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GWAS Report for Seed weight 15

Experimental Details

Number of germplasm analyzed	112
Number of loci tested	587
Platform name	GBS

Publication for This Experiment

Identification of quantitative trait loci underlying soybean (Glycine max) 100-seed weight under different levels of phosphorus fertilizer application.
(Wu et al. 2020)

Wu et al. (2020) Plant Breeding 00:1-10
10.1111/pbr.12850

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001629
PO	PO:0009010
TO	TO:0000181

Comments

Only QTL present in multiple environments presented, see paper for details, both SSR and SNP marker used.

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	LOD	Chromosome	Linkage Group
Seed weight 15-g1	qSW1-1	Satt603	3.1	Gm01	D1a
Environment 1 value used
Seed weight 15-g2	qSW2-2	Satt157	4.75	Gm02	D1b
Environment 1 value used
Seed weight 15-g3	qSW2-3	SNP_13	2.74	Gm02	D1b
Environment 1 value used
Seed weight 15-g4	qSW10-1	Satt592	3.01	Gm10	O
Environment 4 value used
Seed weight 15-g5	qSW13-1	SNP_89	2.67	Gm13	F
Environment 4 value used
Seed weight 15-g6	qSW15-1	Sat_136	3.14	Gm15	E
Environment 3 value used
Seed weight 15-g7	qSW17-1	Sat_031	2.77	Gm17	D2
Environment 2 value used
Seed weight 15-g8	qSW19-1	Satt523	3.14	Gm19	L
Environment 1 value used
Seed weight 15-g9	qSW20-1	Sat_418	2.63	Gm20	I
Environment 1 value used

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