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GWAS Report for Soybean looper 1

Experimental Details

Number of germplasm analyzed	288
Number of loci tested	2739
Platform name	SoySNP50K
Platform details	iSelect SNP BeadChip

Publication for This Experiment

Characterization of Insect Resistance Loci in the USDA Soybean Germplasm Collection Using Genome-Wide Association Studies
(Chang et al. 2017a)

Chang H-X and Hartman GL Front. Plant Sci. 2017, 8:670
10.3389/fpls.2017.00670

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001543
GO	GO:0009625
TO	TO:0000961

Other traits reported in this paper

• Mexican bean beetle 1
• Potato leafhopper 1
• Pubescence density 1
• Soybean aphid 1
• Velvetbean caterpillar 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	R2	Chromosome	Linkage Group
Soybean looper 1-g1	ss715592245	0.244	Gm05	A1

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