Glyma.01G003200

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Report for Sequence Feature Glyma.01G003200

Feature Type:	gene_model
Chromosome:	Gm01
Start:	370674
stop:	375704
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.01G003200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G29540.2	AT	bacterial transferase hexapeptide repeat-containing protein	JGI	N/A	IEA
GO:0008610	GO-bp	lipid biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0008780	GO-mf	acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity	EnsemblGenomes	N/A	IEA
PTHR23416	Panther	SIALIC ACID SYNTHASE-RELATED	JGI	N/A	IEA
PTHR23416:SF15	Panther		JGI	N/A	IEA
NAGLIPASYN-PWY	SoyCyc9	lipid IV_A biosynthesis	Plant Metabolic Network		ISS
GN7V-41470	SoyCyc9-rxn	acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.01G003200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.01G003200 not represented in the dataset	Glyma.01G003200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.01G003200

Paralog	Evidence	Comments
Glyma.07g128800	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.01G003200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.01g003200	Wm82.a4.v1	ISS	As supplied by JGI
Glyma01g00620	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.01G003200

Limit To All Plant Sequences

>Glyma.01g003200.2 sequence-type=transcript locus=Glyma.01g003200 ID=Glyma.01g003200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGAAAAGCAAAGCAAGGATGTGGTGGCTCCTTCTCTTGGTGTTTCGATTGGTCCCTTTTGTTCTGTTAGTGCCTCTGCAAAGCTGGGGAATGGCTGTCAACTATATCCCGGAAGCCATGTTTTTGGAATTACAAAGTTAGGGGACAATTGCACGTTGATGACGTGAGTTCTGAGTTCATATGATGATCATCCTGGATGTACCGTCATTGGAAGCAATAACACAATAGGATATCACGCTGTGATTGGTGTCAAATGTCAAGACATGAAATACAAGGACTACGTTCACACTGCAGGTGTGACTGTTGTTCACCAATTCTGTCATCTTGGCTCTTTCTCTTTTCTTGGTGGTGGTTCCCTGGTTTCACAATATGTCCCAAAGTACATGATGGCAGCCGGAGAAAGAGCTGAGCTTCGTGGTCTAAATTTAGTCGGCCTTACTCGATGTGGATTCAGCGTTGCAGAGATCAGGAGCATGAGAGCTGCTTATCGAAAGATATTCATGTGTGTTGATGCAAATGCTGTGTCTTTAGAAGAAAGGCTTGCAGAAGTGGAGCAGCATGAGGAATTGGTTCATGTTCCTGCTATGCGTGCTATGTTGCAGTCTATTCGCAACTCCTTTGCTGAAAATCGTCGCGGAATATGCAAGTTTAGACACTGGAATGCCTCTTGAAGCATGCTGAGGTCATGAGTTCTTTTCTCTCCATCAAGAAGCCTACGGGAAACGTTTTACGATGGAGCAGTTCTTTTCCTTGTTATAATCTTTGTAAGAGTTGTATTATTAAGCGATTGTAGGAAGTGAGAAATCGTTGTGAATCTCGAATTTTGTATAGGTTCAGATTTGTATACTTAACTCGGGTCAGGAATCTCTACCTTCAACTTATTCTCCACACAATAATAGACTAGTCTTGCGTAAATTTTAGCCTGAAATGAATAAAATTTCACAGTAGATGATTTCTCGGTACACTAATTTGTTGCATATAGCTAAAATTGCAACAACAAAAAAAAAAAGAAATAGAATTGCAAAGCAAGCTAAAATATCAACAATGGATTGTACCCAGAAGCTGAATGCAGGACCGAAAACATTCTATACATCATTCCCACAATAAAAAATCAATGTATTACGTATATGTATTTTATCGAGTAGGGGGAAATGTTTCCACAACTGCAGGCCGATGGATGAAATCTCAAACATGACGTCTCAGTAGCATTTGAAAAGTACATCAATACTACATTAAATGTGTGCTCTGATACTATCAGCTACACCAGCAGCAAGCAAAAGGTATCCTCTGACGGTGCATATTTTGCTCTCTAAATGAGTTATGCATCAACCACCTGAAAACCTGAAATGGACAAAAACTAATGAACCCCACCACGGCTTTCCAATTTAACAAAATGATGCACATGACACCAAAATCAGGAAGGAATCTGTCATAGATTTACTCGTCATTTTTTCAAAATATTGATAGAACTGAGACAATTGGTGAATTATAGCATGTGCAATGAAGATCTTGCATGAAAAACAGTATATTCTAGGATGTTCGGAAGGAAATCAAAGCATGAATGTCTCACTGAATCTGCACCCGCCCTTAATGAACTTGGGCTGATGTTCAACAATCTATAGACATTTATATGCTCATattggaattgaattgaaatttacaatgacagtgaaattATGCGGTATCATACCTAACGCAACTTTTTTACACGTTTAGAGGGTCGTGCTGTCTCCTTTTTTGATTCCTCTGGAGTTTTTAAGTCAATATATGGCTGAAACGATCGAGACATAGGTAAAGTATCATCAATTAAATCAAAGCACTGATATAACCTATTCTCACTTCATATTTATATTTTAAGTAAAGGCATCTGTTGTCCAAGGTTCAATGTACTGTTGCCAACTAATGTGATTCATTATTGAAACAGATTGTATTCCCCTAAAGATATTTACATTCCCAAAATCAAGAATCTGTAAGCCCTTGTCCTCTTTTGTCTCACAGAATTAAGGCTTCATATTTGTAAATTATATTCTGCTATGTGTTTGATCCATTTTCATTACCAATACCATATGTTTCTCTGTTTGATGAAACAGTGATTAGTTATAAAATTTTGAAGAATGGTCCAACTTGACTAGATTAAAATTATGAAGTAGCTTAAAAACTTTGTACTTGGCTTCTCTCAAGTGAGTTGGTACACTTTAGAAGAGATAATGCATAGTAAAACCAACGATTGAAATATTTTTTGTTAATCATGTATATGTATTTTGTTACAATCTTAACAATTATCCCCCTGTTTAAATGAACTTCTAAAATAAGTACTTATAAGAGAAGAAAATAAAAAAAAAAATATATATAATTGAGCTTTTACCATAAGGTAAAATCAACTCATACACTTCAGGATTTGGAGAAACTAATTAACTCATACACTTCAGGTTTTGGAGAAACTAGACGAGGAGCTTC

>Glyma.01g003200.3 sequence-type=transcript locus=Glyma.01g003200 ID=Glyma.01g003200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGAAAAGCAAAGCAAGGATGTGGTGGCTCCTTCTCTTGGTGTTTCGATTGGTCCCTTTTGTTCTGTTAGTGCCTCTGCAAAGCTGGGGAATGGCTGTCAACTATATCCCGGAAGCCATGTTTTTGGAATTACAAAGTTAGGGGACAATTGCACGTTGATGACGTGAGTTCTGAGTTCATATGATGATCATCCTGGATGTACCGTCATTGGAAGCAATAACACAATAGGATATCACGCTGTGATTGGTGTCAAATGTCAAGACATGAAATACAAGGTTATTGGTAATGCCAATTTTATAATGGGATCTTGTCATATTACCCATGATTGCAAGATTGGTAACAACAATATTCTTGCCAACAATACTCTTCTAGCTGGGCATGTTGAAGTGGAAGACTACGTTCACACTGCAGGTGTGACTGTTGTTCACCAATTCTGTCATCTTGGCTCTTTCTCTTTTCTTGGTGGTGGTTCCCTGGTTTCACAATATGTCCCAAAGTACATGATGGCAGCCGGAGAAAGAGCTGAGCTTCGTGGTCTAAATTTAGTCGGCCTTACTCGATGTGGATTCAGCGTTGCAGAGATCAGGAGCATGAGAGCTGCTTATCGAAAGATATTCATGTGTGTTGATGCAAATGCTGTGTCTTTAGAAGAAAGGCTTGCAGAAGTGGAGCAGCATGAGGAATTGGTTCATGTTCCTGCTATGCGTGCTATGTTGCAGTCTATTCGCAACTCCTTTGCTGAAAATCGTCGCGGAATATGCAAGTTTAGACACTGGAATGCCTCTTGAAGCATGCTGAGGTCATGAGTTCTTTTCTCTCCATCAAGAAGCCTACGGGAAACGTTTTACGATGGAGCAGTTCTTTTCCTTGTTATAATCTTTGTAAGAGTTGTATTATTAAGCGATTGTAGGAAGTGAGAAATCGTTGTGAATCTCGAATTTTGTATAGGTTCAGATTTGTATACTTAACTCGGGTCAGGAATCTCTACCTTCAACTTATTCTCCACACAATAATAGACTAGTCTTGCGTAAATTTTAGCCTGAAATGAATAAAATTTCACAGTAGATGATTTCTCGGTACACTAATTTGTTGCATATAGCTAAAATTGCAACAACAAAAAAAAAAAGAAATAGAATTGCAAAGCAAGCTAAAATATCAACAATGGATTGTACCCAGAAGCTGAATGCAGGACCGAAAACATTCTATACATCATTCCCACAATAAAAAATCAATGTATTACGTATATGTATTTTATCGAGTAGGGGGAAATGTTTCCACAACTGCAGGCCGATGGATGAAATCTCAAACATGACGTCTCAGTAGCATTTGAAAAGTACATCAATACTACATTAAATGTGTGCTCTGATACTATCAGCTACACCAGCAGCAAGCAAAAGGTATCCTCTGACGGTGCATATTTTGCTCTCTAAATGAGTTATGCATCAACCACCTGAAAACCTGAAATGGACAAAAACTAATGAACCCCACCACGGCTTTCCAATTTAACAAAATGATGCACATGACACCAAAATCAGGAAGGAATCTGTCATAGATTTACTCGTCATTTTTTCAAAATATTGATAGAACTGAGACAATTGGTGAATTATAGCATGTGCAATGAAGATCTTGCATGAAAAACAGTATATTCTAGGATGTTCGGAAGGAAATCAAAGCATGAATGTCTCACTGAATCTGCACCCGCCCTTAATGAACTTGGGCTGATGTTCAACAATCTATAGACATTTATATGCTCATattggaattgaattgaaatttacaatgacagtgaaattATGCGGTATCATACCTAACGCAACTTTTTTACACGTTTAGAGGGTCGTGCTGTCTCCTTTTTTGATTCCTCTGGAGTTTTTAAGTCAATATATGGCTGAAACGATCGAGACATAGGTAAAGTATCATCAATTAAATCAAAGCACTGATATAACCTATTCTCACTTCATATTTATATTTTAAGTAAAGGCATCTGTTGTCCAAGGTTCAATGTACTGTTGCCAACTAATGTGATTCATTATTGAAACAGATTGTATTCCCCTAAAGATATTTACATTCCCAAAATCAAGAATCTGTAAGCCCTTGTCCTCTTTTGTCTCACAGAATTAAGGCTTCATATTTGTAAATTATATTCTGCTATGTGTTTGATCCATTTTCATTACCAATACCATATGTTTCTCTGTTTGATGAAACAGTGATTAGTTATAAAATTTTGAAGAATGGTCCAACTTGACTAGATTAAAATTATGAAGTAGCTTAAAAACTTTGTACTTGGCTTCTCTCAAGTGAGTTGGTACACTTTAGAAGAGATAATGCATAGTAAAACCAACGATTGAAATATTTTTTGTTAATCATGTATATGTATTTTGTTACAATCTTAACAATTATCCCCCTGTTTAAATGAACTTCTAAAATAAGTACTTATAAGAGAAGAAAATAAAAAAAAAAATATATATAATTGAGCTTTTACCATAAGGTAAAATCAACTCATACACTTCAGGATTTGGAGAAACTAATTAACTCATACACTTCAGGTTTTGGAGAAACTAGACGAGGAGCTTC

Coding sequences of Glyma.01G003200

Limit To All Plant Sequences

>Glyma.01g003200.1 sequence-type=CDS polypeptide=Glyma.01g003200.1.p locus=Glyma.01g003200 ID=Glyma.01g003200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATACAAGCCAGAGGATGAATGTTACCTGGAAGTTGGACATAATAATGATATTAGGGAACATTCTTCAATCCACCGATCTTCAAAATCAACCGATAGGACAGTTATTGGTAATGCCAATTTTATAATGGGATCTTGTCATATTACCCATGATTGCAAGATTGGTAACAACAATATTCTTGCCAACAATACTCTTCTAGCTGGGCATGTTGAAGTGGAAGACTACGTTCACACTGCAGGTGTGACTGTTGTTCACCAATTCTGTCATCTTGGCTCTTTCTCTTTTCTTGGTGGTGGTTCCCTGGTTTCACAATATGTCCCAAAGTACATGATGGCAGCCGGAGAAAGAGCTGAGCTTCGTGGTCTAAATTTAGTCGGCCTTACTCGATGTGGATTCAGCGTTGCAGAGATCAGGAGCATGAGAGCTGCTTATCGAAAGATATTCATGTGTGTTGATGCAAATGCTGTGTCTTTAGAAGAAAGGCTTGCAGAAGTGGAGCAGCATGAGGAATTGGTTCATGTTCCTGCTATGCGTGCTATGTTGCAGTCTATTCGCAACTCCTTTGCTGAAAATCGTCGCGGAATATGCAAGTTTAGACACTGGAATGCCTCTTGA

>Glyma.01g003200.2 sequence-type=CDS polypeptide=Glyma.01g003200.2.p locus=Glyma.01g003200 ID=Glyma.01g003200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATACAAGGACTACGTTCACACTGCAGGTGTGACTGTTGTTCACCAATTCTGTCATCTTGGCTCTTTCTCTTTTCTTGGTGGTGGTTCCCTGGTTTCACAATATGTCCCAAAGTACATGATGGCAGCCGGAGAAAGAGCTGAGCTTCGTGGTCTAAATTTAGTCGGCCTTACTCGATGTGGATTCAGCGTTGCAGAGATCAGGAGCATGAGAGCTGCTTATCGAAAGATATTCATGTGTGTTGATGCAAATGCTGTGTCTTTAGAAGAAAGGCTTGCAGAAGTGGAGCAGCATGAGGAATTGGTTCATGTTCCTGCTATGCGTGCTATGTTGCAGTCTATTCGCAACTCCTTTGCTGAAAATCGTCGCGGAATATGCAAGTTTAGACACTGGAATGCCTCTTGA

>Glyma.01g003200.3 sequence-type=CDS polypeptide=Glyma.01g003200.3.p locus=Glyma.01g003200 ID=Glyma.01g003200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAATACAAGGTTATTGGTAATGCCAATTTTATAATGGGATCTTGTCATATTACCCATGATTGCAAGATTGGTAACAACAATATTCTTGCCAACAATACTCTTCTAGCTGGGCATGTTGAAGTGGAAGACTACGTTCACACTGCAGGTGTGACTGTTGTTCACCAATTCTGTCATCTTGGCTCTTTCTCTTTTCTTGGTGGTGGTTCCCTGGTTTCACAATATGTCCCAAAGTACATGATGGCAGCCGGAGAAAGAGCTGAGCTTCGTGGTCTAAATTTAGTCGGCCTTACTCGATGTGGATTCAGCGTTGCAGAGATCAGGAGCATGAGAGCTGCTTATCGAAAGATATTCATGTGTGTTGATGCAAATGCTGTGTCTTTAGAAGAAAGGCTTGCAGAAGTGGAGCAGCATGAGGAATTGGTTCATGTTCCTGCTATGCGTGCTATGTTGCAGTCTATTCGCAACTCCTTTGCTGAAAATCGTCGCGGAATATGCAAGTTTAGACACTGGAATGCCTCTTGA

Predicted protein sequences of Glyma.01G003200

Limit To All Plant Sequences

>Glyma.01g003200.1.p sequence-type=predicted peptide transcript=Glyma.01g003200.1 locus=Glyma.01g003200 ID=Glyma.01g003200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKYKPEDECYLEVGHNNDIREHSSIHRSSKSTDRTVIGNANFIMGSCHITHDCKIGNNNILANNTLLAGHVEVEDYVHTAGVTVVHQFCHLGSFSFLGGGSLVSQYVPKYMMAAGERAELRGLNLVGLTRCGFSVAEIRSMRAAYRKIFMCVDANAVSLEERLAEVEQHEELVHVPAMRAMLQSIRNSFAENRRGICKFRHWNAS*

>Glyma.01g003200.2.p sequence-type=predicted peptide transcript=Glyma.01g003200.2 locus=Glyma.01g003200 ID=Glyma.01g003200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKYKDYVHTAGVTVVHQFCHLGSFSFLGGGSLVSQYVPKYMMAAGERAELRGLNLVGLTRCGFSVAEIRSMRAAYRKIFMCVDANAVSLEERLAEVEQHEELVHVPAMRAMLQSIRNSFAENRRGICKFRHWNAS*

>Glyma.01g003200.3.p sequence-type=predicted peptide transcript=Glyma.01g003200.3 locus=Glyma.01g003200 ID=Glyma.01g003200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKYKVIGNANFIMGSCHITHDCKIGNNNILANNTLLAGHVEVEDYVHTAGVTVVHQFCHLGSFSFLGGGSLVSQYVPKYMMAAGERAELRGLNLVGLTRCGFSVAEIRSMRAAYRKIFMCVDANAVSLEERLAEVEQHEELVHVPAMRAMLQSIRNSFAENRRGICKFRHWNAS*

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