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Report for Sequence Feature Glyma.01G215400

Feature Type:gene_model
Chromosome:Gm01
Start:54602115
stop:54603087
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01G215400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G63000.1AT nucleotide-rhamnose synthase/epimerase-reductase JGI N/AIEA
GO:0009058GO-bp biosynthetic process JGI N/AIEA
GO:0010253GO-bp UDP-rhamnose biosynthetic process EnsemblGenomesN/AIEA
GO:0019305GO-bp dTDP-rhamnose biosynthetic process EnsemblGenomesN/AIEA
GO:0044237GO-bp cellular metabolic process JGI N/AIEA
GO:0045226GO-bp extracellular polysaccharide biosynthetic process JGI N/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0009506GO-cc plasmodesma EnsemblGenomesN/AIEA
GO:0048046GO-cc apoplast EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0008830GO-mf dTDP-4-dehydrorhamnose 3,5-epimerase activity EnsemblGenomesN/AIEA
GO:0008831GO-mf dTDP-4-dehydrorhamnose reductase activity EnsemblGenomesN/AIEA
GO:0008831GO-mf dTDP-4-dehydrorhamnose reductase activity JGI N/AIEA
GO:0050662GO-mf coenzyme binding JGI N/AIEA
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI N/AIEA
PTHR10366:SF55Panther JGI N/AIEA
PF04321PFAM RmlD substrate binding domain JGI N/AIEA
PWY-3221SoyCyc9 dTDP-L-rhamnose biosynthesis II Plant Metabolic Network ISS
PWY-3261SoyCyc9 UDP-β-L-rhamnose biosynthesis Plant Metabolic Network ISS
GN7V-49040SoyCyc9-rxn dTDP-4-dehydrorhamnose reductase Plant Metabolic Network ISS

Expression Patterns of Glyma.01G215400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01G215400 not represented in the dataset
Glyma.01G215400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.01G215400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g215400 Wm82.a4.v1ISS As supplied by JGI
Glyma01g42441 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01G215400
>Glyma.01g215400.1 sequence-type=CDS polypeptide=Glyma.01g215400.1.p locus=Glyma.01g215400 ID=Glyma.01g215400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGCAGAAGCAAATGGCGGCGAGAAGCAATTGAAATTTCTGATCTACGGTCGCAGCGGTTGGATTGGTGGTCTACTGGGTAAGCTCTGCGAAGAGCGCGGGATCCAATATGAGTACGGCACCGGCAGATTGGAGAACCGCTCGTCGTTGGAGGCGGACATAGCGGCTGTGAAGCCCAGCCACGTGTTCAACGCCGCGGGTGTCACGGGTAGACCCAATGTGGACTGGTGCGAATCTCACAAAGTTGAAACCATCCGAACCAACGTCGTCGGCACTCTCACCCTCGCCGACGTCTGCCATCATAAAGGCCTCATCCTCATCAACTACGCCACCGGCTGCATCTTCGAGTACGATTCTTCCCACACTCTCGGATCCGGCATCGCCTTCAAGGAACACGACACTCCCAATTTCACCGGATCCTTCTACTCCAAGACCAAAGCCATGGTGGAGGATCTGGTTGGGAACTACGAGAACGTGTGCACGTGCATCACTCGATACGACAAGGTTGTCGACATTCCCAACTCCATGACCATATTGGACGAGCTTCTCCCAATCTCGCTGGAGATGGCCAAGCGGAACCTCACTGGGATCTGGAATTTCACCAACCCTGGAGTCGTAAGTCACAACGAGATTTTACAGATGTACAAGGAATACGTGGATCCGAACTTTACATGGAAGAACTTCACTCTGGAGGAGCAGGCTAAGGTGATTGTTGCCCCTAGAAGCAACAACGAGCTTGACGCCTCTAAGTTGAAGAATGAGTTTCCTCAACTTTTGTCCATCAAAGACTCCCTCGTTAAGTATGTATTCCAGCCAAATCAGAAAAAGGCATAA
Predicted protein sequences of Glyma.01G215400
>Glyma.01g215400.1.p sequence-type=predicted peptide transcript=Glyma.01g215400.1 locus=Glyma.01g215400 ID=Glyma.01g215400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGAEANGGEKQLKFLIYGRSGWIGGLLGKLCEERGIQYEYGTGRLENRSSLEADIAAVKPSHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCHHKGLILINYATGCIFEYDSSHTLGSGIAFKEHDTPNFTGSFYSKTKAMVEDLVGNYENVCTCITRYDKVVDIPNSMTILDELLPISLEMAKRNLTGIWNFTNPGVVSHNEILQMYKEYVDPNFTWKNFTLEEQAKVIVAPRSNNELDASKLKNEFPQLLSIKDSLVKYVFQPNQKKA*






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