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Report for Sequence Feature Glyma.01G146900

Feature Type:gene_model
Chromosome:Gm01
Start:48292787
stop:48297312
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01G146900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G49590.1AT C2H2 and C2HC zinc fingers superfamily protein JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0150 KOG Spliceosomal protein FBP21 JGI N/AIEA
PTHR13173Panther WW DOMAIN BINDING PROTEIN 4 JGI N/AIEA
PF06220PFAM U1 zinc finger JGI N/AIEA

Expression Patterns of Glyma.01G146900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01G146900 not represented in the dataset
Glyma.01G146900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.01G146900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g146900 Wm82.a4.v1ISS As supplied by JGI
Glyma01g34940 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.01G146900
>Glyma.01g146900.2 sequence-type=transcript locus=Glyma.01g146900 ID=Glyma.01g146900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCTCTTTCTCTCTCGTCTAGAGAAGTCTGACATTGTTTTGTTCCCGAACTCTTTGCTCTGCTTTTTGGAGGGTTTTGAAAAAAATTTGAAGAGATTTATTAGCACTTCCCAGCAATAACACGATTAGCCTCTCTTCTCAGTTTCAATTCGTTTTCAATTCTTGCCGCATCGATTTCCAACCCTAATATTCTACCATGACTGAGGTTTTCTTAATTAACTGTTTTTTTCATGGTTTTAGTACTGGGTCAGCCAGGGCAACAAATGGTGCGACTTTTGCAAAATTTATATATCAAACAACCCTGGAAGCATAAGGAATCATGAGCTTGGCCAACGTCACAAAGATAATGTTTCCAAGAGGTTGGCTGCTATGAGAAAAGAGAATATTGCTAAGGAGAAAGAACAGAAAGAAACTGCTCGTGCCATTGAGCAAATTGAAGCAAAAGCGCAACGTAGCTATCAAAAGGATAAAGTGAAGTTTGAGGAGACGAGAGAATCACATGAATTGGATGACCAAGAATGGGAGTTTGACAGCAGTACAGGCTATTACTACCATAAAACAAATGGATTTTACTATGACCAAAAGTCAGGATTTTACTACTCTGATGCCATTGGCAAGTGGGTGACACAGGAAGAAGCATATGCCTCCCCTCACTTTACATCTAATGCCGGGCACAATGGACCAACTGCAAAGAAATCCTTGTCAACATCACAGTCCAAATCAGATGAAAACAAAGGAAATAAGTTTAATAATGGATCTTCACCAGGGCCAGTTGTTACAACTTCTTTGAATCCCAAAAGAAATGTGAAAGCTGCTCCTTCATCTCTTGCGGTTGGAAAGAGAAAGAGACCTGGTGAAAAATCCAAGGTTATCTCTGATGAAGAAAAAGCAGCTCTAAAGGCAAGAGAGGCTGCAAGGAAAAGAGTACAGGAGAGGGAGAAACCCTTGCTTGGCCTTTACAACAAGCCTTACTAACTGCAAAATTTACTTAACAGCCTTGTCTTCCCCCAGAAATATGAGGTTGTTTCTTTTTTGTTTGATTCCTTTATGCTGGTCGGTGTCCTAATTCTTCAAGTGTTTCCCATGTGACTCTACCTTGTACAATGTAACTGTTCCGTTTCTTTTTTTAGTTTTTGCAATACATGCTAATTTTCAGCCTTAGAGGAGAAAATAAGGGCTTAGAAGTCTTCGCTAGGCTGATGAAACCAAGTTAAATCCCTGTTGCAGAAGCTTTTAGAAAACACATCCAAATAAGTTAATCTTATGTGGATACAAAAGCAATGCTCATTTTACGTTCTTTAATGTGTTAAATCATATGATGTACAAGAAGGGAAAACTTACAGTCAAATATCCTGAACTTTATTCTTTTATTATTAGTACATATACTTTCTTTTT

>Glyma.01g146900.3 sequence-type=transcript locus=Glyma.01g146900 ID=Glyma.01g146900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CTCTCTTTCTCTCTCGTCTAGAGAAGTCTGACATTGTTTTGTTCCCGAACTCTTTGCTCTGCTTTTTGGAGGGTTTTGAAAAAAATTTGAAGAGATTTATTAGCACTTCCCAGCAATAACACGATTAGCCTCTCTTCTCAGTTTCAATTCGTTTTCAATTCTTGCCGCATCGATTTCCAACCCTAATATTCTACCATGACTGAGTACTGGGTCAGCCAGGGCAACAAATGGTGCGACTTTTGCAAAATTTATATATCAAACAACCCTGGAAGCATAAGGAATCATGAGCTTGGCCAACGTCACAAAGATAATGTTTCCAAGAGGTTGGCTGCTATGAGAAAAGAGAATATTGCTAAGGAGAAAGAACAGAAAGAAACTGCTCGTGCCATTGAGCAAATTGAAGCAAAAGCGCAACGTAGCTATCAAAAGGATAAAGTGAAGTTTGAGGAGACGAGAGAATCACATGAATTGGATGACCAAGAATGGGAGTTTGACAGCAGTACAGGCTATTACTACCATAAAACAAATGGATTTTACTATGACCAAAAGCAAGTGGGTGACACAGGAAGAAGCATATGCCTCCCCTCACTTTACATCTAATGCCGGGCACAATGGACCAACTGCAAAGAAATCCTTGTCAACATCACAGTCCAAATCAGATGAAAACAAAGGAAATAAGTTTAATAATGGATCTTCACCAGGGCCAGTTGTTACAACTTCTTTGAATCCCAAAAGAAATGTGAAAGCTGCTCCTTCATCTCTTGCGGTTGGAAAGAGAAAGAGACCTGGTGAAAAATCCAAGGTTATCTCTGATGAAGAAAAAGCAGCTCTAAAGGCAAGAGAGGCTGCAAGGAAAAGAGTACAGGAGAGGGAGAAACCCTTGCTTGGCCTTTACAACAAGCCTTACTAACTGCAAAATTTACTTAACAGCCTTGTCTTCCCCCAGAAATATGAGGTTGTTTCTTTTTTGTTTGATTCCTTTATGCTGGTCGGTGTCCTAATTCTTCAAGTGTTTCCCATGTGACTCTACCTTGTACAATGTAACTGTTCCGTTTCTTTTTTTAGTTTTTGCAATACATGCTAATTTTCAGCCTTAGAGGAGAAAATAAGGGCTTAGAAGTCTTCGCTAGGCTGATGAAACCAAGTTAAATCCCTGTTGCAGAAGCTTTTAGAAAACACATCCAAATAAGTTAATCTTATGTGGATACAAAAGCAATGCTCATTTTACGTTCTTTAATGTGTTAAATCATATGATGTACAAGAAGGGAAAACTTACAGTCAAATATCCTGAACTTTATTCTTTTATTATTAGTACATATACTTTCTTTTT
Coding sequences of Glyma.01G146900
>Glyma.01g146900.1 sequence-type=CDS polypeptide=Glyma.01g146900.1.p locus=Glyma.01g146900 ID=Glyma.01g146900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTGAGTACTGGGTCAGCCAGGGCAACAAATGGTGCGACTTTTGCAAAATTTATATATCAAACAACCCTGGAAGCATAAGGAATCATGAGCTTGGCCAACGTCACAAAGATAATGTTTCCAAGAGGTTGGCTGCTATGAGAAAAGAGAATATTGCTAAGGAGAAAGAACAGAAAGAAACTGCTCGTGCCATTGAGCAAATTGAAGCAAAAGCGCAACGTAGCTATCAAAAGGATAAAGTGAAGTTTGAGGAGACGAGAGAATCACATGAATTGGATGACCAAGAATGGGAGTTTGACAGCAGTACAGGCTATTACTACCATAAAACAAATGGATTTTACTATGACCAAAAGTCAGGATTTTACTACTCTGATGCCATTGGCAAGTGGGTGACACAGGAAGAAGCATATGCCTCCCCTCACTTTACATCTAATGCCGGGCACAATGGACCAACTGCAAAGAAATCCTTGTCAACATCACAGTCCAAATCAGATGAAAACAAAGGAAATAAGTTTAATAATGGATCTTCACCAGGGCCAGTTGTTACAACTTCTTTGAATCCCAAAAGAAATGTGAAAGCTGCTCCTTCATCTCTTGCGGTTGGAAAGAGAAAGAGACCTGGTGAAAAATCCAAGGTTATCTCTGATGAAGAAAAAGCAGCTCTAAAGGCAAGAGAGGCTGCAAGGAAAAGAGTACAGGAGAGGGAGAAACCCTTGCTTGGCCTTTACAACAAGCCTTACTAA

>Glyma.01g146900.2 sequence-type=CDS polypeptide=Glyma.01g146900.2.p locus=Glyma.01g146900 ID=Glyma.01g146900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAGAAAAGAGAATATTGCTAAGGAGAAAGAACAGAAAGAAACTGCTCGTGCCATTGAGCAAATTGAAGCAAAAGCGCAACGTAGCTATCAAAAGGATAAAGTGAAGTTTGAGGAGACGAGAGAATCACATGAATTGGATGACCAAGAATGGGAGTTTGACAGCAGTACAGGCTATTACTACCATAAAACAAATGGATTTTACTATGACCAAAAGTCAGGATTTTACTACTCTGATGCCATTGGCAAGTGGGTGACACAGGAAGAAGCATATGCCTCCCCTCACTTTACATCTAATGCCGGGCACAATGGACCAACTGCAAAGAAATCCTTGTCAACATCACAGTCCAAATCAGATGAAAACAAAGGAAATAAGTTTAATAATGGATCTTCACCAGGGCCAGTTGTTACAACTTCTTTGAATCCCAAAAGAAATGTGAAAGCTGCTCCTTCATCTCTTGCGGTTGGAAAGAGAAAGAGACCTGGTGAAAAATCCAAGGTTATCTCTGATGAAGAAAAAGCAGCTCTAAAGGCAAGAGAGGCTGCAAGGAAAAGAGTACAGGAGAGGGAGAAACCCTTGCTTGGCCTTTACAACAAGCCTTACTAA

>Glyma.01g146900.3 sequence-type=CDS polypeptide=Glyma.01g146900.3.p locus=Glyma.01g146900 ID=Glyma.01g146900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAATTGGATGACCAAGAATGGGAGTTTGACAGCAGTACAGGCTATTACTACCATAAAACAAATGGATTTTACTATGACCAAAAGCAAGTGGGTGACACAGGAAGAAGCATATGCCTCCCCTCACTTTACATCTAATGCCGGGCACAATGGACCAACTGCAAAGAAATCCTTGTCAACATCACAGTCCAAATCAGATGAAAACAAAGGAAATAAGTTTAATAATGGATCTTCACCAGGGCCAGTTGTTACAACTTCTTTGAATCCCAAAAGAAATGTGAAAGCTGCTCCTTCATCTCTTGCGGTTGGAAAGAGAAAGAGACCTGGTGAAAAATCCAAGGTTATCTCTGATGAAGAAAAAGCAGCTCTAAAGGCAAGAGAGGCTGCAAGGAAAAGAGTACAGGAGAGGGAGAAACCCTTGCTTGGCCTTTACAACAAGCCTTACTAA
Predicted protein sequences of Glyma.01G146900
>Glyma.01g146900.1.p sequence-type=predicted peptide transcript=Glyma.01g146900.1 locus=Glyma.01g146900 ID=Glyma.01g146900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTEYWVSQGNKWCDFCKIYISNNPGSIRNHELGQRHKDNVSKRLAAMRKENIAKEKEQKETARAIEQIEAKAQRSYQKDKVKFEETRESHELDDQEWEFDSSTGYYYHKTNGFYYDQKSGFYYSDAIGKWVTQEEAYASPHFTSNAGHNGPTAKKSLSTSQSKSDENKGNKFNNGSSPGPVVTTSLNPKRNVKAAPSSLAVGKRKRPGEKSKVISDEEKAALKAREAARKRVQEREKPLLGLYNKPY*

>Glyma.01g146900.2.p sequence-type=predicted peptide transcript=Glyma.01g146900.2 locus=Glyma.01g146900 ID=Glyma.01g146900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRKENIAKEKEQKETARAIEQIEAKAQRSYQKDKVKFEETRESHELDDQEWEFDSSTGYYYHKTNGFYYDQKSGFYYSDAIGKWVTQEEAYASPHFTSNAGHNGPTAKKSLSTSQSKSDENKGNKFNNGSSPGPVVTTSLNPKRNVKAAPSSLAVGKRKRPGEKSKVISDEEKAALKAREAARKRVQEREKPLLGLYNKPY*

>Glyma.01g146900.3.p sequence-type=predicted peptide transcript=Glyma.01g146900.3 locus=Glyma.01g146900 ID=Glyma.01g146900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MNWMTKNGSLTAVQAITTIKQMDFTMTKSKWVTQEEAYASPHFTSNAGHNGPTAKKSLSTSQSKSDENKGNKFNNGSSPGPVVTTSLNPKRNVKAAPSSLAVGKRKRPGEKSKVISDEEKAALKAREAARKRVQEREKPLLGLYNKPY*






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