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GWAS Report for Shoot length 1

Experimental Details

Number of germplasm analyzed	184
Number of loci tested	6000
Platform name	Illumina beadchip
Platform details	Illumina Infinium Bead Chip

Publication for This Experiment

Mapping Quantitative Trait Loci for Soybean Seedling Shoot and Root Architecture Traits in an Interspecific Genetic Population
(Prince et al. 2020)

Prince et al. Front. Plant Sci. 2020, 11:1284
/10.3389/fpls.2020.01284

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001369
PO	PO:0025291
TO	TO:0006065

Other traits reported in this paper

• Plant height 8
• Tap root length 1
• Root length 1
• Root surface area 1
• Root volume 1
• Root length dist 1
• Root surface area dist 1
• Root thickness dist 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	R2	LOD	Chromosome	Linkage Group
Shoot length 1-g1	SL_3	17.1	8.1	Gm03	N
Shoot length 1-g2	SL_7	8.1	4.1	Gm07	M

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Click Here to View Full List of GWAS QTL