|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G60540.1 | AT | Preprotein translocase Sec, Sec61-beta subunit protein | JGI | N/A | IEA |
| GO:0006616 | GO-bp | SRP-dependent cotranslational protein targeting to membrane, translocation | EnsemblGenomes | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | EnsemblGenomes | N/A | IEA |
| GO:0015031 | GO-bp | protein transport | EnsemblGenomes | N/A | IEA |
| GO:0031204 | GO-bp | posttranslational protein targeting to membrane, translocation | EnsemblGenomes | N/A | IEA |
| GO:0065009 | GO-bp | regulation of molecular function | EnsemblGenomes | N/A | IEA |
| GO:0005783 | GO-cc | endoplasmic reticulum | EnsemblGenomes | N/A | IEA |
| GO:0005784 | GO-cc | Sec61 translocon complex | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0031205 | GO-cc | endoplasmic reticulum Sec complex | EnsemblGenomes | N/A | IEA |
| GO:0005086 | GO-mf | ARF guanyl-nucleotide exchange factor activity | EnsemblGenomes | N/A | IEA |
| GO:0015450 | GO-mf | P-P-bond-hydrolysis-driven protein transmembrane transporter activity | EnsemblGenomes | N/A | IEA |
| KOG3457 | KOG | Sec61 protein translocation complex, beta subunit | JGI | N/A | IEA |
| PTHR13509 | Panther | SEC61BETA-PROV PROTEIN | JGI | N/A | IEA |
| PF03911 | PFAM | Sec61beta family | JGI | N/A | IEA |
|
Glyma.01G133400 not represented in the dataset |
Glyma.01G133400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.03g034100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g133400 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma01g32870 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g133400.1 sequence-type=CDS polypeptide=Glyma.01g133400.1.p locus=Glyma.01g133400 ID=Glyma.01g133400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCTTTAGGTGGAACAGCTCCCCCGAGAGGAAGTGCAGCAGCTACTGCCAGCATGAGGAGAAGGAGAACAACCGGTGGTGCGGCCTCTGGAGGAGCAGCTGGAACTATGCTCCAATTTTACACTGATGATGCCCCTGGACTCAAGATCTCCCCAAATGTGGTTCTTGTAATGAGCATTGGCTTTATAGCATTTGTTGCCATCCTTCATGTGATGGGCAAGCTGTACTTTGTGCGTAGGGAGGCTTAG
>Glyma.01g133400.1.p sequence-type=predicted peptide transcript=Glyma.01g133400.1 locus=Glyma.01g133400 ID=Glyma.01g133400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MALGGTAPPRGSAAATASMRRRRTTGGAASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||