|
A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G19800.1 | AT | myo-inositol oxygenase 2 | JGI | N/A | IEA |
| GO:0019310 | GO-bp | inositol catabolic process | EnsemblGenomes | N/A | IEA |
| GO:0019310 | GO-bp | inositol catabolic process | JGI | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | JGI | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | EnsemblGenomes | N/A | IEA |
| GO:0005506 | GO-mf | iron ion binding | JGI | N/A | IEA |
| GO:0050113 | GO-mf | inositol oxygenase activity | EnsemblGenomes | N/A | IEA |
| GO:0050113 | GO-mf | inositol oxygenase activity | JGI | N/A | IEA |
| KOG1573 | KOG | Aldehyde reductase | JGI | N/A | IEA |
| PTHR12588 | Panther | MYOINOSITOL OXYGENASE | JGI | N/A | IEA |
| PF05153 | PFAM | Family of unknown function (DUF706) | JGI | N/A | IEA |
| PWY-4841 | SoyCyc9 | UDP-α-D-glucuronate biosynthesis (from myo-inositol) | Plant Metabolic Network | ISS | |
| GN7V-64077 | SoyCyc9-rxn | inositol oxygenase | Plant Metabolic Network | ISS |
|
Glyma.01G005100 not represented in the dataset |
Glyma.01G005100 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.07g126600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.01g005100 | Wm82.a4.v1 | ISS | As supplied by JGI |
| Glyma01g00840 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.01g005100.2 sequence-type=transcript locus=Glyma.01g005100 ID=Glyma.01g005100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 GTCTGGGTTACGAAACTATATAGCTCCACTCACAATCAATTTAGTGATCATAACAATTTCATAAGATTTTCTTGTATATATTCCTAGCATTTTGGTTTCAGTTGCTTTCCATAATAATTAAGAAGAATGGTCGTTCTCATCGAGCAATCAGAGCTAACAAGACCGCAAGCTGAGGAGAACAATGATGATTTGGTATTGGATGGTGGTTTTTCCTTGCTCAAATCACCTTCACATGTTGGATTTACAGTCCCTGATATCAATTCATATGGTCACTCCTTCAGAAATTATTATGATGAAAGCGAAAGGAATAAGTCTGTGGAGGAACTTTACCGACAACAACACACGAATCAAACATATGAATTTGCTAAGAAGATGAGAGAGGAATATGGGAAACTGAATAAAGTAGAAGTGGGTATATGGGAATGTTGTGAGATGCTTGATAAAATTGTGGATGCAAGTGATCCTGATTTAGAAGAATCTCAAATTCAGCATGCATTGCAGACAGCTGAAGCTGCTAGAAATGACTACCCTAATGAAGACTGGCTACATTTGACCGCTCTCATTCATGATCTCGGAAAGGTTCTTCTCCTTCCAAGTTTTGGTGGGCTTCCTCAATGGGCTGTTGTCGGAGATTCGTTTCCCCTTGGTTGTGCTTTTCATGAAGCTAATACTCACTTCAAGTACTTCAAGGACAACCCAGATAGCAACAATCCAGCTTATAATACTAAAAAGGGCATATATGATGAAGGATGCGGACTGGACAATGTAATGATGTCATGGGGACATGATGAGTACATGTATTTGGTGAGTCTATGTAAACATGGAGAGATATCAATTCGACATCCCATACAAATGTTAATGTTATGCTAAAATTTTATTGAGACAATAATACTGTAGCATGTTATGTATTATTCGTGATCTAATATATGCACAAACATATCAACGCACTGAAATCTATATATGCAGGTTACTAAGGGGAATAACACCACTTTACCGTCGGAGGCATTGTTCATTATTCGATATCACTCTTTTCATCGTACGTATTTTTACCCAGTACGTTCTGCAGTGAACTAATATATGCCCTTGTCAAATATATATAACTAACAATAATATAACATGTGATTTCCAATTTACATATAATCTTGCAGCTTTGTACCAGACAGGAGCGTACAAACACTTGTATAGTGAAGAGGATGTTAAGAACCTCAAGTGGCTAGAAATATTTCAGTAAGCTAATTATTTTTGCTTTAGATTTTAGCATATCAGTTTATATCTTGTCTTCAACTTAACGTGATGAATACATAATGGAACTGATTATGTTTCTTATAAATTATGTGATACGAAACACAGCAAGTATGATCTCTACAGCAAGAGCAATGTGCTAATTGATGTTGAAAAAGTTAAGCCATACTATATGTCGCTCATTAAGAAGTATTTCCCGCCAAAGCTCATATGGTAAATCTGTCTAGAAATACTAGTAACATATTTTATAATGTATTTCTTTTTAACACATTTTTTACTATTATCTGAAATTTGTTTAAAGTTATAATATTATATGAGTCTCAGTGAGCTCTATTTATAATTTATAATTTTTAATGAGTTTGAAATAATAGTATAGACGTGTATTTAAAGAAGTGTGTAAAAAATTGTATTACTTGCCAACTATCTTAAATATTGAATTAAAGGCAAAGGAAAGTGGAGATGAACTGCAGGGACTGTATCAAAATTATCATTTATTTGCTTCTTTTTTAAATTGTATCCTTAAGGATTGAATTTCGTATTATCAATTAATGTGTAATAACGTATATGTTGTATCTATTGTGGTCTGTTGCATGATGTAAAAGTATATCGTTTGATGATTC >Glyma.01g005100.3 sequence-type=transcript locus=Glyma.01g005100 ID=Glyma.01g005100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 GTCTGGGTTACGAAACTATATAGCTCCACTCACAATCAATTTAGTGATCATAACAATTTCATAAGATTTTCTTGTATATATTCCTAGCATTTTGGTTTCAGTTGCTTTCCATAATAATTAAGAAGAATGGTCGTTCTCATCGAGCAATCAGAGCTAACAAGACCGCAAGCTGAGGAGAACAATGATGATTTGGTATTGGATGGTGGTTTTTCCTTGCTCAAATCACCTTCACATGTTGGATTTACAGTCCCTGATATCAATTCATATGGTCACTCCTTCAGAAATTATTATGATGAAAGCGAAAGGAATAAGTCTGTGGAGGAACTTTACCGACAACAACACACGAATCAAACATATGAATTTGCTAAGAAGATGAGAGAGGAATATGGGAAACTGAATAAAGTAGAAGTGGGTATATGGGAATGTTGTGAGATGCTTGATAAAATTGTGGATGCAAGTGATCCTGATTTAGAAGAATCTCAAATTCAGCATGCATTGCAGACAGCTGAAGCTGCTAGAAATGACTACCCTAATGAAGACTGGCTACATTTGACCGCTCTCATTCATGATCTCGGAAAGGTTCTTCTCCTTCCAAGTTTTGGTGGGCTTCCTCAATGGGCTGTTGTCGGAGATTCGTTTCCCCTTGGTTGTGCTTTTCATGAAGCTAATACTCACTTCAAGTACTTCAAGGACAACCCAGATAGCAACAATCCAGCTTATAATACTAAAAAGGGCATATATGATGAAGGATGCGGACTGGACAATGTAATGATGTCATGGGGACATGATGAGTACATGTATTTGGTGAGTCTATGTAAACATGGAGAGATATCAATTCGACATCCCATACAAATGTTAATGTTATGCTAAAATTTTATTGAGACAATAATACTGTAGCATGTTATGTATTATTCGTGATCTAATATATGCACAAACATATCAACGCACTGAAATCTATATATGCAGGTTACTAAGGGGAATAACACCACTTTACCGTCGGAGGCATTGTTCATTATTCGATATCACTCTTTTCATCGTACGTATTTTTACCCAGTACGTTCTGCAGTGAACTAATATATGCCCTTGTCAAATATATATAACTAACAATAATATAACATGTGATTTCCAATTTACATATAATCTTGCAGCTTTGTACCAGACAGGAGCGTACAAACACTTGTATAGTGAAGAGGATGTTAAGAACCTCAAGTGGCTAGAAATATTTCACAAGTATGATCTCTACAGCAAGAGCAATGTGCTAATTGATGTTGAAAAAGTTAAGCCATACTATATGTCGCTCATTAAGAAGTATTTCCCGCCAAAGCTCATATGGTAAATCTGTCTAGAAATACTAGTAACATATTTTATAATGTATTTCTTTTTAACACATTTTTTACTATTATCTGAAATTTGTTTAAAGTTATAATATTATATGAGTCTCAGTGAGCTCTATTTATAATTTATAATTTTTAATGAGTTTGAAATAATAGTATAGACGTGTATTTAAAGAAGTGTGTAAAAAATTGTATTACTTGCCAACTATCTTAAATATTGAATTAAAGGCAAAGGAAAGTGGAGATGAACTGCAGGGACTGTATCAAAATTATCATTTATTTGCTTCTTTTTTAAATTGTATCCTTAAGGATTGAATTTCGTATTATCAATTAATGTGTAATAACGTATATGTTGTATCTATTGTGGTCTGTTGCATGATGTAAAAGTATATCGTTTGATGATTC >Glyma.01g005100.4 sequence-type=transcript locus=Glyma.01g005100 ID=Glyma.01g005100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 GTCTGGGTTACGAAACTATATAGCTCCACTCACAATCAATTTAGTGATCATAACAATTTCATAAGATTTTCTTGTATATATTCCTAGCATTTTGGTTTCAGTTGCTTTCCATAATAATTAAGAAGAATGGTCGTTCTCATCGAGCAATCAGAGCTAACAAGACCGCAAGCTGAGGAGAACAATGATGATTTGGTATTGGATGGTGGTTTTTCCTTGCTCAAATCACCTTCACATGTTGGATTTACAGTCCCTGATATCAATTCATATGGTCACTCCTTCAGAAATTATTATGATGAAAGCGAAAGGAATAAGTCTGTGGAGGAACTTTACCGACAACAACACACGAATCAAACATATGAATTTGCTAAGAAGATGAGAGAGGAATATGGGAAACTGAATAAAGTAGAAGTGGGTATATGGGAATGTTGTGAGATGCTTGATAAAATTGTGGATGCAAGTGATCCTGATTTAGAAGAATCTCAAATTCAGCATGCATTGCAGACAGCTGAAGCTGCTAGAAATGACTACCCTAATGAAGACTGGCTACATTTGACCGCTCTCATTCATGATCTCGGAAAGGTTCTTCTCCTTCCAAGTTTTGGTGGGCTTCCTCAATGGGCTGTTGTCGGAGATTCGTTTCCCCTTGGTTGTGCTTTTCATGAAGCTAATACTCACTTCAAGTACTTCAAGGACAACCCAGATAGCAACAATCCAGCTTATAATACTAAAAAGGGCATATATGATGAAGGATGCGGACTGGACAATGTAATGATGTCATGGGGACATGATGAGTACATGTATTTGGTTACTAAGGGGAATAACACCACTTTACCGTCGGAGGCATTGTTCATTATTCGATATCACTCTTTTCATCCTTTGTACCAGACAGGAGCGTACAAACACTTGTATAGTGAAGAGGATGTTAAGAACCTCAAGTGGCTAGAAATATTTCAGTAAGCTAATTATTTTTGCTTTAGATTTTAGCATATCAGTTTATATCTTGTCTTCAACTTAACGTGATGAATACATAATGGAACTGATTATGTTTCTTATAAATTATGTGATACGAAACACAGCAAGTATGATCTCTACAGCAAGAGCAATGTGCTAATTGATGTTGAAAAAGTTAAGCCATACTATATGTCGCTCATTAAGAAGGTGGGCAACAAAACTTGTGTGATGCCTGTATCTTAAGTTAGATATACTTTAATGGAATAAAATATCCTTTTTGTGTT
>Glyma.01g005100.1 sequence-type=CDS polypeptide=Glyma.01g005100.1.p locus=Glyma.01g005100 ID=Glyma.01g005100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTCGTTCTCATCGAGCAATCAGAGCTAACAAGACCGCAAGCTGAGGAGAACAATGATGATTTGGTATTGGATGGTGGTTTTTCCTTGCTCAAATCACCTTCACATGTTGGATTTACAGTCCCTGATATCAATTCATATGGTCACTCCTTCAGAAATTATTATGATGAAAGCGAAAGGAATAAGTCTGTGGAGGAACTTTACCGACAACAACACACGAATCAAACATATGAATTTGCTAAGAAGATGAGAGAGGAATATGGGAAACTGAATAAAGTAGAAGTGGGTATATGGGAATGTTGTGAGATGCTTGATAAAATTGTGGATGCAAGTGATCCTGATTTAGAAGAATCTCAAATTCAGCATGCATTGCAGACAGCTGAAGCTGCTAGAAATGACTACCCTAATGAAGACTGGCTACATTTGACCGCTCTCATTCATGATCTCGGAAAGGTTCTTCTCCTTCCAAGTTTTGGTGGGCTTCCTCAATGGGCTGTTGTCGGAGATTCGTTTCCCCTTGGTTGTGCTTTTCATGAAGCTAATACTCACTTCAAGTACTTCAAGGACAACCCAGATAGCAACAATCCAGCTTATAATACTAAAAAGGGCATATATGATGAAGGATGCGGACTGGACAATGTAATGATGTCATGGGGACATGATGAGTACATGTATTTGGTTACTAAGGGGAATAACACCACTTTACCGTCGGAGGCATTGTTCATTATTCGATATCACTCTTTTCATCCTTTGTACCAGACAGGAGCGTACAAACACTTGTATAGTGAAGAGGATGTTAAGAACCTCAAGTGGCTAGAAATATTTCACAAGTATGATCTCTACAGCAAGAGCAATGTGCTAATTGATGTTGAAAAAGTTAAGCCATACTATATGTCGCTCATTAAGAAGTATTTCCCGCCAAAGCTCATATGGTAA >Glyma.01g005100.2 sequence-type=CDS polypeptide=Glyma.01g005100.2.p locus=Glyma.01g005100 ID=Glyma.01g005100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTCGTTCTCATCGAGCAATCAGAGCTAACAAGACCGCAAGCTGAGGAGAACAATGATGATTTGGTATTGGATGGTGGTTTTTCCTTGCTCAAATCACCTTCACATGTTGGATTTACAGTCCCTGATATCAATTCATATGGTCACTCCTTCAGAAATTATTATGATGAAAGCGAAAGGAATAAGTCTGTGGAGGAACTTTACCGACAACAACACACGAATCAAACATATGAATTTGCTAAGAAGATGAGAGAGGAATATGGGAAACTGAATAAAGTAGAAGTGGGTATATGGGAATGTTGTGAGATGCTTGATAAAATTGTGGATGCAAGTGATCCTGATTTAGAAGAATCTCAAATTCAGCATGCATTGCAGACAGCTGAAGCTGCTAGAAATGACTACCCTAATGAAGACTGGCTACATTTGACCGCTCTCATTCATGATCTCGGAAAGGTTCTTCTCCTTCCAAGTTTTGGTGGGCTTCCTCAATGGGCTGTTGTCGGAGATTCGTTTCCCCTTGGTTGTGCTTTTCATGAAGCTAATACTCACTTCAAGTACTTCAAGGACAACCCAGATAGCAACAATCCAGCTTATAATACTAAAAAGGGCATATATGATGAAGGATGCGGACTGGACAATGTAATGATGTCATGGGGACATGATGAGTACATGTATTTGGTGAGTCTATGTAAACATGGAGAGATATCAATTCGACATCCCATACAAATGTTAATGTTATGCTAA >Glyma.01g005100.3 sequence-type=CDS polypeptide=Glyma.01g005100.3.p locus=Glyma.01g005100 ID=Glyma.01g005100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTCGTTCTCATCGAGCAATCAGAGCTAACAAGACCGCAAGCTGAGGAGAACAATGATGATTTGGTATTGGATGGTGGTTTTTCCTTGCTCAAATCACCTTCACATGTTGGATTTACAGTCCCTGATATCAATTCATATGGTCACTCCTTCAGAAATTATTATGATGAAAGCGAAAGGAATAAGTCTGTGGAGGAACTTTACCGACAACAACACACGAATCAAACATATGAATTTGCTAAGAAGATGAGAGAGGAATATGGGAAACTGAATAAAGTAGAAGTGGGTATATGGGAATGTTGTGAGATGCTTGATAAAATTGTGGATGCAAGTGATCCTGATTTAGAAGAATCTCAAATTCAGCATGCATTGCAGACAGCTGAAGCTGCTAGAAATGACTACCCTAATGAAGACTGGCTACATTTGACCGCTCTCATTCATGATCTCGGAAAGGTTCTTCTCCTTCCAAGTTTTGGTGGGCTTCCTCAATGGGCTGTTGTCGGAGATTCGTTTCCCCTTGGTTGTGCTTTTCATGAAGCTAATACTCACTTCAAGTACTTCAAGGACAACCCAGATAGCAACAATCCAGCTTATAATACTAAAAAGGGCATATATGATGAAGGATGCGGACTGGACAATGTAATGATGTCATGGGGACATGATGAGTACATGTATTTGGTGAGTCTATGTAAACATGGAGAGATATCAATTCGACATCCCATACAAATGTTAATGTTATGCTAA >Glyma.01g005100.4 sequence-type=CDS polypeptide=Glyma.01g005100.4.p locus=Glyma.01g005100 ID=Glyma.01g005100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGTCGTTCTCATCGAGCAATCAGAGCTAACAAGACCGCAAGCTGAGGAGAACAATGATGATTTGGTATTGGATGGTGGTTTTTCCTTGCTCAAATCACCTTCACATGTTGGATTTACAGTCCCTGATATCAATTCATATGGTCACTCCTTCAGAAATTATTATGATGAAAGCGAAAGGAATAAGTCTGTGGAGGAACTTTACCGACAACAACACACGAATCAAACATATGAATTTGCTAAGAAGATGAGAGAGGAATATGGGAAACTGAATAAAGTAGAAGTGGGTATATGGGAATGTTGTGAGATGCTTGATAAAATTGTGGATGCAAGTGATCCTGATTTAGAAGAATCTCAAATTCAGCATGCATTGCAGACAGCTGAAGCTGCTAGAAATGACTACCCTAATGAAGACTGGCTACATTTGACCGCTCTCATTCATGATCTCGGAAAGGTTCTTCTCCTTCCAAGTTTTGGTGGGCTTCCTCAATGGGCTGTTGTCGGAGATTCGTTTCCCCTTGGTTGTGCTTTTCATGAAGCTAATACTCACTTCAAGTACTTCAAGGACAACCCAGATAGCAACAATCCAGCTTATAATACTAAAAAGGGCATATATGATGAAGGATGCGGACTGGACAATGTAATGATGTCATGGGGACATGATGAGTACATGTATTTGGTTACTAAGGGGAATAACACCACTTTACCGTCGGAGGCATTGTTCATTATTCGATATCACTCTTTTCATCCTTTGTACCAGACAGGAGCGTACAAACACTTGTATAGTGAAGAGGATGTTAAGAACCTCAAGTGGCTAGAAATATTTCAGTAA
>Glyma.01g005100.1.p sequence-type=predicted peptide transcript=Glyma.01g005100.1 locus=Glyma.01g005100 ID=Glyma.01g005100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVVLIEQSELTRPQAEENNDDLVLDGGFSLLKSPSHVGFTVPDINSYGHSFRNYYDESERNKSVEELYRQQHTNQTYEFAKKMREEYGKLNKVEVGIWECCEMLDKIVDASDPDLEESQIQHALQTAEAARNDYPNEDWLHLTALIHDLGKVLLLPSFGGLPQWAVVGDSFPLGCAFHEANTHFKYFKDNPDSNNPAYNTKKGIYDEGCGLDNVMMSWGHDEYMYLVTKGNNTTLPSEALFIIRYHSFHPLYQTGAYKHLYSEEDVKNLKWLEIFHKYDLYSKSNVLIDVEKVKPYYMSLIKKYFPPKLIW* >Glyma.01g005100.2.p sequence-type=predicted peptide transcript=Glyma.01g005100.2 locus=Glyma.01g005100 ID=Glyma.01g005100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVVLIEQSELTRPQAEENNDDLVLDGGFSLLKSPSHVGFTVPDINSYGHSFRNYYDESERNKSVEELYRQQHTNQTYEFAKKMREEYGKLNKVEVGIWECCEMLDKIVDASDPDLEESQIQHALQTAEAARNDYPNEDWLHLTALIHDLGKVLLLPSFGGLPQWAVVGDSFPLGCAFHEANTHFKYFKDNPDSNNPAYNTKKGIYDEGCGLDNVMMSWGHDEYMYLVSLCKHGEISIRHPIQMLMLC* >Glyma.01g005100.3.p sequence-type=predicted peptide transcript=Glyma.01g005100.3 locus=Glyma.01g005100 ID=Glyma.01g005100.3.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVVLIEQSELTRPQAEENNDDLVLDGGFSLLKSPSHVGFTVPDINSYGHSFRNYYDESERNKSVEELYRQQHTNQTYEFAKKMREEYGKLNKVEVGIWECCEMLDKIVDASDPDLEESQIQHALQTAEAARNDYPNEDWLHLTALIHDLGKVLLLPSFGGLPQWAVVGDSFPLGCAFHEANTHFKYFKDNPDSNNPAYNTKKGIYDEGCGLDNVMMSWGHDEYMYLVSLCKHGEISIRHPIQMLMLC* >Glyma.01g005100.4.p sequence-type=predicted peptide transcript=Glyma.01g005100.4 locus=Glyma.01g005100 ID=Glyma.01g005100.4.Wm82.a2.v1 annot-version=Wm82.a2.v1 MVVLIEQSELTRPQAEENNDDLVLDGGFSLLKSPSHVGFTVPDINSYGHSFRNYYDESERNKSVEELYRQQHTNQTYEFAKKMREEYGKLNKVEVGIWECCEMLDKIVDASDPDLEESQIQHALQTAEAARNDYPNEDWLHLTALIHDLGKVLLLPSFGGLPQWAVVGDSFPLGCAFHEANTHFKYFKDNPDSNNPAYNTKKGIYDEGCGLDNVMMSWGHDEYMYLVTKGNNTTLPSEALFIIRYHSFHPLYQTGAYKHLYSEEDVKNLKWLEIFQ*
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