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GWAS Report for Seed Tyr 2

Experimental Details

Number of germplasm analyzed	345
Number of loci tested	1866
Platform name	SSR and SoySNP6 K
Platform details	SoySNP6 K Illumina Infinium BeadChip genotyping array

Publication for This Experiment

Identification and verification of pleiotropic QTL controlling multiple amino acid contents in soybean seed
(Li et al. 2018c)

Euphytica 2018, 214: 93
10.1007/s10681-018-2170-y

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001772
CHEBI	CHEBI:17895
GO	GO:0006571
PO	PO:0009010

Other traits reported in this paper

• Seed Gly 2
• Seed Ala 2
• Seed Ile 2
• Seed Leu 2
• Seed Val 2
• Seed Asp 2
• Seed Glu 2
• Seed Lys 2
• Seed Arg 2
• Seed Ser 2
• Seed Thr 2
• Seed Met 2
• Seed Phe 2
• Seed His 2
• Seed Pro 2

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Associated locus	LOD	Chromosome	Linkage Group
Seed Tyr 2-g1	ss715625974	10.32	Gm17	D2
Seed Tyr 2-g2	ss715603840	3.12	Gm09	K
Seed Tyr 2-g3	ss715628342	3.48	Gm17	D2
Seed Tyr 2-g4	ss715594314	4.03	Gm06	C2

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Click Here to View Full List of GWAS QTL