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Click Here to View Full List of GWAS QTL

GWAS Report for WUE 3

Experimental Details

Number of germplasm analyzed	373
Number of loci tested	12347
Platform name	SoySNP50
Platform details	SoySNP50 K iSelect SNP Beadchip

Publication for This Experiment

Genome_wide association study (GWAS) of carbon isotope ratio (_13C) in diverse soybean [Glycine max (L.) Merr.] genotypes
(Dhanapal et al. 2015a)

Theor Appl Genet 2015, 128:7391
10.1007/s00122-014-2413-9

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001313
GO	GO:0010148
PO	PO:0000003
TO	TO:0001017

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	Candidate gene	Chromosome	Linkage Group
WUE 3-g1	Carbon isotope discrimination	ss715581017	Glyma02g13240	Gm02	D1b
WUE 3-g2	Carbon isotope discrimination	ss715582880	Glyma02g40340	Gm02	D1b
WUE 3-g3	Carbon isotope discrimination	ss715582885	Glyma02g40310	Gm02	D1b
WUE 3-g4	Carbon isotope discrimination	ss715582890	Glyma02g40340	Gm02	D1b
WUE 3-g5	Carbon isotope discrimination	ss715582892	Glyma02g40341	Gm02	D1b
WUE 3-g6	Carbon isotope discrimination	ss715582906	Glyma02g40460	Gm02	D1b
WUE 3-g7	Carbon isotope discrimination	ss715582962	Glyma02g40981	Gm02	D1b
WUE 3-g8	Carbon isotope discrimination	ss715586406	Glyma03g04410	Gm03	N
WUE 3-g9.1	Carbon isotope discrimination	ss715588676	Glyma04g39890	Gm04	C1
WUE 3-g9.2	Carbon isotope discrimination	ss715588677	Glyma04g39910	Gm04	C1
WUE 3-g10	Carbon isotope discrimination	ss715588831	Glyma04g41210	Gm04	C1
WUE 3-g11	Carbon isotope discrimination	ss715588846	Glyma04g41420	Gm04	C1
WUE 3-g12	Carbon isotope discrimination	ss715588861	Glyma04g41490	Gm04	C1
WUE 3-g13	Carbon isotope discrimination	ss715588873	Glyma04g41540	Gm04	C1
WUE 3-g14	Carbon isotope discrimination	ss715594602	Glyma06g43040	Gm06	C2
WUE 3-g15	Carbon isotope discrimination	ss715596465	Glyma07g16030	Gm07	M
WUE 3-g16	Carbon isotope discrimination	ss715602516	Glyma08g48050	Gm08	A2
WUE 3-g17	Carbon isotope discrimination	ss715602521	Glyma08g48160	Gm08	A2
WUE 3-g18	Carbon isotope discrimination	ss715603285	Glyma09g02960	Gm09	K
WUE 3-g19	Carbon isotope discrimination	ss715606377	Glyma10g09720	Gm10	O
WUE 3-g20.1	Carbon isotope discrimination	ss715608656	Glyma10g09720	Gm10	O
WUE 3-g20.2	Carbon isotope discrimination	ss715608657	Glyma10g27660	Gm10	O
WUE 3-g21	Carbon isotope discrimination	ss715610958	Glyma11g08590	Gm11	B1
WUE 3-g22	Carbon isotope discrimination	ss715612946	Glyma12g36060	Gm12	H
WUE 3-g23	Carbon isotope discrimination	ss715613850	Glyma13g11700	Gm13	F
WUE 3-g24	Carbon isotope discrimination	ss715614732	Glyma13g24380	Gm13	F
WUE 3-g25	Carbon isotope discrimination	ss715621062	Glyma15g02390	Gm15	E
WUE 3-g26	Carbon isotope discrimination	ss715623203	Glyma15g12330	Gm15	E
WUE 3-g27.1	Carbon isotope discrimination	ss715623206	Glyma15g20631	Gm15	E
WUE 3-g27.2	Carbon isotope discrimination	ss715623207	Glyma15g12370	Gm15	E
WUE 3-g28.1	Carbon isotope discrimination	ss715623209	Glyma15g12380	Gm15	E
WUE 3-g28.2	Carbon isotope discrimination	ss715623210	Glyma15g12400	Gm15	E
WUE 3-g29	Carbon isotope discrimination	ss715627734	Glyma17g36700	Gm17	D2
WUE 3-g30	Carbon isotope discrimination	ss715631698	Glyma18g46050	Gm18	G
WUE 3-g31	Carbon isotope discrimination	ss715632228	Glyma18g41760	Gm18	G
WUE 3-g32	Carbon isotope discrimination	ss715632407	Glyma18g52720	Gm18	G
WUE 3-g33	Carbon isotope discrimination	ss715632431	Glyma18g53170	Gm18	G
WUE 3-g34	Carbon isotope discrimination	ss715634542	Glyma19g29316	Gm19	L
WUE 3-g35	Carbon isotope discrimination	ss715637230	Glyma20g03275	Gm20	I

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Click Here to View Full List of GWAS QTL