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Report for Sequence Feature Glyma.01G051300

Feature Type:gene_model
Chromosome:Gm01
Start:6060477
stop:6062256
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.01G051300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G69490.1AT NAC-like, activated by AP3/PI JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
PF02365PFAM No apical meristem (NAM) protein JGI N/AIEA

Proteins Associated with Glyma.01G051300
LocusGene SymbolProtein Name
NAC1 NAC domain protein NAC1
NAC003 NAC Transcription Factor gene 3

Expression Patterns of Glyma.01G051300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.01G051300
ParalogEvidenceComments
Glyma.02g109800 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01G051300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.01g051300 Wm82.a4.v1ISS As supplied by JGI
Glyma01g06150 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.01G051300
>Glyma.01g051300.1 sequence-type=CDS polypeptide=Glyma.01g051300.1.p locus=Glyma.01g051300 ID=Glyma.01g051300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGAATAGAACAAGCTCTGTACTCCCACCTGGCTTCAGGTTTCACCCCACTGATGAGGAACTAATTGTGTACTACCTTTGCAACCAAGCCTCATCAAGGCCATGCCCTGCATCAATCATTCCAGAAGTGGATATCTATAAGTTTGATCCATGGGAATTACCTGATAAAACAGACTTTGGAGAAAAGGAGTGGTACTTCTTTAGCCCACGAGAGAGGAAGTATCCAAATGGGGTGAGGCCTAATAGAGCAACCGTGTCTGGGTATTGGAAGGCCACTGGGACAGATAAAGCAATCTATAGTGGGTCTAAGCATGTAGGGGTGAAGAAGGCTTTGGTTTTTTACAAGGGTAAGCCACCAAAGGGTCTCAAGACAGATTGGATTATGCATGAGTATAGATTAATTGGATCAAGAAGACAAGCCAATAGACAAGTTGGATCCATGAGGCTAGATGACTGGGTCTTGTGTAGGATTTACAAGAAGAAGAATATTGGAAAATCAATGGAGGCAAAAGAGGACTACCCAATAGCCCAAATCAACCTTACACCAGCAAACAATAACAGTGAACAAGAATTGGTGAAATTTCCAAGGACTAGTTCCCTTACTCATCTTTTGGAAATGGATTACTTGGGTCCAATATCACATATATTACCTGATGCCTCATACAATTCAACCTTTGATTTTCAAATTAACACTGCCAATGGTGGAATAGACCCGTTCGTAAAACCACAGCTGGTTGAAATCCCTTATGCAACAGATTCAGGGAAGTACCAGGTGAAACAGAATAGCACCATCAACCCCACCATATTTGTGAACCAAGTGTATGATCAAAGAGGATAA
Predicted protein sequences of Glyma.01G051300
>Glyma.01g051300.1.p sequence-type=predicted peptide transcript=Glyma.01g051300.1 locus=Glyma.01g051300 ID=Glyma.01g051300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENRTSSVLPPGFRFHPTDEELIVYYLCNQASSRPCPASIIPEVDIYKFDPWELPDKTDFGEKEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHVGVKKALVFYKGKPPKGLKTDWIMHEYRLIGSRRQANRQVGSMRLDDWVLCRIYKKKNIGKSMEAKEDYPIAQINLTPANNNSEQELVKFPRTSSLTHLLEMDYLGPISHILPDASYNSTFDFQINTANGGIDPFVKPQLVEIPYATDSGKYQVKQNSTINPTIFVNQVYDQRG*






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