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GWAS Report for Seed width 1

Experimental Details

Number of germplasm analyzed	327
Number of loci tested	3255
Platform name	SLAF
Platform details	SLAF markers

Publication for This Experiment

High-Resolution Mapping in Two RIL Populations Refines Major QTL Hotspot Regions for Seed Size and Shape in Soybean (Glycine max L.)
(Hina et al. 2020)

Int.J. Mol. Sci. (2020), 21:1040
/10.3390/ijms21031040

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001597
PO	PO:0009010
TO	TO:0000149

Other traits reported in this paper

• Seed length 1
• Seed height 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	R2	LOD	Chromosome	Linkage Group
Seed width 1-g1	qSW-1-1-ZY	8.63	6.35	Gm01	D1a
Fractional QTL not presented. See paper for details
Seed width 1-g2	qSW-2-1-K3N	17.32	5.24	Gm02	D1b
Fractional QTL not presented. See paper for details
Seed width 1-g3	qSW-5-1-K3N	11.26	3.64	Gm05	A1
Fractional QTL not presented. See paper for details
Seed width 1-g4	qSW-8-1-K3N	12.61	4.17	Gm08	A2
Fractional QTL not presented. See paper for details
Seed width 1-g5	qSW-9-1-K3N	17.24	5.22	Gm09	K
Fractional QTL not presented. See paper for details
Seed width 1-g6	qSW-9-2-ZY	5.39	3.77	Gm09	K
Fractional QTL not presented. See paper for details
Seed width 1-g7	qSW-10-1-K3N	12.85	3.83	Gm10	O
Fractional QTL not presented. See paper for details
Seed width 1-g8	qSW-13-2-ZY	5.19	3.57	Gm13	F
Fractional QTL not presented. See paper for details
Seed width 1-g9	qSW-17-1-ZY	10.92	6.22	Gm17	D2
Fractional QTL not presented. See paper for details
Seed width 1-g10	qSW-17-2-ZY	10.33	5.76	Gm17	D2
Fractional QTL not presented. See paper for details

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Click Here to View Full List of GWAS QTL