SoyBase Expression Explorer

Tissue and developmental expression pattern of Glyma10g27710

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome
Glyma10g27710 not represented in the dataset
Danzer et al. 2015, Plant Phys 168(3):1025-10352. > Down-Regulating the Expression of 53 Soybean Transcription Factor Genes Uncovers a Role for SPEECHLESS in Initiating Stomatal Cell Lineages During Embryo Development	Pelletier et al. 2017, PNAS DOI:/10.1073/pnas.1707957114 > LEC1 sequentially regulates the transcription of genes involved in diverse developmental processes during seed development

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RNAseq tissue, developmental and treatment expression patterns of Glyma10g27710

All values in RPMK or FPMK

GSE33155

Glaborus Clark shoot tip	Wild-type Clark shoot tip
0	0

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GSE42550

Williams cotyledon stage 1	Williams cotyledon stage 2	Williams cotyledon stage 3	Williams cotyledon stage 4	Williams cotyledon stage 5	Williams cotyledon stage 6	Williams cotyledon stage 7
0, 0	0, 0	0, 0	0, 0	0, 0	0, 0	0, 0

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GSE42871

Williams 43 100-200 mg seed cotyledon	Williams 43 400-500 mg seed cotyledon	Williams 43 5-6 mg seed cotyledon	Williams 43 5-6 mg seed seed coat	Williams 43 5-6 mg whole seed	Williams 43 dry seed	Williams 43 whole seed 12-14 DAF	Williams 43 whole seed 22-24 DAF	Williams 43 whole seed 4 DAF
0, 0	0, 0	0	0	0.01, 0	0, 0	0.29, 0.09	0, 0	0.11, 1.53

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GSE49097

Hutchesen high vapor pressure deficit	Hutchesen low vapor pressure deficit	PI 416937 high vapor pressure deficit	PI 416937 low vapor pressure deficit	PI 471938 high vapor pressure deficit	PI 471938 low vapor pressure deficit
0, 0	0, 0	0, 0	0, 0	0, 0	0, 0

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GSE54903

Clark mutant seed coat	Clark wild type seed coat	Harsoy mutant seed coat	Harsoy wild type seed coat
0, 0, 0	0, 0, 0	0, 0	0, 0, 0

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GSE57349

Williams 82 Globular stage embryo	Williams 82 Globular stage endosperm	Williams 82 Globular stage seed coat endothelium	Williams 82 Globular stage seed coat epidermis	Williams 82 Globular stage seed coat hilum	Williams 82 Globular stage seed coat inner integument	Williams 82 Globular stage seed coat outer integument	Williams 82 Globular stage suspensor
0, 0, 0	0, 0, 0	0, 0, 0	0, 0, 0	0, 0.112636, 0	0, 0, 0, 0	0, 0, 0	0, 0, 0

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GSE57350

Williams 82 Heart stage embryo	Williams 82 Heart stage endosperm	Williams 82 Heart stage seed coat endothelium	Williams 82 Heart stage seed coat epidermis	Williams 82 Heart stage seed coat hilum	Williams 82 Heart stage seed coat inner integument	Williams 82 Heart stage seed coat outer integument	Williams 82 Heart stage suspensor
0, 0, 0	0, 0.106571, 0	0, 0, 0	0, 0, 0	0, 0, 0	0, 0, 0	0, 0, 0	0, 0, 0

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GSE61857

Williams 82 Cotyledon Stage1	Williams 82 Cotyledon Stage2	Williams 82 Cotyledon Stage3	Williams 82 Leaf Stage1	Williams 82 Leaf Stage3	Williams 82 Leaf Stage5	Williams 82 Leaf Stage7	Williams 82 Leaf Stage8
1, 1, 1	1, 1, 1	1, 1, 1	1, 1, 1	1, 1, 1	1, 1, 1	1, 1, 1	1, 1, 1

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GSE67779

Wyandot resistant NIL 0 hr aphid exposure	Wyandot resistant NIL 24 hr aphid exposure	Wyandot resistant NIL 4 hr aphid exposure	Wyandot resistant NIL 48 hr aphid exposure	Wyandot resistant NIL 8 hr aphid exposure	Wyandot susceptible NIL 0 hr aphid exposure	Wyandot susceptible NIL 24 hr aphid exposure	Wyandot susceptible NIL 4 hr aphid exposure	Wyandot susceptible NIL 48 hr aphid exposure	Wyandot susceptible NIL 8 hr aphid exposure
0, 0	0, 0	0, 0	0, 0	0, 0	0, 0	0, 0	0, 0	0, 0	0, 0

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Affymetrix SoyChipI tissue, developmental and treatment expression patterns of Glyma10g27710

All values in intensity units

Glyma10g27710 is not represented on the SoyChip

Download query results HERE

Most RNAseq experiments utilized Wm82.a1 gene models whereas all of the Affymetrix SoyChip experiments were mapped to Wm82.a1 gene models. This means that if your query utilized a Wm82.a2 gene model name you probably will receive little to no results. If you did use a Wm82.a2 gene model name (Glyma.01g010000 for example), you will need to convert your Wm82.a2 gene model name to it's Wm82.a1 corresponding name using the SoyBase gene model correspondence tool. Once you have converted your gene model name you can re-run the Expression Explorer page and paste in the Wm82.a1 corresponding gene model ID into the input box on that page.

To convert your gene model ID click the SUBMIT button below

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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