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Integrating Genetics and Genomics to Advance Soybean Research



SoyBase Expression Explorer
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Glyma14g17903 not represented in the dataset
Glyma14g17903 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model,
and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome
Glyma14g17903 not represented in the dataset
Danzer et al. 2015, Plant Phys 168(3):1025-10352.
> Down-Regulating the Expression of 53 Soybean Transcription Factor Genes Uncovers a Role for SPEECHLESS in Initiating Stomatal Cell Lineages During Embryo Development
Pelletier et al. 2017, PNAS DOI:/10.1073/pnas.1707957114
> LEC1 sequentially regulates the transcription of genes involved in diverse developmental processes during seed development

Click picture to see a full size image

All values in RPMK or FPMK

GSE57349

Williams 82 Globular stage embryoWilliams 82 Globular stage embryo Williams 82 Globular stage endosperm Williams 82 Globular stage seed coat endothelium Williams 82 Globular stage seed coat epidermis Williams 82 Globular stage seed coat hilum Williams 82 Globular stage seed coat inner integument Williams 82 Globular stage seed coat outer integument Williams 82 Globular stage suspensor
00, 00, 0, 00, 0, 00, 0, 00.0563179, 0, 00, 0, 0, 00, 0, 00.137223, 0, 0
Graph this experiment

GSE57606

Williams 82 Cotyledon stage embryo Williams 82 Cotyledon stage embryo axis Williams 82 Cotyledon stage embryo cotyledon Williams 82 Cotyledon stage endosperm Williams 82 Cotyledon stage seed coat endothelium Williams 82 Cotyledon stage seed coat epidermis Williams 82 Cotyledon stage seed coat hilum Williams 82 Cotyledon stage seed coat inner integument Williams 82 Cotyledon stage seed coat outer integument Williams 82 Cotyledon stage suspensor
0, 0, 00, 0, 00, 0, 00, 0, 00, 0, 00, 0, 0.1102430, 0, 00, 0, 00, 0, 00, 0, 0
Graph this experiment

GSE61857

Williams 82 Cotyledon Stage1Williams 82 Cotyledon Stage2Williams 82 Cotyledon Stage3Williams 82 Leaf Stage1Williams 82 Leaf Stage3Williams 82 Leaf Stage5Williams 82 Leaf Stage7Williams 82 Leaf Stage8
1, 1, 11, 1, 11, 1, 11, 1, 11, 1, 11, 1, 11, 1, 11, 1, 1
Graph this experiment All values in intensity units
Glyma14g17903 is not represented on the SoyChip

Download query results HERE

Most RNAseq experiments utilized Wm82.a1 gene models whereas all of the Affymetrix SoyChip experiments were mapped to Wm82.a1 gene models. This means that if your query utilized a Wm82.a2 gene model name you probably will receive little to no results. If you did use a Wm82.a2 gene model name (Glyma.01g010000 for example), you will need to convert your Wm82.a2 gene model name to it's Wm82.a1 corresponding name using the SoyBase gene model correspondence tool. Once you have converted your gene model name you can re-run the Expression Explorer page and paste in the Wm82.a1 corresponding gene model ID into the input box on that page.

To convert your gene model ID click the SUBMIT button below






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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