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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT3G60750.1 | AT | Transketolase | JGI | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0016311 | GO-bp | dephosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0008195 | GO-mf | phosphatidate phosphatase activity | EnsemblGenomes | N/A | IEA |
| PTHR11624 | Panther | DEHYDROGENASE RELATED | JGI | N/A | IEA |
| PTHR11624:SF1 | Panther | TRANSKETOLASE | JGI | N/A | IEA |
| PF00456 | PFAM | Transketolase, thiamine diphosphate binding domain | JGI | N/A | IEA |
| CALVIN-PWY | SoyCyc9 | Calvin-Benson-Bassham cycle | Plant Metabolic Network | ISS | |
| NONOXIPENT-PWY | SoyCyc9 | pentose phosphate pathway (non-oxidative branch) | Plant Metabolic Network | ISS | |
| PENTOSE-P-PWY | SoyCyc9 | pentose phosphate pathway | Plant Metabolic Network | ISS | |
| PHOTOALL-PWY | SoyCyc9 | oxygenic photosynthesis | Plant Metabolic Network | ISS | |
| PWY-5723 | SoyCyc9 | Rubisco shunt | Plant Metabolic Network | ISS | |
| GN7V-49313 | SoyCyc9-rxn | transketolase | Plant Metabolic Network | ISS |
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Glyma.01G120200 not represented in the dataset |
Glyma.01G120200 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma01g29600 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g120200.1 sequence-type=CDS polypeptide=Glyma.01g120200.1.p locus=Glyma.01g120200 ID=Glyma.01g120200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGTTTGGTTGCTGCTGCCGAGGTTTTTGAAGCACATCGGATATCTGCAAAAGAATTTAGAAGTTCTACATTATCCATAATTAAGAATGAAAATCTTGTTCTGAAGTTTAGAGAGAGGTATCTACTGTGGGAAAAGGTTGCTCCTCTTGTACTTGGAATAACTGTATTTGGTTTAGACTTACTTATTGAGCCTAAAGATACAATTCCAGTGGGACTGGATGATGTAGTGAAGGCCAAGAATGATGCTCCTGGACCAGCTTCATCTGGACGCAGATGGAGACTTTGGCCTATGCCTTTTCGAAGAGTCAAGACAATTGATCACACTAATAGTGTATCAAGTGAGGAGGTATTTGTAGATTCTAAGTCTGATTTCCAAACTTCTATTGTCGAGCCATCTCCAACATCTGCTATGCCTATTTCCAAATTCATTACTATTTCACAGGTAATCACTACCATTGGATTTGCTTATCCAAACAAGGCTAATTCCTACAGTTGGATGCTACAAGGAAGAATCTTGGATAGCCATACGAGCCTTTCCATGTGCCAGAAGATGTCAAGAAGTATGGATGGGGAGCATTGGAGTCGCCATACCCCTAAGGGTACTAAACTTGAAGCTGAGTGGAATGCCAAGTTTGTGGAATATGAGAAGAAATACAATGAGGAAGCTGCAAAGCTAAAGGCTATTATTATTGGCAAATTACCAGGGAGAAAGCGCGCACTTCTGTACATTGCATCTTTACTCATCATCCATCTTTTTGCTTCATGCATCTTTCATACATACACTCCAAAAAGCCCTGCAGATGCTACAAGAAATTTAGTTGCCATATGGATTTCTGCACTGTGTGAAGCTGGAGTTATTTATCCAATAGAGCATTTGGCAAGCTTCAGGGCAATGCCAAACACTTTCATGCTTCGTCCAGCTGATGGTAATGACACTGCTGGATCATACAAAGTTGTTGTGGTTAACAAGAAGAGACCCTCAATTGTTGCACTTTGTTGGCAAAAGTTGACCCAACTTCCAAGAACTTCTATTGAGGGAGTTGAAAAGGGTGGCTACCTCATTTCCGACAACTCATCAAGTAACAAGCCTGATGTTATTTTGATTGGAACTGGTTCTAAGTTGGAAATTGTTGTTGCTTTTGCTGAGGATCTATGGAAGGAAGGAAAAGTTGTCATAGTTTCAGATGAATTCAACGAGAGTGTTCTACCTGCTTCAATAACAGCTAGAGTTAGCATTGAGGCAGGATCAACATTTGGTTGCCACAATCGAGCGTTCGCTAAGCGCAACACTCCTGGGCTAAGCGTGAGGAAGAATCCAGAAGAAGATGAGTTGTACAGCGAGAAAGGCGCGCTAAGCCAAAAATCACTAACGTGCACTAAGCGGTCCATATATTTTGTGAGGGGAGTTTGCATTGGGATTAAGAGCTTTTCATGTCTAGGGTTTCTTAAGAGAGAAAGCTCCAAATGCATGCTTTGTCAGGGTCATTCAACAGTGGAAACTGGTCTAACTCTAAAGTCCTTGATAGTGCAGGGTTGA
>Glyma.01g120200.1.p sequence-type=predicted peptide transcript=Glyma.01g120200.1 locus=Glyma.01g120200 ID=Glyma.01g120200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGLVAAAEVFEAHRISAKEFRSSTLSIIKNENLVLKFRERYLLWEKVAPLVLGITVFGLDLLIEPKDTIPVGLDDVVKAKNDAPGPASSGRRWRLWPMPFRRVKTIDHTNSVSSEEVFVDSKSDFQTSIVEPSPTSAMPISKFITISQVITTIGFAYPNKANSYSWMLQGRILDSHTSLSMCQKMSRSMDGEHWSRHTPKGTKLEAEWNAKFVEYEKKYNEEAAKLKAIIIGKLPGRKRALLYIASLLIIHLFASCIFHTYTPKSPADATRNLVAIWISALCEAGVIYPIEHLASFRAMPNTFMLRPADGNDTAGSYKVVVVNKKRPSIVALCWQKLTQLPRTSIEGVEKGGYLISDNSSSNKPDVILIGTGSKLEIVVAFAEDLWKEGKVVIVSDEFNESVLPASITARVSIEAGSTFGCHNRAFAKRNTPGLSVRKNPEEDELYSEKGALSQKSLTCTKRSIYFVRGVCIGIKSFSCLGFLKRESSKCMLCQGHSTVETGLTLKSLIVQG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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