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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma.01g015100

Feature Type:gene_model
Chromosome:Gm01
Start:1496846
stop:1500010
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01g015100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G35490.1AT Plastid-lipid associated protein PAP / fibrillin family protein JGI N/AIEA
GO:0009507GO-cc chloroplast EnsemblGenomesN/AIEA
GO:0009507GO-cc chloroplast JGI N/AIEA
GO:0009534GO-cc chloroplast thylakoid EnsemblGenomesN/AIEA
GO:0009535GO-cc chloroplast thylakoid membrane EnsemblGenomesN/AIEA
GO:0009536GO-cc plastid EnsemblGenomesN/AIEA
GO:0009579GO-cc thylakoid EnsemblGenomesN/AIEA
GO:0010287GO-cc plastoglobule EnsemblGenomesN/AIEA
GO:0005198GO-mf structural molecule activity JGI N/AIEA
PF04755PFAM PAP_fibrillin JGI N/AIEA

Expression Patterns of Glyma.01g015100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01g015100 not represented in the dataset
Glyma.01g015100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.01g015100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma01g01910 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.01g015100
>Glyma.01g015100.2 sequence-type=transcript locus=Glyma.01g015100 ID=Glyma.01g015100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGGTTCATTTTCATCACTTTAGTTATTTGTGGTTATAAAATATTGTGGTAGTAATACTAATAACCAGTGACTAAGCAAAAATGGTTCAGATATCAGTTTCGGTGGTTTCACTCTATCGCCACCCAGTTCCGATGGCTCTCCTCGCCGTCACTTCGCGCGCTCCCTTCCTCTTCTCCCCAAACCCTAAACCActttctccatcctctttctactcccacctctctctctctcctcgctctcCCAGGTTCCCTTCTCTCCGCTTCCGCTCTGCCACCGGAGACGCCAGCGACGCCGGCAAGCCCGCCGGTAAGATCTCCGACGAGTGGGGCGAGGACTACGATCCCGAGGCCGAAGCATTGACCTCCAAGCTTCCCGACTCGGACCCTCCCAAGGACGAGGACGAGTGGCAGGAAGGAGGGGCGCCCGACGCCGGCGGCTACGTCGACGGCGGGAACGGAACTCCGGTCACCGGAGCTGAGGATCCGGCGGAGGAGGAGGTGGACGATAAGTTGGAGGCGCTGAAGCGTGCTTTGGTGGATACTTTGTATGGGACCGAGTTAGGGATTCGGGCCGGGTCGGAGGTTCGAGCTGAGGTATCCGAATTGGTGAGTCAGTTGGAAGCGGCGAATCCTACACTCGCCCCCGTGGAAGAACCTGCCCTTCTCAATGGGAATTGGGTGTTGCTGTACACTGCATCTTCTGAACTGTTGCCTCTTCTAGCCGCGGGAAGATTGCCTTTGTTGAAGGTGGACAAGATTACACAAACAATTGATACTAGTAGCTCCACTATTATAAACTCCACAACATTGTCTAGCCCTTTTGCATCCTTGTCTTTCAGTGCATCTGCCTCATTTGAAGTTCGAACCCCTACGAGAATTCAGGTACTCTGATGAAAACCTTCGTATTTTACAAAAACAGTTTTTTAAAAAGACATAATATATTTGACCAAAGGCAGTAAAAAAGGCAAAAGGTTCTAGGGGTTAACACTTTGCAA
Coding sequences of Glyma.01g015100
>Glyma.01g015100.1 sequence-type=CDS polypeptide=Glyma.01g015100.1.p locus=Glyma.01g015100 ID=Glyma.01g015100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCAGATATCAGTTTCGGTGGTTTCACTCTATCGCCACCCAGTTCCGATGGCTCTCCTCGCCGTCACTTCGCGCGCTCCCTTCCTCTTCTCCCCAAACCCTAAACCACTTTCTCCATCCTCTTTCTACTCCCACCTCTCTCTCTCTCCTCGCTCTCCCAGGTTCCCTTCTCTCCGCTTCCGCTCTGCCACCGGAGACGCCAGCGACGCCGGCAAGCCCGCCGGTAAGATCTCCGACGAGTGGGGCGAGGACTACGATCCCGAGGCCGAAGCATTGACCTCCAAGCTTCCCGACTCGGACCCTCCCAAGGACGAGGACGAGTGGCAGGAAGGAGGGGCGCCCGACGCCGGCGGCTACGTCGACGGCGGGAACGGAACTCCGGTCACCGGAGCTGAGGATCCGGCGGAGGAGGAGGTGGACGATAAGTTGGAGGCGCTGAAGCGTGCTTTGGTGGATACTTTGTATGGGACCGAGTTAGGGATTCGGGCCGGGTCGGAGGTTCGAGCTGAGGTATCCGAATTGGTGAGTCAGTTGGAAGCGGCGAATCCTACACTCGCCCCCGTGGAAGAACCTGCCCTTCTCAATGGGAATTGGGTGTTGCTGTACACTGCATCTTCTGAACTGTTGCCTCTTCTAGCCGCGGGAAGATTGCCTTTGTTGAAGGTGGACAAGATTACACAAACAATTGATACTAGTAGCTCCACTATTATAAACTCCACAACATTGTCTAGCCCTTTTGCATCCTTGTCTTTCAGTGCATCTGCCTCATTTGAAGTTCGAACCCCTACGAGAATTCAGGTTACATTTAAAGAAGGTTCAATACAACCTCCAGAGATAAAGTCTAATGTTGAACTACCAGAAAATGTAGACATTTTTGGCCAAAAGCTTAGCCTACAGCCTCTGCAACAATCCCTTGGCCCACTTCAGGGTCTGGTGGAAAACATATCGCGTGTCATTTCTGGTCAGCCACCTCTTAAGATTCCCATCCCTGGCGAAAGGACAAGCTCCTGGCTTCTTACTACATATCTTGATAAGGACTTGCGAATATCAAGGGGGGATGGTGGTCTTTTCGTTCTTGCCAGAGAAGGGAGTCCACTTCTTGATCAGTAG

>Glyma.01g015100.2 sequence-type=CDS polypeptide=Glyma.01g015100.2.p locus=Glyma.01g015100 ID=Glyma.01g015100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGTTCAGATATCAGTTTCGGTGGTTTCACTCTATCGCCACCCAGTTCCGATGGCTCTCCTCGCCGTCACTTCGCGCGCTCCCTTCCTCTTCTCCCCAAACCCTAAACCACTTTCTCCATCCTCTTTCTACTCCCACCTCTCTCTCTCTCCTCGCTCTCCCAGGTTCCCTTCTCTCCGCTTCCGCTCTGCCACCGGAGACGCCAGCGACGCCGGCAAGCCCGCCGGTAAGATCTCCGACGAGTGGGGCGAGGACTACGATCCCGAGGCCGAAGCATTGACCTCCAAGCTTCCCGACTCGGACCCTCCCAAGGACGAGGACGAGTGGCAGGAAGGAGGGGCGCCCGACGCCGGCGGCTACGTCGACGGCGGGAACGGAACTCCGGTCACCGGAGCTGAGGATCCGGCGGAGGAGGAGGTGGACGATAAGTTGGAGGCGCTGAAGCGTGCTTTGGTGGATACTTTGTATGGGACCGAGTTAGGGATTCGGGCCGGGTCGGAGGTTCGAGCTGAGGTATCCGAATTGGTGAGTCAGTTGGAAGCGGCGAATCCTACACTCGCCCCCGTGGAAGAACCTGCCCTTCTCAATGGGAATTGGGTGTTGCTGTACACTGCATCTTCTGAACTGTTGCCTCTTCTAGCCGCGGGAAGATTGCCTTTGTTGAAGGTGGACAAGATTACACAAACAATTGATACTAGTAGCTCCACTATTATAAACTCCACAACATTGTCTAGCCCTTTTGCATCCTTGTCTTTCAGTGCATCTGCCTCATTTGAAGTTCGAACCCCTACGAGAATTCAGGTACTCTGA
Predicted protein sequences of Glyma.01g015100
>Glyma.01g015100.1.p sequence-type=predicted peptide transcript=Glyma.01g015100.1 locus=Glyma.01g015100 ID=Glyma.01g015100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVQISVSVVSLYRHPVPMALLAVTSRAPFLFSPNPKPLSPSSFYSHLSLSPRSPRFPSLRFRSATGDASDAGKPAGKISDEWGEDYDPEAEALTSKLPDSDPPKDEDEWQEGGAPDAGGYVDGGNGTPVTGAEDPAEEEVDDKLEALKRALVDTLYGTELGIRAGSEVRAEVSELVSQLEAANPTLAPVEEPALLNGNWVLLYTASSELLPLLAAGRLPLLKVDKITQTIDTSSSTIINSTTLSSPFASLSFSASASFEVRTPTRIQVTFKEGSIQPPEIKSNVELPENVDIFGQKLSLQPLQQSLGPLQGLVENISRVISGQPPLKIPIPGERTSSWLLTTYLDKDLRISRGDGGLFVLAREGSPLLDQ*

>Glyma.01g015100.2.p sequence-type=predicted peptide transcript=Glyma.01g015100.2 locus=Glyma.01g015100 ID=Glyma.01g015100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MVQISVSVVSLYRHPVPMALLAVTSRAPFLFSPNPKPLSPSSFYSHLSLSPRSPRFPSLRFRSATGDASDAGKPAGKISDEWGEDYDPEAEALTSKLPDSDPPKDEDEWQEGGAPDAGGYVDGGNGTPVTGAEDPAEEEVDDKLEALKRALVDTLYGTELGIRAGSEVRAEVSELVSQLEAANPTLAPVEEPALLNGNWVLLYTASSELLPLLAAGRLPLLKVDKITQTIDTSSSTIINSTTLSSPFASLSFSASASFEVRTPTRIQVL*






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