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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G49820.1 | AT | S-methyl-5-thioribose kinase | JGI | N/A | IEA |
| GO:0009086 | GO-bp | methionine biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0016310 | GO-bp | phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0046522 | GO-mf | S-methyl-5-thioribose kinase activity | EnsemblGenomes | N/A | IEA |
| PWY-6754 | SoyCyc9 | S-methyl-5'-thioadenosine degradation I | Plant Metabolic Network | ISS | |
| PWY-7270 | SoyCyc9 | L-methionine salvage cycle II (plants) | Plant Metabolic Network | ISS | |
| PWY-7528 | SoyCyc9 | L-methionine salvage cycle I (bacteria and plants) | Plant Metabolic Network | ISS | |
| GN7V-55632 | SoyCyc9-rxn | S-methyl-5-thioribose kinase | Plant Metabolic Network | ISS |
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Glyma.01G244200 not represented in the dataset |
Glyma.01G244200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g244200 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma01g45520 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g244200.1 sequence-type=CDS polypeptide=Glyma.01g244200.1.p locus=Glyma.01g244200 ID=Glyma.01g244200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCGTTTACAGAATTTTGTAGACTGGACGAGAGGTCGGTGATAGAGTACGTAAAGGGCGTTCCAGGCCTGTGGTCGAAGCTGGAATTGGATGATGATAACATAATAACCGTGAAAGAGATCGGAGATGGTAACCTCAACTTTGTGTTTGTGGTGGCCAACTCCGTTATCATCAAGCAGGCTCTGCCTTACATTCGTTGCATAGGGGAATCATGGCCACTCACAAAGGACAGAGCATACTTTGAGGCCATGGCACTCCAAGAGCAGGGACGCTTAACTCCTCACCATGTCCCCCAAGTCTATCATTTTGACCCAACCATGTCCTTGATCGCCATGCGTTATCTGGAGCCTCCTCACATAGTACTCAGAAAAGGCTTGATTGCTGGAATTCAGTATCCACTCCTAGCACGCCACATGGCACATTTCATGGCAAACACTTTCTTCTTTACTTCTCTCCTTTTCCGCTCCACACTAGATCACAAACGGGAAGTTGCCAAATTTTGCGGGAATGCAGCGTTATGCAGGCACACTCAGCAGGTTGTTTTCTCCGACCCGTATCAAATTTCTCAATACAATCATTGGACTTCTCCTTATCTTGATCCTGATGCCGAGGCTCTTCGCCAAGATGATCTCCTCAAACTTGAAATTGCTGATCTCAAGTCTAAGTTCTCCGAGAGGGCACTGGCACTCATACATGGAGATCTGCACACTATCATTGATCCAGAATTTGCATTCTATGGACCAATGGGTTTTGACATGGGTGCATTCTTGGGAAACCTCATCTTGGCTTTCTATGCTCAGGACGGACTTGTTCATCAACCCAATCATTCAAAAGCATATAAGGAGTGGATTCTTCAGACAATTGAAGACACTTGGAATCTGTTTTATGACAAATTCATTGCACTTTGGGATGAGCACAGAAATGGTGCTGGTGAGGCATATCTTCCAGCAATTTATAACAATCCTGAGGTTCAGCTTCTTGCACAGAAGAGATACATGACAGATTTGTTTCATGACAGTCTTGGATTTGGTGCTGCCAAAATGATAAGGAGAATCGTTGGTGTGGCCCATGTTGAGGATTTTGAATCCATTACTGATGCTGTTAAACGGGCTACCTGTGAACGGAAGGCTCTTAATTTGGCTAAGATGCTTCTCAAAGATAGAAGAAAATTTGAAGGCATTGCTGAAATTGTTTCAGCAATTCGGCAATTCTAG
>Glyma.01g244200.1.p sequence-type=predicted peptide transcript=Glyma.01g244200.1 locus=Glyma.01g244200 ID=Glyma.01g244200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAFTEFCRLDERSVIEYVKGVPGLWSKLELDDDNIITVKEIGDGNLNFVFVVANSVIIKQALPYIRCIGESWPLTKDRAYFEAMALQEQGRLTPHHVPQVYHFDPTMSLIAMRYLEPPHIVLRKGLIAGIQYPLLARHMAHFMANTFFFTSLLFRSTLDHKREVAKFCGNAALCRHTQQVVFSDPYQISQYNHWTSPYLDPDAEALRQDDLLKLEIADLKSKFSERALALIHGDLHTIIDPEFAFYGPMGFDMGAFLGNLILAFYAQDGLVHQPNHSKAYKEWILQTIEDTWNLFYDKFIALWDEHRNGAGEAYLPAIYNNPEVQLLAQKRYMTDLFHDSLGFGAAKMIRRIVGVAHVEDFESITDAVKRATCERKALNLAKMLLKDRRKFEGIAEIVSAIRQF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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