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Report for Sequence Feature Glyma.01G216100

Feature Type:gene_model
Chromosome:Gm01
Start:54667100
stop:54668417
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01G216100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37480.1AT Chaperone DnaJ-domain superfamily protein JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
PF00330PFAM Aconitase family (aconitate hydratase) JGI N/AIEA
GLYOXYLATE-BYPASSSoyCyc9 glyoxylate cycle Plant Metabolic Network ISS
PWY-5464SoyCyc9 superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycle Plant Metabolic Network ISS
PWY-561SoyCyc9 superpathway of glyoxylate cycle and fatty acid degradation Plant Metabolic Network ISS
PWY-5690SoyCyc9 TCA cycle II (plants and fungi) Plant Metabolic Network ISS
PWY-6549SoyCyc9 L-glutamine biosynthesis III Plant Metabolic Network ISS
GN7V-66916SoyCyc9-rxn cis-aconitate hydratase Plant Metabolic Network ISS

Expression Patterns of Glyma.01G216100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01G216100 not represented in the dataset
Glyma.01G216100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.01G216100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g216100 Wm82.a4.v1ISS As supplied by JGI


Coding sequences of Glyma.01G216100
>Glyma.01g216100.1 sequence-type=CDS polypeptide=Glyma.01g216100.1.p locus=Glyma.01g216100 ID=Glyma.01g216100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGGAACTGATTTAGACACAACTATCATTGATGGTCTGGGTGTTGCTAGATGGAGAGTTGGTGGAATAGAAGCAGAAGCTGCAATGCTTGGCCAGAATACCTTGGTAGAGTTGTGTTCAACACAAATGGTGGGAACTGATTCAGACACAAGTATCATTGATGGCCTGGGTGTTGGTGGATGGGGAGTTGCTGGAATAGAAGCAAAAGTTACAATGCTTGGCCAAATTCTTTCAGATTCTCAAAAGAGAACCCATTATGACATGTACCTGTTGTATCGAAAAAAACTACTTATGCAAATGCATTCTGGACAGGGTTCAAAATTGCAAATTTACAAATCACAGGCTATTGTGTTCAAGGAGATGGAAGTTGTTGAATGGTTAAAATGGTGCAGATTAACTATAAATAATATTTTGGCAGAAAATAAGATGGTAGTTGGAACCGGCTATTTTGATGTATTTGAGAGAGATTTTTATTCAGCTATTCATGCAACATACTATGGTCCTAAAATTCAGTCCATGGAGCTTCTTCCTGATGTAGTTTGA
Predicted protein sequences of Glyma.01G216100
>Glyma.01g216100.1.p sequence-type=predicted peptide transcript=Glyma.01g216100.1 locus=Glyma.01g216100 ID=Glyma.01g216100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAGTDLDTTIIDGLGVARWRVGGIEAEAAMLGQNTLVELCSTQMVGTDSDTSIIDGLGVGGWGVAGIEAKVTMLGQILSDSQKRTHYDMYLLYRKKLLMQMHSGQGSKLQIYKSQAIVFKEMEVVEWLKWCRLTINNILAENKMVVGTGYFDVFERDFYSAIHATYYGPKIQSMELLPDVV*






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