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Integrating Genetics and Genomics to Advance Soybean Research



SoyBase Expression Explorer
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model,
and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome
Danzer et al. 2015, Plant Phys 168(3):1025-10352.
> Down-Regulating the Expression of 53 Soybean Transcription Factor Genes Uncovers a Role for SPEECHLESS in Initiating Stomatal Cell Lineages During Embryo Development
Pelletier et al. 2017, PNAS DOI:/10.1073/pnas.1707957114
> LEC1 sequentially regulates the transcription of genes involved in diverse developmental processes during seed development

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All values in RPMK or FPMK

GSE59076

Fiskeby III 25 ppb ozone 5 hr exposureFiskeby III 25 ppb ozone 5:40 hr exposureFiskeby III 25 ppb ozone 6:20 hr exposureFiskeby III 25 ppb ozone 7:00 hr exposureFiskeby III 75 ppb ozone 5 hr exposureFiskeby III 75 ppb ozone 5:40 hr exposureFiskeby III 75 ppb ozone 6:20 hr exposureFiskeby III 75 ppb ozone 7:00 hr exposureMandarin-Ottawa 25 ppb ozone 5 hr exposureMandarin-Ottawa 25 ppb ozone 5:40 hr exposureMandarin-Ottawa 25 ppb ozone 6:20 hr exposureMandarin-Ottawa 25 ppb ozone 7:00 hr exposureMandarin-Ottawa 75 ppb ozone 5 hr exposureMandarin-Ottawa 75 ppb ozone 5:40 hr exposureMandarin-Ottawa 75 ppb ozone 6:20 hr exposureMandarin-Ottawa 75 ppb ozone 7:00 hr exposure
0, 2.54, 4.33, 0, 1.971.93, 6.09, 3.55, 5.3, 00, 0, 5.9, 2.34, 4.522.22, 5.86, 1.7, 3.47, 00, 2.97, 4.19, 0, 1.980, 0, 6.28, 1.56, 5.880, 8.44, 0, 8.55, 3.460, 0, 3.86, 1.23, 2.974.33, 0, 1.97, 0, 2.547.72, 0, 8.87, 0, 03.51, 0, 3.24, 0, 1.465.72, 1.6, 4.1, 0, 2.484.73, 6.16, 0, 5.43, 011.42, 0, 10.49, 0, 00, 4.53, 2.16, 7.07, 03.24, 3.47, 0, 1.46, 0
Graph this experiment

GSE89126

Clark 18a k1 black saddle Clark 18a k1 yellow saddle Clark 8 K1 black saddle Clark 8 K1 yellow sectors
4.31, 4.235.1, 5.564.43, 3.84, 5.36.38, 5.31, 6.12
Graph this experiment All values in intensity units

GDS3229

Soybean strain 2601RSoybean strain BayfieldSoybean strain MandarinSoybean strain PS46RSoybean strain S03W4
88, 69, 91, 71, 8957, 44, 64, 72, 6573, 60, 77, 71, 7150, 64, 93, 67, 101109, 66, 85, 56, 71
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GDS3230

pooled soybean leaves inoculated with HW94-1 harvested 12hourspooled soybean leaves inoculated with HW94-1 harvested 24 hourspooled soybean leaves inoculated with HW94-1 harvested 48 hourspooled soybean leaves inoculated with HW94-1 harvested 6 hourspooled soybean leaves inoculated with TW72-1 harvested 12 hourspooled soybean leaves inoculated with TW72-1 harvested 24 hourspooled soybean leaves inoculated with TW72-1 harvested 48 hourspooled soybean leaves inoculated with TW72-1 harvested 6 hourspooled soybean leaves mock- inoculated harvested time 0
315, 184, 248655, 662424, 278, 46780, 73, 83210, 216, 219331, 630425, 296, 44094, 82, 77516, 335, 641
Graph this experiment

GDS3231

First trifoliolate leaf, 48h after sprayed with lipo-chitooligosaccharide (NOD factor)First trifoliolate leaf, 48h after sprayed with water control
179, 222, 187218, 215, 164
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GDS3234

Glycine max rust inoculated leaf (Treatment)Glycine max uninoculated leaf (Control)
547.845, 400.744, 480.211427.014, 446.23, 726.293
Graph this experiment

GDS3235

Asgrow A3237 early maturation-stage axis epidermis captured by LCMAsgrow A3237 early maturation-stage axis parenchyma captured by LCMAsgrow A3237 early maturation-stage axis plumule captured by LCMAsgrow A3237 early maturation-stage axis root meristem captured by LCMAsgrow A3237 early maturation-stage axis shoot meristem captured by LCMAsgrow A3237 early maturation-stage axis vascular bundle captured by LCMAsgrow A3237 early maturation-stage cotyledon abaxial epidermis captured by LCMAsgrow A3237 early maturation-stage cotyledon abaxial parenchyma captured by LCMAsgrow A3237 early maturation-stage cotyledon adaxial epidermis captured by LCMAsgrow A3237 early maturation-stage cotyledon adaxial parenchyma captured by LCMAsgrow A3237 early maturation-stage cotyledon vascular bundle captured by LCMAsgrow A3237 early maturation-stage seedAsgrow A3237 early maturation-stage seed coat aleurone captured by LCMAsgrow A3237 early maturation-stage seed coat hilum captured by LCMAsgrow A3237 early maturation-stage seed coat hourglass captured by LCMAsgrow A3237 early maturation-stage seed coat palisade captured by LCMAsgrow A3237 early maturation-stage seed coat parenchyma captured by LCM
662.6, 192.2336.8, 452.3673.4, 855.8639.2, 542.1575.2, 511.71460.3, 1417.4511.1, 318.5292.7, 332.5399, 308.1164.3, 317.42600, 2392.3597.6, 472.7604.9, 329.5445.8, 756.3405.7, 361.21021.8, 1218.9758.3, 1395
Graph this experiment

GDS3238

Asgrow A3237 globular stage embryo proper captured by LCMAsgrow A3237 globular stage endosperm captured by LCMAsgrow A3237 globular stage endothelium captured by LCMAsgrow A3237 globular stage epidermis captured by LCMAsgrow A3237 globular stage hilum captured by LCMAsgrow A3237 globular stage inner integument captured by LCMAsgrow A3237 globular stage outer integument captured by LCMAsgrow A3237 globular stage seedAsgrow A3237 globular stage suspensor captured by LCM
282.6, 542.3, 597.3703.3, 1523.6, 1163.7428.3, 478.8, 1379.9365.8, 1152.3, 1298.5672.5, 571.6, 600.71146.1, 924.4, 848.3788.5, 400.1, 603.41062, 683.5978.6, 317.7, 50.6
Graph this experiment

GDS3239

Asgrow A3237 heart stage embryo proper captured by LCMAsgrow A3237 heart stage endosperm captured by LCMAsgrow A3237 heart stage endothelium captured by LCMAsgrow A3237 heart stage epidermis captured by LCMAsgrow A3237 heart stage hilum captured by LCMAsgrow A3237 heart stage inner integument captured by LCMAsgrow A3237 heart stage outer integument captured by LCMAsgrow A3237 heart stage seedAsgrow A3237 heart stage suspensor captured by LCMAsgrow A3237 leaf
668.9, 410.7, 633.61204.9, 1428, 973.1695.3, 682.4743.9, 773.3536, 437.8838.9, 1160.5950.3, 893.4653.2, 743.921.9, 552.5, 79.3376.4, 461.2
Graph this experiment

GDS3241

Asgrow A3237 cotyledon stage embryo proper captured by LCMAsgrow A3237 cotyledon stage endosperm captured by LCMAsgrow A3237 cotyledon stage endothelium captured by LCMAsgrow A3237 cotyledon stage epidermis captured by LCMAsgrow A3237 cotyledon stage hilum captured by LCMAsgrow A3237 cotyledon stage inner integument captured by LCMAsgrow A3237 cotyledon stage outer integument captured by LCMAsgrow A3237 cotyledon stage seedAsgrow A3237 cotyledon stage suspensor captured by LCM
791.1, 741.7744.4, 867.6975, 933.3816.4, 586725.3, 547.9944.5, 1295.81907.7, 1939.3796.2, 1069578.8, 563.4
Graph this experiment

GDS3242

Soybean cultivar ATHOW - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar ATHOW - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar ATHOW - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar ATHOW - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar GENERAL - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar GENERAL - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar GENERAL - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar GENERAL - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar OX20-8 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar OX20-8 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar OX20-8 - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar OX20-8 - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar PI291327 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar PI291327 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar PI291327 - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar PI291327 - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar V710370 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar V710370 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar V710370 - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar V710370 - P.sojae Inoculated: 72 hours post inoculationSoybean cultivar WILLIAMS - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar WILLIAMS - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar WILLIAMS - P.sojae Inoculated: 120 hours post inoculationSoybean cultivar WILLIAMS - P.sojae Inoculated: 72 hours post inoculation
100, 124, 101, 9086, 93, 106, 8595, 93, 89, 10488, 97, 76, 94105, 132, 97, 10289, 85, 92, 11399, 75, 113, 9885, 94, 76, 7088, 86, 97, 8770, 83, 85, 79109, 90, 78, 7583, 76, 84, 7966, 91, 71, 6571, 53, 70, 8977, 67, 46, 6056, 71, 73, 8682, 101, 77, 105120, 90, 91, 10979, 92, 73, 8268, 81, 75, 8479, 94, 90, 7991, 83, 97, 8896, 87, 86, 7373, 83, 75, 68104, 106, 87, 12889, 84, 73, 7285, 75, 91, 10491, 96, 74, 8378, 80, 79, 7456, 66, 68, 7184, 98, 85, 10185, 74, 76, 69
Graph this experiment

GDS3244

Soybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 24 hours post inoculationSoybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 48 hours post inoculationSoybean cultivar CONRAD - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 24 hours post inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 48 hours post inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar CONRAD - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 24 hours post inoculationSoybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 48 hours post inoculationSoybean cultivar SLOAN - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 24 hours post inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 48 hours post inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar SLOAN - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar V71-370 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar V71-370 - Mock Inoculated (Inoculated with water + agar): 24 hours post inoculationSoybean cultivar V71-370 - Mock Inoculated (Inoculated with water + agar): 48 hours post inoculationSoybean cultivar V71-370 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar V71-370 - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar V71-370 - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar V71-370 - P.sojae Inoculated: 24 hours post inoculationSoybean cultivar V71-370 - P.sojae Inoculated: 48 hours post inoculationSoybean cultivar V71-370 - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar V71-370 - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar VP-RIL9 - Mock Inoculated (Inoculated with water + agar): 120 hours post inoculationSoybean cultivar VP-RIL9 - Mock Inoculated (Inoculated with water + agar): 24 hours post inoculationSoybean cultivar VP-RIL9 - Mock Inoculated (Inoculated with water + agar): 48 hours post inoculationSoybean cultivar VP-RIL9 - Mock Inoculated (Inoculated with water + agar): 72 hours post inoculationSoybean cultivar VP-RIL9 - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar VP-RIL9 - P.sojae Inoculated: 120 hours post inoculation : Sample taken from the upper side of the inoculationSoybean cultivar VP-RIL9 - P.sojae Inoculated: 24 hours post inoculationSoybean cultivar VP-RIL9 - P.sojae Inoculated: 48 hours post inoculationSoybean cultivar VP-RIL9 - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the lower side of the inoculationSoybean cultivar VP-RIL9 - P.sojae Inoculated: 72 hours post inoculation : Sample taken from the upper side of the inoculation
102, 100, 112, 9346, 64, 51, 5760, 65, 58, 4986, 94, 106, 8486, 88, 93, 10194, 94, 97, 9562, 62, 69, 5553, 76, 56, 7989, 74, 90, 9496, 87, 102, 96106, 76, 76, 7647, 40, 47, 5257, 44, 59, 4767, 107, 94, 7170, 77, 98, 8384, 105, 96, 8959, 60, 64, 5049, 76, 64, 6265, 66, 76, 7677, 85, 89, 61116, 102, 91, 10059, 58, 56, 4862, 62, 66, 5788, 96, 79, 8093, 84, 76, 100110, 78, 109, 10656, 58, 35, 6283, 65, 76, 6683, 89, 82, 7787, 96, 92, 8391, 88, 96, 7332, 54, 57, 3655, 67, 58, 5478, 90, 74, 8986, 41, 80, 9482, 49, 67, 12155, 60, 60, 7273, 71, 80, 6286, 92, 69, 6489, 76, 71, 101
Graph this experiment

GSE10251

Shoot apical meristem after one short-day treatmentVegetative shoot apical meristemshoot apical meristem from soybean subjected to 4 complete short-day cyclesshoot apical meristem from soybean under 4 complete short-day treatmentshoot apical meristem micro-dissected from 2 short-day treated soybean plantsshoot apical meristem micro-dissected from soybean plants after 6 short-day treatmentshoot apical meristem micro-dissected from soybean treated with 1 short-dayshoot apical meristems from 2 short-day treated soybeansoybean shoot apical meristem subjected to 6 complete short-day cyclessoybean shoot apical meristem, vegetative
2351978.00213, 256, 2562262422447.65091, 200, 2008.21866, 297, 2978.04126, 263, 2638.04047, 263, 263
Graph this experiment

GSE10607

Microdissected shoot apical mersitemnon-apical- meristem (NM) tissue consisted of primary stem, primary roots and mature leavesnon-apical- meristem (NM) tissue consisted of primary stem, primary roots and mature leaves from 10-day-old soybean plantvegetative axillary meristem
178, 189176145160, 216
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GSE10730

2nd trifoliate of iron deficient plant2nd trifoliate of iron sufficient plant
405, 288, 506, 490, 295471, 372, 460, 431, 470, 335
Graph this experiment

GSE12286

Mature pollen grains from soybeanSporophytic tissues from soybean
63, 66, 6367, 70
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GSE12300

150mg cotyledon RNAiOle rep 3150mg nontransgenic soybean seed, rep2cotyledon soybeantransgenic 150mg cotyledon RNAi0le-2transgenic RNAiOle1transgenic RNAioleosin cotyledon bio rep 2 tech rep2
673.11373.763475.276459.597391.31611.164
Graph this experiment

GSE12314

150 mg RNAi cotyledon with suppressed storage proteins150mg RNAiSP- cotyledon biol rep 1 tech rep1150mg RNAiSP- soybean cotyledon150mg cotyledon RNAiSP biol rep 2 tech rep 2150mg cotyledon, wt nontransgenic control150mg nontransgenic soybean cotyledon
247.876262.214252.906228.138320.679241.708
Graph this experiment

GSE17883

root after 0.5h stressroot after 12h stressroot after 1h stressroot after 24h stressroot after 3h stressroot after 6h stressroot at 0h as control
94.67, 101.6850.96, 81.597.05, 68.5999.01, 101.5948.85, 39.1366.06, 64.3872.44, 76.88
Graph this experiment

GSE18423

One centimeter long tap root tip of soybean genotype PI 416937One centimeter long tap root tip of soybean genotype PI 416937 treated with Al
280.265, 202.487, 242.145, 302.43, 275.169, 241.12, 207.957, 200.793, 394.053, 262.772, 187.158229.783, 268.12, 240.457, 282.579, 215.426, 306.701, 346.052, 305.491, 298.328, 291.554, 269.236
Graph this experiment

GSE18517

One centimeter long tap root tip of soybean genotype PI 416937, Al, 12hrOne centimeter long tap root tip of soybean genotype PI 416937, Al, 2hrOne centimeter long tap root tip of soybean genotype PI 416937, Al, 48hrOne centimeter long tap root tip of soybean genotype PI 416937, Al, 72hrOne centimeter long tap root tip of soybean genotype PI 416937, untreated, 12hrOne centimeter long tap root tip of soybean genotype PI 416937, untreated, 2hrOne centimeter long tap root tip of soybean genotype PI 416937, untreated, 48hrOne centimeter long tap root tip of soybean genotype PI 416937, untreated, 72hrOne centimeter long tap root tip of soybean genotype Young, Al, 12hrOne centimeter long tap root tip of soybean genotype Young, Al, 2hrOne centimeter long tap root tip of soybean genotype Young, Al, 48hrOne centimeter long tap root tip of soybean genotype Young, Al, 72hrOne centimeter long tap root tip of soybean genotype Young, untreated, 12hrOne centimeter long tap root tip of soybean genotype Young, untreated, 2hrOne centimeter long tap root tip of soybean genotype Young, untreated, 48hrOne centimeter long tap root tip of soybean genotype Young, untreated, 72hr
230.982, 273.462, 219.523228.836, 267.302296.322, 351.986, 292.251292.209, 285.414, 263.377242.09, 297.152, 255.624281.224, 197.485236.632, 203.486, 199.698397.257, 260.96, 191.509443.548, 412.021, 173.029307.176, 267.758331.136, 359.706, 305.56253.971, 312.29, 318.35212.804, 232.202, 260.452217.1, 223.22277.18, 217.194, 199.574230.351, 262.091, 260.414
Graph this experiment

GSE18518

One centimeter long root tip of soybean genotype PI 416937, Al + Mg, 12hrOne centimeter long root tip of soybean genotype PI 416937, Al + Mg, 72hrOne centimeter long root tip of soybean genotype PI 416937, Al, 12hrOne centimeter long root tip of soybean genotype PI 416937, Al, 72hrOne centimeter long root tip of soybean genotype Young, Al + Mg, 12hrOne centimeter long root tip of soybean genotype Young, Al + Mg, 72hrOne centimeter long root tip of soybean genotype Young, Al, 12hrOne centimeter long root tip of soybean genotype Young, Al, 72hr
237.017, 295.549, 301.987417.273, 339.658, 293.309339.735, 340.397, 333.364492.392, 344.399, 366.529315.908, 301.058, 285.168326.182, 301.048, 309.675242.239, 284.36, 297.9396.109, 479.581, 493.707
Graph this experiment

GSE18822

Soybean leafSoybean noduleSoybean root
611.3, 549.7, 491.8673.9, 663.2, 692.5342.7, 366.2, 304.1
Graph this experiment

GSE18827

entrained soybean seed 24h lightentrained soybean seed 28h lightentrained soybean seed 32h lightentrained soybean seed 36h lightentrained soybean seed 40h lightentrained soybean seed 44h lightentrained soybean seed 48h lightentrained soybean seed 52h lightentrained soybean seed 56h lightentrained soybean seed 60h lightentrained soybean seed 64h lightentrained soybean seed 68h lightentrained soybean seed 72h light
46, 5759, 5050, 4655, 7556, 4451, 5953, 6257, 8662, 6850, 6054, 5756, 6557, 57
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GSE20972

Soybean trifoliates harvested 48 h after foliar spray with LCOSoybean trifoliates harvested 48 h after foliar spray with distilled waterSoybean trifoliates harvested immediately after foliar spray with LCOSoybean trifoliates harvested immediately after foliar spray with distilled water
177, 149, 187288, 393, 277143, 129, 100220, 224, 209
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GSE22158

soybean seed green and fully grownsoybean seed when the bean's length is 5mm
27.7645, 19.348107.814, 92.3285
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GSE22227

Clark 10 day roots, Fe limitedClark 10 day roots, Fe sufficientClark 14 day roots, Fe recoveryClark 14 day roots, Fe sufficientIsoClark 10 day roots, Fe limitedIsoClark 10 day roots, Fe sufficientIsoClark 14 day roots, Fe recoveryIsoClark 14 day roots, Fe sustained
519, 700, 545733, 497, 681484, 668, 704640, 645, 539572, 448, 469497, 414, 559514, 562, 457439, 393, 419
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GSE23128

palisade mesophyll parenchyma cellsparaveinal mesophyll cells
403.463, 440.571, 404.794148.482, 191.937, 401.58
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GSE23129

mature leaf 30 day controlmature leaf day 0 controlmature leaf day 15 controlmature leaf day 15 de-tipped leafletmature leaf day 20 controlmature leaf detip-retip 20 daymature leaf detip-retip 30 daymmature leaf detip-retip 20 day
266.537, 915.85, 1230.44203.093, 245.285, 276.092, 952.552153.473, 453.633, 778.115146.354, 165.705, 255.191478.05, 526.75, 699.949271.045, 273.622196.985, 254.161, 386850.379
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GSE24145

root hair cells, inoculated, 12 hrroot hair cells, inoculated, 18 hrroot hair cells, inoculated, 24 hrroot hair cells, inoculated, 36 hrroot hair cells, inoculated, 48 hrroot hair cells, inoculated, 6 hrroot hair cells, mock, 12 hrroot hair cells, mock, 18 hrroot hair cells, mock, 24 hrroot hair cells, mock, 36 hrroot hair cells, mock, 48 hrroot hair cells, mock, 6 hr
245, 263, 255, 294272, 250, 246, 331211, 282, 213311, 154, 247327, 217, 284286, 190, 201, 257301, 277, 274, 456353, 278, 306, 540212, 272, 187179, 157, 236260, 292, 251290, 278, 283, 327
Graph this experiment

GSE26198

Glycine max leaf, 20% inhibitionGlycine max leaf, 30% inhibitionGlycine max leaf, baselineGlycine max leaf, optimum
1031.04, 1425.83, 1151.88, 903.423997.79, 1380.34, 1038.78, 1135.26769.231, 989.501, 699.486, 700.22768.379, 813.414, 619.759, 634.171
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GSE26208

Black soybean seed coat var. Clark 300 - 400 mg fresh seed weight stage of seed developmentBrown soybean seed coat var. Clark 300 - 400 mg fresh seed weight stage of seed development
369, 352, 392339, 366, 368
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GSE26443

2mm pod with seed5mm soybean seedFully grown green seedPod at Pod elongation stage
234.55, 165.61780.7089, 80.014927.9546, 21.921828.3594, 48.1613
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GSE27894

0.5 mm root tipnon-meristematic tissues
95.6, 84.6, 73.1113.6, 114.5
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GSE29653

GmMPK4-silenced Williams 82 trifoliolate leaves, petioles and stem segmentsWilliams 82 trifoliolate leaves, petioles and stem segments
730.05, 765.2, 821.06, 747.74207.55, 221.05, 126.54, 276.8
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GSE29740

leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 12 hai)leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 144 hai)leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 216 hai)leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 24 hai)leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 288 hai)leaf (pathogen isolates: Hawaii 94-1 (avir) - time: 72 hai)leaf (pathogen isolates: Mock - time: 12 hai)leaf (pathogen isolates: Mock - time: 144 hai)leaf (pathogen isolates: Mock - time: 216 hai)leaf (pathogen isolates: Mock - time: 24 hai)leaf (pathogen isolates: Mock - time: 288 hai)leaf (pathogen isolates: Mock - time: 72 hai)leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 12 hai)leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 144 hai)leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 216 hai)leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 24 hai)leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 288 hai)leaf (pathogen isolates: Taiwan 80-2 (vir) - time: 72 hai)
342.39, 306.36, 392.421162.7, 1881.5, 1238.21984.7, 1747.3, 1658.5609.86, 656.6, 678.081691.7, 1504.5, 1101.81378.7, 563.53, 645.66485.83, 736.54, 458.91362.7, 1898.2, 1979.91712.3, 2009.5, 1837.4557.58, 873.67, 692.241679.2, 1454.4, 1567.2866.86, 858.16, 923.73517.53, 594.61, 543.931010.9, 1750, 1355.21362.9, 1813.6, 1170.5521.39, 539.47, 616.751290.4, 1349.8, 1420.91074.4, 1077.6, 967.67
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GSE29741

leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 12 hai)leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 144 hai)leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 216 hai)leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 24 hai)leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 288 hai)leaf (genotype: PI459025B - pathogen inoculation: Hawaii 94-1 - time: 72 hai)leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 12 hai)leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 144 hai)leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 216 hai)leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 24 hai)leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 288 hai)leaf (genotype: PI459025B - pathogen inoculation: Mock - time: 72 hai)leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 12 hai)leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 144 hai)leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 216 hai)leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 24 hai)leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 288 hai)leaf (genotype: Williams 82 - pathogen inoculation: Hawaii 94-1 - time: 72 hai)leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 12 hai)leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 144 hai)leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 216 hai)leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 24 hai)leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 288 hai)leaf (genotype: Williams 82 - pathogen inoculation: Mock - time: 72 hai)leaf (genotype:Williams 82 - pathogen inoculation: Mock - time: 216 hai)
180.13, 312.67, 422.7921.99, 1044.8, 975.391115.2, 1189.8, 1004.6778.58, 626.61, 577.341442.5, 1219.7, 1185678.19, 1139.4, 925.54640.87, 543.85, 436.27791.52, 1357.5, 1052.71671.9, 894.2, 1087.6676.45, 678.94, 537.591222.9, 1585.5, 1382.8695.16, 840.35, 811.45360.01, 469.2, 407.91837.58, 1346.1, 13511500.4, 1825.3, 1465.51199.8, 1451.8, 832.61095.8, 1576.6, 1214.9831.68, 883.17, 876.53405.75, 597.27, 615.581828.9, 1304.2, 857.711452.2, 1255.6938.17, 837.62, 863.26731.67, 1639.1, 1596.9871.32, 1013.7, 1129.81679
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GSE30112

msh1 RNAi stunted linemsh1 RNAi variegated linewild type
98, 100, 102106, 104, 106136, 110, 119, 94
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GSE33408

HiProt seed 100-200 mgHiProt seed 200-300 mgHiProt seed 25-50 mgHiProt seed 50-100 mgLoProt seed 100-200 mgLoProt seed 200-300 mgLoProt seed 25-50 mgLoProt seed 50-100 mg
197.16, 159.69, 210.43228.78, 224.36, 181.61173.97, 156.18, 198.36154.68, 158.84, 174.26179.76, 178.97, 211.32155.25, 217.47, 182.86261.61, 162.28, 172.23164.17, 145.79, 171.07
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GSE33410

Embrapa48 Leaf 12 HAI ASR infectionEmbrapa48 Leaf 12 HAI mock infectionEmbrapa48 Leaf 120 HAI ASR infectionEmbrapa48 Leaf 120 HAI mock infectionEmbrapa48 Leaf 168 HAI ASR infectionEmbrapa48 Leaf 168 HAI mock infectionEmbrapa48 Leaf 18 HAI ASR infectionEmbrapa48 Leaf 18 HAI mock infectionEmbrapa48 Leaf 24 HAI ASR infectionEmbrapa48 Leaf 24 HAI mock infectionEmbrapa48 Leaf 36 HAI ASR infectionEmbrapa48 Leaf 36 HAI mock infectionEmbrapa48 Leaf 48 HAI ASR infectionEmbrapa48 Leaf 48 HAI mock infectionEmbrapa48 Leaf 6 HAI ASR infectionEmbrapa48 Leaf 6 HAI mock infectionEmbrapa48 Leaf 72 HAI ASR infectionEmbrapa48 Leaf 72 HAI mock infectionEmbrapa48 Leaf 96 HAI ASR infectionEmbrapa48 Leaf 96 HAI mock infectionPI 230970 Leaf 12 HAI ASR infectionPI 230970 Leaf 12 HAI mock infectionPI 230970 Leaf 120 HAI ASR infectionPI 230970 Leaf 120 HAI mock infectionPI 230970 Leaf 168 HAI ASR infectionPI 230970 Leaf 168 HAI mock infectionPI 230970 Leaf 18 HAI ASR infectionPI 230970 Leaf 18 HAI mock infectionPI 230970 Leaf 24 HAI ASR infectionPI 230970 Leaf 24 HAI mock infectionPI 230970 Leaf 36 HAI ASR infectionPI 230970 Leaf 36 HAI mock infectionPI 230970 Leaf 48 HAI ASR infectionPI 230970 Leaf 48 HAI mock infectionPI 230970 Leaf 6 HAI ASR infectionPI 230970 Leaf 6 HAI mock infectionPI 230970 Leaf 72 HAI ASR infectionPI 230970 Leaf 72 HAI mock infectionPI 230970 Leaf 96 HAI ASR infectionPI 230970 Leaf 96 HAI mock infection
857.7, 1185.2, 586785.33, 816.68, 916.11441.88, 407.05, 389.93564.66, 430.17, 408.35646.12, 707.62, 568.31576.52, 362.63, 409.71787.74, 721.81, 647.6821.2, 526.31, 774.37648.8, 537.13, 556.37601.12, 452.36, 725.351070.4, 918.73, 1034.7879.4, 839.66, 774.75445.04, 585.41, 511.85492.1, 838.74, 609.711087.5, 1142, 10481043.6, 979.02, 902.49481.04, 451.58, 372.22553.75, 421.51, 348.71539.86, 541.77, 477.69419.82, 510.88, 410.351017.9, 1084.4, 899.921018.2, 1228.4, 1137.7497.51, 435.52, 440.47631.13, 573.32, 681.75641.14, 574.33, 632.43741.08, 555.59, 616.52652.78, 599.41, 754.25636.6, 592.7, 699.76328.58, 546.6, 434.67345.61, 516.51, 515.07902.43, 1214.2, 1011.3849.68, 1169.8, 1145.3556.73, 489.06, 425.9600.89, 425.5, 455.441376, 1234.4, 1299.71276.6, 1267.1, 437.06372.59, 324.72, 502.3335.96, 432.59, 529.59423.79, 727.86, 404.35608.19, 369.24, 412.89
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GSE35427

LD05-16060 resistant Leaf day1 aphidsLD05-16060 resistant Leaf day1 controlLD05-16060 resistant Leaf day7 aphidsLD05-16060 resistant Leaf day7 controlLD05-16060 resistant leaf day1 controlSD01-76 susceptible Leaf day7 controlSD01-76 susceptible leaf day7 controlSD01-76R susceptible Leaf day1 aphidsSD01-76R susceptible Leaf day1 controlSD01-76R susceptible Leaf day7 aphids
380, 592, 430467, 420497, 379, 342433, 467, 416491294345, 404446, 334, 356342, 269, 247455, 609, 589
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GSE41125

14 day salinity stressed seedlings14 day seedlings mock stressed
980807
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GSE41724

BPMV treated trifoliolate leaves, petioles and stem segmentsBPMV-LRR treated trifoliolate leaves, petioles and stem segments
1276.5, 762.93, 1205.8845.13, 1512.7
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Download query results HERE

Most RNAseq experiments utilized Wm82.a1 gene models whereas all of the Affymetrix SoyChip experiments were mapped to Wm82.a1 gene models. This means that if your query utilized a Wm82.a2 gene model name you probably will receive little to no results. If you did use a Wm82.a2 gene model name (Glyma.01g010000 for example), you will need to convert your Wm82.a2 gene model name to it's Wm82.a1 corresponding name using the SoyBase gene model correspondence tool. Once you have converted your gene model name you can re-run the Expression Explorer page and paste in the Wm82.a1 corresponding gene model ID into the input box on that page.

To convert your gene model ID click the SUBMIT button below






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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