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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G69770.1 | AT | chromomethylase 3 | JGI | N/A | IEA |
| GO:0006306 | GO-bp | DNA methylation | JGI | N/A | IEA |
| GO:0006342 | GO-bp | chromatin silencing | EnsemblGenomes | N/A | IEA |
| GO:0010069 | GO-bp | zygote asymmetric cytokinesis in embryo sac | EnsemblGenomes | N/A | IEA |
| GO:0010425 | GO-bp | DNA methylation on cytosine within a CNG sequence | EnsemblGenomes | N/A | IEA |
| GO:0032259 | GO-bp | methylation | EnsemblGenomes | N/A | IEA |
| GO:0051567 | GO-bp | histone H3-K9 methylation | EnsemblGenomes | N/A | IEA |
| GO:0090116 | GO-bp | C-5 methylation of cytosine | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0003677 | GO-mf | DNA binding | JGI | N/A | IEA |
| GO:0003682 | GO-mf | chromatin binding | EnsemblGenomes | N/A | IEA |
| GO:0003886 | GO-mf | DNA (cytosine-5-)-methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | JGI | N/A | IEA |
| GO:0016740 | GO-mf | transferase activity | EnsemblGenomes | N/A | IEA |
| PTHR10629 | Panther | CYTOSINE-SPECIFIC METHYLTRANSFERASE | JGI | N/A | IEA |
| PF00145 | PFAM | C-5 cytosine-specific DNA methylase | JGI | N/A | IEA |
| PF00385 | PFAM | Chromo (CHRromatin Organisation MOdifier) domain | JGI | N/A | IEA |
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Glyma.01g007800 not represented in the dataset |
Glyma.01g007800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma01g01120 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g007800.1 sequence-type=CDS polypeptide=Glyma.01g007800.1.p locus=Glyma.01g007800 ID=Glyma.01g007800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCCTAGCAAGCGCAAGACCAGATCCTCCGCCTCTCCCGCTGCCGCGCCGCCGAGCAAGCGCGCCTCCAGATCCTCCGCCTCTCGCGTCGCCGATTCCGCACCGGTCAAATCTGAAGCCGAGGAAGTTGTGGCAGCTTCCTCTGTCGTCAAAGAAGAGGCGCAAGCAAGCTTCACGGACGTTACTGACGGCAACGTTAGCGATGGCGAGGGGACTAACGCCAGATTCGTCGGAGAGCCTGTTCCCGACGAGGAAGCCCGGCGCCGCTGGCCGAAACGGTACCAGGAAAAGGAAAAGAAGCAATCCGCTGGGCCAAAATCAAACAGAAACGATGAAGACGAGGAGATTCAACAAGCTCGACGTCACTACACTCAGGCAGAAGTAGATGGGTGCATGCTTTACAAACTTTACGATGATGCCCATGTTAAAGCAGAAGAAGGAGAAGACAATTACATTTGTAAAATTGTTGAGATATTTGAGGCCATTGATGGGGCACTGTATTTTACGGCACAATGGTATTATAGGGCTAAAGACACTGTCATTAAAAAACTTGCATATCTCATTGAACCAAAGCGAGTTTTCTTTTCTGAAGTCCAGGATGACAACCCTTTGGATTGTCTAGTTGAAAAGCTGAACATCGCCAGAATAACATTAAATGTAGATTTAGAAGCAAAGAAGGAAACCATTCCACCTTGTGATTATTACTGTGATACACAATATCTTTTGCCATACTCCACATTTGTTAACTTACCATCAGAAAATGGGGAATCTGGTAGTGAAACTTCTTCTACAATATCTTCTGAAACTAATGGAATCGGAAAATATGAGGTGAACTCTCAACCTAAGGAAGCTTTTCTTCCCGAAGAAAGTAAAGATCCGGAGATGAAGTTACTAGATTTATATTGTGGTTGTGGTGCAATGTCAACTGGTTTGTGCCTTGGTGGAAATTTATCTGGTGTGAACCTTGTTACTAGATGGGCAGTGGACTTGAATCAACATGCTTGTGAATGTCTTAAATTAAACCATCCTGAAACTGAGGTTAGAAATGAATCGGCAGAAAATTTTCTTTCATTATTGAAGGAGTGGCAGGAATTATGTAGTTACTTCTCTCTAGTTGAAAAAAAGGTGTCACATGAGAAATATGTGAATCTTTTTAGTGAAGATGACGATGACACTAGCAGTAATGAAGAGGTTAATAGTGAAGATGACAATGAACTGAATGAAGATGATGAAATATTTGAAGTTTCTGAAATCCTTGCTGTCTGCTACGGTGACCCAAATAAGAAAAAAGAACAAGGGTTATACTTCAAGGTTCATTGGAAGGGTTATGAATCTGCCCTGGATTCTTGGGAACCAATTGAAGGTCTAAGTAATTGCAAGGAAAAGATTAAAGAATTTGTCAGTCGAGGCTTCAAGTCACAGATATTGCCTTTGCCTGGAGATGTTGATGTAATTTGTGGTGGACCTCCTTGCCAAGGTATTAGTGGTTTCAACCGGTTTCGGAACAAAGAGAGTCCTTTGGATGATGAGAAGAACAAACAACTAGTTGTTTTTATGGATATTGTTCAATACCTTAAGCCCAAATTTACATTGATGGAAAATGTGGTTGATCTTGTAAAATTTGCGGAAGGCTTTCTTGGGAGATATGCCTTGGGTCGCCTTCTTCAAATGAATTATCAAGCGCGTTTAGGAATTATGGCTGCAGGTGCTTATGGGCTTCCTCAGTTTCGTTTGCGCGTCTTTTTATGGGGGGCTGCACCTTCTCAGAAGTTGCCACAATTTCCGCTTCCAACTCATGATGTTATTGTAAGGGGTGTTATTCCCTTGGAGTTTGAGATAAACACTGTAGCATACAATGAAGGACAAAAGGTTCAACTGCAGAAGAAGCTTTTATTGGAGGATGCTATTTCTGACCTTCCTCGGGTTCAGAACAATGAGCGTCGTGATGAGATAAAATATGACAAAGCTGCTCAAACGGAGTTCCAACGATTCATTAGATTAAGCAAACATGAAATGTTGGAGCTTCAATCTAGAACAAAATCGTCGAAGTCTTTGCTATATGATCATCGTCCACTAGAATTGAATGCGGATGATTACCAACGTGTGTGTCGGATCCCTAAAAAGAAGGGTGGATGCTTCAGAGATTTACCAGGTGTTCGTGTGGGAGCTGATAACAAGGTTGAATGGGATCCTGATGTCGAACGTGTATATTTGGATTCAGGAAAACCATTGGTTCCAGATTATGCCATGACTTTTGTGAATGGAACTTCATCAAAACCTTTTGCTCGGTTATGGTGGGATGAAACTGTTCCAACTGTTGTGACAAGAGCAGAACCTCACAACCAGGCAATTTTACACCCTGAACAAGACAGAGTGTTGACGATTCGTGAAAATGCAAGACTCCAAGGTTTTCCAGATTTCTACAAGTTGTGTGGGCCGGTCAAAGAAAGGTACATTCAAGTTGGGAATGCAGTGGCAGTTCCAGTAGCTAGAGCTTTAGGATACACACTAGGCCTTGCATTTGAAGGGTCTACTTCTACAAGTGATGATCCATTGTATAAATTACCTGATAAATTTCCCATGATTAGGGATCGGGTTTCTTCTGTATCTTCCGAAGATGATGTGTAA
>Glyma.01g007800.1.p sequence-type=predicted peptide transcript=Glyma.01g007800.1 locus=Glyma.01g007800 ID=Glyma.01g007800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MPSKRKTRSSASPAAAPPSKRASRSSASRVADSAPVKSEAEEVVAASSVVKEEAQASFTDVTDGNVSDGEGTNARFVGEPVPDEEARRRWPKRYQEKEKKQSAGPKSNRNDEDEEIQQARRHYTQAEVDGCMLYKLYDDAHVKAEEGEDNYICKIVEIFEAIDGALYFTAQWYYRAKDTVIKKLAYLIEPKRVFFSEVQDDNPLDCLVEKLNIARITLNVDLEAKKETIPPCDYYCDTQYLLPYSTFVNLPSENGESGSETSSTISSETNGIGKYEVNSQPKEAFLPEESKDPEMKLLDLYCGCGAMSTGLCLGGNLSGVNLVTRWAVDLNQHACECLKLNHPETEVRNESAENFLSLLKEWQELCSYFSLVEKKVSHEKYVNLFSEDDDDTSSNEEVNSEDDNELNEDDEIFEVSEILAVCYGDPNKKKEQGLYFKVHWKGYESALDSWEPIEGLSNCKEKIKEFVSRGFKSQILPLPGDVDVICGGPPCQGISGFNRFRNKESPLDDEKNKQLVVFMDIVQYLKPKFTLMENVVDLVKFAEGFLGRYALGRLLQMNYQARLGIMAAGAYGLPQFRLRVFLWGAAPSQKLPQFPLPTHDVIVRGVIPLEFEINTVAYNEGQKVQLQKKLLLEDAISDLPRVQNNERRDEIKYDKAAQTEFQRFIRLSKHEMLELQSRTKSSKSLLYDHRPLELNADDYQRVCRIPKKKGGCFRDLPGVRVGADNKVEWDPDVERVYLDSGKPLVPDYAMTFVNGTSSKPFARLWWDETVPTVVTRAEPHNQAILHPEQDRVLTIRENARLQGFPDFYKLCGPVKERYIQVGNAVAVPVARALGYTLGLAFEGSTSTSDDPLYKLPDKFPMIRDRVSSVSSEDDV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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