---

Click Here to View Full List of GWAS QTL

GWAS Report for Seed weight 13

Experimental Details

Number of germplasm analyzed	367
Number of loci tested	355,595
Platform name	NJAU 355_K SoySNP
Platform details	Affymetrix Axiom Genome-Wide BOS 1 Assay

Publication for This Experiment

Development and application of a novel genome-wide SNP array reveals domestication history in soybean.
(Wang et al. 2016a)

Sci Rep. 2016, 6:20728
10.1038/srep20728.

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001629
PO	PO:0009010
TO	TO:0000181

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	p-value	Candidate gene	Chromosome	Linkage Group
Seed weight 13-g1	Gm11:2338406	2.479E-06	Glyma11g03360, Glyma11g03430	Gm11	B1
Seed weight 13-g2	Gm20:27308646	2.999E-06		Gm20	I
Seed weight 13-g3	ss715610675	4.053E-07	Glyma11g05760	Gm11	B1
Seed weight 13-g4	Gm11:12287129	2.018E-06		scaffold_21	B1
Seed weight 13-g5	Gm11:14211486	1.129E-06		scaffold_21	B1
Seed weight 13-g6	Gm11:34177488	4.024E-07		Gm11	B1
Seed weight 13-g7	Gm13:10352822	3.055E-06		Gm13	F
Seed weight 13-g8	Gm13:28066134	2.819E-06		Gm13	F
Seed weight 13-g9	ss715615831	1.711E-06		Gm13	F
Seed weight 13-g10	Gm18:3968571	2.864E-06	Glyma18g05240	Gm18	G
Seed weight 13-g11	ss715631414	7.827E-08	Glyma18g43500	Gm18	G

---

Click Here to View Full List of GWAS QTL