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Report for Sequence Feature Glyma.01G187400

Feature Type:gene_model
Chromosome:Gm01
Start:52250433
stop:52263914
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01G187400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67100.1AT DNA-directed DNA polymerases JGI N/AIEA
GO:0006260GO-bp DNA replication EnsemblGenomesN/AIEA
GO:0006260GO-bp DNA replication JGI N/AIEA
GO:0006269GO-bp DNA replication, synthesis of RNA primer EnsemblGenomesN/AIEA
GO:0006270GO-bp DNA replication initiation EnsemblGenomesN/AIEA
GO:0006272GO-bp leading strand elongation EnsemblGenomesN/AIEA
GO:0006273GO-bp lagging strand elongation EnsemblGenomesN/AIEA
GO:0006303GO-bp double-strand break repair via nonhomologous end joining EnsemblGenomesN/AIEA
GO:0009965GO-bp leaf morphogenesis EnsemblGenomesN/AIEA
GO:0071897GO-bp DNA biosynthetic process EnsemblGenomesN/AIEA
GO:0090305GO-bp nucleic acid phosphodiester bond hydrolysis EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005658GO-cc alpha DNA polymerase:primase complex EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding JGI N/AIEA
GO:0001882GO-mf nucleoside binding EnsemblGenomesN/AIEA
GO:0001882GO-mf nucleoside binding JGI N/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003887GO-mf DNA-directed DNA polymerase activity EnsemblGenomesN/AIEA
GO:0003887GO-mf DNA-directed DNA polymerase activity JGI N/AIEA
GO:0003896GO-mf DNA primase activity EnsemblGenomesN/AIEA
GO:0008408GO-mf 3'-5' exonuclease activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016779GO-mf nucleotidyltransferase activity EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
GO:0051536GO-mf iron-sulfur cluster binding EnsemblGenomesN/AIEA
GO:0051539GO-mf 4 iron, 4 sulfur cluster binding EnsemblGenomesN/AIEA
KOG0970 KOG DNA polymerase alpha, catalytic subunit JGI N/AIEA
PTHR10322Panther DNA POLYMERASE CATALYTIC SUBUNIT JGI N/AIEA
PTHR10322:SF3Panther JGI N/AIEA
PF00136PFAM DNA polymerase family B JGI N/AIEA
PF03104PFAM DNA polymerase family B, exonuclease domain JGI N/AIEA
PF08996PFAM DNA Polymerase alpha zinc finger JGI N/AIEA
PF12254PFAM DNA polymerase alpha subunit p180 N terminal JGI N/AIEA

Expression Patterns of Glyma.01G187400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01G187400 not represented in the dataset
Glyma.01G187400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.01G187400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g187400 Wm82.a4.v1ISS As supplied by JGI
Glyma01g39430 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01G187400
>Glyma.01g187400.1 sequence-type=CDS polypeptide=Glyma.01g187400.1.p locus=Glyma.01g187400 ID=Glyma.01g187400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGATGATGAGCCAGTAAGCGGAAGGCGAAGGCCGAGGGGACCGGAGGCCACCGAACGCAGCAAAGCCTTGGAGCGTCTCAAGGCCCGCATCCACGGCGGTCGTCGATCCGACGCCACCGGGCCCCAAATCAGGTTAGAAAACCCTGTCTACGACACCGTCCCTGAGGACGAGTACAACGCCCTCGTCGCCAAGCGCCGCGAACAGGCTCGGTCCTTCATCGTCGACGATGAAGGACTCGGCTACGGCGACGAGGGCGAGGAAGAGGACTGGTCGCAGGCCGGATTCAACCTCTCCTCCGGCGAATCCGAAGACGAATCGGAGAGGCCGAAGCGGAAGAAGGTCGAGAAGAAGGATCCTCAGCCGAAACGACCTTCTTCCTCGCTCTCCGCCGCCGCCGCCATGATGGGAGGCCAGAGGCTGTCGTCGATGTTCACTTCGTCTGTTTTCAAGAAGAGCAGAGACGACAAGGCCTCCGAGAGCATCGTCGATGATGTTATCGCGGAGTTTGCGGCGGACGAGACCGATAGACTGAGGCGTAAAAGGGCTAATGTGAATTCCTCCTCCTCTTCGGTTACAAATGATGCTTTGCGGATTAACAACACGGTTAGGGATAAGCCTTCTGTTGATTTGATTGGAGCTTCTTCGCTGCCGGCAAATGGTAATGCTGTGTCTGTTAAGGTTGTTGACAGTGATGGTTCTGACTCGGGGTTTGAGCAAAAGAGTGAGGCGGTTAGTGAAATTGAAGATTTGGCGTGTGTAAGTTCTGAGAATGGACAGGCGCCAGTGGTGGAATCTGATGATTGTAAAATTAATGAGGGTATAGTTGAGGAGAAAGAGATGAAGAAAGCTGAAATTGAAGTAATATCGGGTGGGAAAAAGGAGGTGTTCACTTTGAATGCGAAGGTTAAAGAGGAGGACGAGGAGGACCCGTCATTGTCTGCAACTGCTGGTTGGAAGGAAGTGATGAGTGGTGCCGGTGGTGTTGATGCTGATTCAAAGGATGCTTTGCAGAACCAACAACACTCAGAGTTAGATTTGGAGAAAGATGGATCATTTTTTTTCTATATACTAGATGCATATGAGGAGTTTTATGGAGAAAATAGGGGCACCCTTTATCTGTTTGGGAAGGTCAAAACTGGGGATTTGTATCAGAGTTGCTGTATTATTGTGAAGAACATGCAGAGGTGCATCTATGCAGTTCCAAGCCTATCTCTGCATCGCACAGAAGAGATGATGAGTCTTGAGAGAGATGTCCAAGAGTCTCGAATTTCTTCTGCAGATTTCTTTAAAAAGCTGCAAGATGCAGTATCTGATGTTAAGAATGAGATAGCACAGCATCTGGTGAATTTGGAAGTTTCTAACTTTAGCATGGCTCCTGTTAAGAGGAAATACGCATTTGAACGGTCTGAAATTCCTGCAGGTGAAAATTATGTGGTGAAAATCAATTATTCATTCAAGGATCCAGTACTCCCTGTAGATCTCAAAGGAGAAAGTTTCTGTGCTCTCTTAGGAACTGGTTGCAGTGCGCTTGAGCTTTTTTTGATTAAAAGAAAGATAAAGGGTCCTTCATGGCTACAGGTTTCAAACTTTTCTCCAAGCTCAGCTTCTCGAAGGGTTAGCTGGTGCAAATTTGAAGTGACTGTTGACTCTCCTAAACAAATAAATTCAGCTCCAAAGATCACTTCTAAGATTCCTCCTGTGGTTGTTGCAGCAATAAACTTGAAAACCATCATAAATGAAAAACAGAACATAAATGAGATTGTATCAGCATCTGTTGTCTGTTGCAACATGGTTAAGATTGACACTCCTATGATGGCTTCAGAGTGGAGGAGACCTGAAAGGCTGACCCGTTTTACTGTTGTTCGTAAACTTGATGGGAGTATATTTCCGATGGGGTTCAACAAGGAGGTTACGGACAGAAACTTACAAGTGGGTTCAAATATTCTGTGTGCTGAGAGCAGTGAAAGAGCTTTGTTGAACCGCTTGATGTTAGAATTGCACAAGTTGGACAGTGATGTTCTTGTTGGACACAATATTTCTGGATTTGACCTGGATGTTCTTCTCCACAGATCCCAGGCTTGCAAAGTAGCAAGCAGCATGTGGTCTAAATTAGGCCGCCTCAACCGTTCTACAATGCCTAAACTTAGAAGAAGCAAGGTTTTTGGTTCTGGAGCAGATCCTGGTATCATGTCCTGCATTGCTGGCCGACTTCTTTGTGATACATACTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTATTCTTTAACTCACCTTGCAAAATCACATCTAAACAAGATTCGGACGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAAACAGCAGAATCCCTAATGAAGCTTATTGAATACGGTGAAACAGATGCATGGCTGTCTATGGAACTCATGTTTTATTTAAGTGTTCTTCCGCTCACACGTCAGCTGACTAATATAAGTGGCAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGAGTGGAATATCTTTTGCTGCATACTTTCCACGCAATGAAATTTATGGTGCCAGACAAGTTCTCATACCATGCAAAAGAAACAAAAGAAACAAAATTGATGAAACGCAGGTTAACTCATGATGTGGAGGATAACAACTTTGATGCATATATTGATGATGCAAACCATGACAATGATGCTTCTGAAGCTGATAATAAGAAAAGCAAAAAGGGTCCTTCTTACGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGGAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAGGTGCTGAAAAATCTGGTTGATCGGAGGAAAATGGTTAAGTCGTGGATAAAGAATGAAAAAAATAAGAATGAAAAGACTGATCCTATTAGAGTTCAGCAACTGGATATTCAGCAGCAAGCACTCAAGCTTACTGCAAACAGTATGTATGGGTGCCTGGGATTTTCGAATTCAAGATTTTATGCTAAGCCATTAGCTGAGCTTATAACTTCACAAGGAAGGGAGATACTACAGAGTACTGTTGATCTTGTTCAGAATAACTTGAATTTAGAGGTGATCTATGGCGATACTGATTCAATAATGATTTACAGTGGGCTAGATGAAATTGAGGAAGCTAATAAAATTGCTGTAAGAGTTATTCAAGAGGTCAATAAGAAGTATAAATGCTTGGAAATTGATCTTGATGGTTTATATAAAAGGATGCTGCTGCTTAAGAAAAAGAAGTATGCAGCTGTAAAGTTGCTGTATAAGGATGGCACCCCATATGAGGCTATTGAACGTAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCATATTAGCTAAAGAACTAGGAGATTTTTGCTTGACTCAAATTTTATCGGGAGGGTCATGCGAAGATGTTGTGGAGTCAATCCACAACTCACTAATGAAGGTACAAGAAGAAATGAGAAACGGACAGGTAGCATTAGAGAAATATGTCATTACAAAGACATTGACTAAACCTCCTGAAGCTTATCCTGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGATTGAAGCAACAAGGCTACTCTTCTGGTTGCTCTGTTGGTGATACAATCCCTTATATAATTTGCTATGAGCAGGGTGGTAGTCCAGGCAGTGCAGCTGGCATTGCTCAACGTGCCAGACATCCTGATGAACTTAAACGAGATCAAGGGACCTGGCTGATTGACATTGATTACTATTTATCACAACAGATCCATCCTGTGGTATCACGTCTTTGTGCACCAATTCAGGGCACAAGCCCAGAAAGACTAGCTGATTGTTTAGGGCTTGACTCATCAAAGTTTCATCATAAATCAAGTGAAGCTTTAAATGATGATTCTGCAAGCCCACTCTCGTTTGTTGCTGATGATGAGGAGAGGTATCGGGGATGTGAGCCGTTGGTCTTGTCATGCCCTAGCTGCTCTGGTACATTTGACTGCCCACCTGTTTTTAAATCTATTTGTTTGTTGGGAAGTGAAAGGCAAAGGCCAACCAGTGTAGCCCCAGAGGAAGCTGAGTACAATTTCTGGCGTAAGCTGTGCTGTCCTAAATGCCCAGATGTTAAAATTTCTCCTGTAATGATAGCTAATCAGGTCAAAAGGCAAGCAGAGAGGTTTATTTTAATGTACTACAGAGGTTTACTAGTGTGTGATGATGAAACGTGTAAGCATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGTACACAGAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCATGTGTTCGATACTGTTTCTTGTATAGAAAAGATGGAGGCAAAATCTAGAATACCGATAGAGAAAGAGTTGATAAAAATTAGGGCGGTGATTAAATCGGCAGCATCAACAGCACAGGAGATCAGGGACCGTTGTGCCTTTGGGTGGGTGAAATTGGAGAATCTGGTCATTTCAGTTTAA
Predicted protein sequences of Glyma.01G187400
>Glyma.01g187400.1.p sequence-type=predicted peptide transcript=Glyma.01g187400.1 locus=Glyma.01g187400 ID=Glyma.01g187400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MADDEPVSGRRRPRGPEATERSKALERLKARIHGGRRSDATGPQIRLENPVYDTVPEDEYNALVAKRREQARSFIVDDEGLGYGDEGEEEDWSQAGFNLSSGESEDESERPKRKKVEKKDPQPKRPSSSLSAAAAMMGGQRLSSMFTSSVFKKSRDDKASESIVDDVIAEFAADETDRLRRKRANVNSSSSSVTNDALRINNTVRDKPSVDLIGASSLPANGNAVSVKVVDSDGSDSGFEQKSEAVSEIEDLACVSSENGQAPVVESDDCKINEGIVEEKEMKKAEIEVISGGKKEVFTLNAKVKEEDEEDPSLSATAGWKEVMSGAGGVDADSKDALQNQQHSELDLEKDGSFFFYILDAYEEFYGENRGTLYLFGKVKTGDLYQSCCIIVKNMQRCIYAVPSLSLHRTEEMMSLERDVQESRISSADFFKKLQDAVSDVKNEIAQHLVNLEVSNFSMAPVKRKYAFERSEIPAGENYVVKINYSFKDPVLPVDLKGESFCALLGTGCSALELFLIKRKIKGPSWLQVSNFSPSSASRRVSWCKFEVTVDSPKQINSAPKITSKIPPVVVAAINLKTIINEKQNINEIVSASVVCCNMVKIDTPMMASEWRRPERLTRFTVVRKLDGSIFPMGFNKEVTDRNLQVGSNILCAESSERALLNRLMLELHKLDSDVLVGHNISGFDLDVLLHRSQACKVASSMWSKLGRLNRSTMPKLRRSKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTHLAKSHLNKIRTEVAPHEVPKMFQTAESLMKLIEYGETDAWLSMELMFYLSVLPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHTFHAMKFMVPDKFSYHAKETKETKLMKRRLTHDVEDNNFDAYIDDANHDNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDESFPRLPSSKTTGVLPEVLKNLVDRRKMVKSWIKNEKNKNEKTDPIRVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPLAELITSQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDEIEEANKIAVRVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLLYKDGTPYEAIERKGLDIVRRDWSILAKELGDFCLTQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEKYVITKTLTKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSPGSAAGIAQRARHPDELKRDQGTWLIDIDYYLSQQIHPVVSRLCAPIQGTSPERLADCLGLDSSKFHHKSSEALNDDSASPLSFVADDEERYRGCEPLVLSCPSCSGTFDCPPVFKSICLLGSERQRPTSVAPEEAEYNFWRKLCCPKCPDVKISPVMIANQVKRQAERFILMYYRGLLVCDDETCKHTTRSISLRLVGDSERGTVCPNYPRCNGRLVRKYTEADLYKQLSYFCHVFDTVSCIEKMEAKSRIPIEKELIKIRAVIKSAASTAQEIRDRCAFGWVKLENLVISV*






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