAACTTTCCTTTGAAGCGCATGAATGTGTTGATTCAATCCCCGAATTAAATAAGATGGTTTTTGCAGTTCAGGAATTGGTTAAGCAGTGTGAAGATCTCAAAGTGAAGTACAGCGAAGAGATGGCAAAGAGAAAGAAACTCTTCAATGAAGTTCAAGAGGCTAAAGGGAACATTAGGGTTTTCTGTCGATGTCGTCCATTGAATAAGGCTGAAATCTCAGCTGGAAGCAATACAGTTGTGGATTTTGATGCAGCAAAGGAAGGTTGCCTTGGAATTTTGACAAGTGGCTCCACCAAAAAATCTTTCAGATTTGACAGAGTTTATACACCAAAAGATGATCAAGTTGATGTTTTTGCTGATGCATCATCAATGGTAATCTCTGTACTGGATGGCTACAATGTTTGCATCTTTGCTTATGGGCAAACAGGAACAGGGAAGACATTCACCATGGAAGGAACACAGCAGAATAGAGGAGTAAATTACAGGACTCTTGAGCACTTGTTTAAAGTTAGTAAGGAAAGGAGTGAAACATTTTCATATGACATATCTGTTAGTGTGATAGAGGTTTACAATGAACAAATCAGAGACTTATTGGCTACAGGACAAACATCAAAGCGGTTGGAGATAAAACAAGCTTCTGAAGGATTTCATCATGTTCCTGGTGTTGTAGAAGCCAGGATTGATAACATAAATGAAGTGTGGAATGTACTGCAGGTCGGAAATAATGCTAGAGCAGTTGGAAGTAATAACGTTAATGAGCACAGCAGTCGATCTCACTGCCTGCTTTGTGTAACAGTAAAGGCTAAAAATTTGTTGAGTGGCGAATCTACCAAGAGCAAGCTTTGGCTTGTGGATTTGGCAGGTAGTGAGAGACTTGCAAAGACTGATGTGCAAGGGGAACGGCTTAAGGAAGCACAAAATATCAATCGATCTCTTTCTGCCCTTGGAGATGTAATATCCGCTTTAGCAGCGAAAAGTAGTCACATTCCATATAGGAACTCTAAACTGACACATTTACTTCAAGACTCACTAGGAGGTGACTCCAAAACTTTGATGTTTGTACAAATAAGTCCATCAGACCAGGACGTAGGTGAGACACTGAGCTCACTTAATTTTGCAACTAGAGTGAGGGGTGTTGAGTTAGGTCCTGTTAAGAAGCAAATTGATACAAGTGAAGTTCAAAAGATGAAAGCAATGCTTGAAAAAGCACGGAGTGAGTGCAGAATTAAAGATGAATCTATGCGAAAACTTGAAGAAAATTTGCAAAGCTTGGAGAGTAAGGCCAAAGGCAAGGATCAAATTTACAAAAATCTACAAGAAAAGATTCAAGAACTTGAGGGACAGATTGAGTTGAAAAGAGCCATGCAAAATGACTCAGAGAAAAAAATCTCTCAATTATCTGCCAAATTGAGAGGGAAAGAAGAAACCTGCGGTACTCTTCAACAAAAGGTGAAAGAGCTAGAGAAAAAGATGAAAGAACAACTGCAGTCAGAGTCAGCAAGTTTTCAACAGAAGGTTTGGGATCTAGAGAAAAAACTGGAAGATCAGATGCAAGGGTCTGAGTCTGAATCTGCCATTTTGAAAGATAAGATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCTTGCTTCGTCAACAGATGAAGGAACTGGAGGACAGGTACCGAGAGCGAGAGCAACAGTGGCAACAAACTCATTCTTTTGTGGATGCAGTAAAAGCAGCCACACCAGATGTATGTAAAAGCTGCATGAGGGAAGAATGTCCAAGTGAGATTGAGACTGGCATTTTAAGGTGTTCAGACTCGGTAAACCGCCAGATAAGTCAAGGTTCTTCTTTGTTCAAAGGGAATGATTCCACTCATAAGATAAGCCAAGGTTCTTTGTTCAAAGAGAATGATTCCACTCATAAGATAAGAAGCAAAAGAAGCAATGATGAAAACAACTTTGTCATGCCATCATCATTATTACATGATAGAAGAGTCGCAAGGAAATCTGATCCACCAAAAATAGTAAGGGGTGTGAGGCCAACACCAAGGCCAGTCACTGCTAATCCAGCCCCAGTGTCTCACAAGAGAGGTAGCACAAGCAGAGATCAGGTTCAAGGAATCAAAGAGAGGGACACTAAGAAGAAAATTTGGTCAAGATAG
Predicted protein sequences of Glyma.01g021200
>Glyma.01g021200.1.p sequence-type=predicted peptide transcript=Glyma.01g021200.1 locus=Glyma.01g021200 ID=Glyma.01g021200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPTQSNDVQQYPQTLISEPKDSSMHDANESLFDSMVCDSSSRLVPTGLTRSGNAEEECFMFVNAGGDAFSEAAGGITFLGDTYFDGGNVMRTNEQIVEGGDYPFIYQSARLGSFCYRFANLPPGDYVVDLHFVEIININGPKGMRVFNVYIQDEKVLSELDIYAVVGANKPLQMVDSRVSVKDDGVILIRFESISGSPVVSGICIRRATKASVPQVTSDYIKCSSCAAQIEIPSSQMKVMQAKSTAKYKSKIKELTMQCDLKAKECYEAWMSLTAKNEQLEAVQMELDKVTFKLLTTDQTVEKQAESLRNISNRYELDKKKWAEAINSLQEKIKLMKSDYSKLSFEAHECVDSIPELNKMVFAVQELVKQCEDLKVKYSEEMAKRKKLFNEVQEAKGNIRVFCRCRPLNKAEISAGSNTVVDFDAAKEGCLGILTSGSTKKSFRFDRVYTPKDDQVDVFADASSMVISVLDGYNVCIFAYGQTGTGKTFTMEGTQQNRGVNYRTLEHLFKVSKERSETFSYDISVSVIEVYNEQIRDLLATGQTSKRLEIKQASEGFHHVPGVVEARIDNINEVWNVLQVGNNARAVGSNNVNEHSSRSHCLLCVTVKAKNLLSGESTKSKLWLVDLAGSERLAKTDVQGERLKEAQNINRSLSALGDVISALAAKSSHIPYRNSKLTHLLQDSLGGDSKTLMFVQISPSDQDVGETLSSLNFATRVRGVELGPVKKQIDTSEVQKMKAMLEKARSECRIKDESMRKLEENLQSLESKAKGKDQIYKNLQEKIQELEGQIELKRAMQNDSEKKISQLSAKLRGKEETCGTLQQKVKELEKKMKEQLQSESASFQQKVWDLEKKLEDQMQGSESESAILKDKIKELERKLKEQEQSSMSLLRQQMKELEDRYREREQQWQQTHSFVDAVKAATPDVCKSCMREECPSEIETGILRCSDSVNRQISQGSSLFKGNDSTHKISQGSLFKENDSTHKIRSKRSNDENNFVMPSSLLHDRRVARKSDPPKIVRGVRPTPRPVTANPAPVSHKRGSTSRDQVQGIKERDTKKKIWSR*






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