Click Here to View Full List of GWAS QTL
GWAS Report for Raffinose 1
Experimental Details
Number of germplasm analyzed | 140 |
---|
Number of loci tested | 3038 |
---|
Platform name | Illumina SoyNAM BeadChip SNP array |
---|
Platform details | 4K SoyNAM SNPs from the Illumina chip used. |
---|
Publication for This Experiment
Mapping QTL controlling soybean seed sucrose and oligosaccharides in a single family of soybean nested association mapping (SoyNAM) population
(Salari et al. 2021)
Salari et al. Plant Breeding. 2021;140:110�122
10.1111/pbr.12883
Controlled vocabulary terms associated with the QTL Family
Other traits reported in this paper
Comments
SoyNAM families were assayed. Composite Interval Mapping using QTL Cartographer v2.5.
GWAS QTL
The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.
GWAS QTL name | Original name | Associated locus | LOD | Candidate gene | Chromosome | Linkage Group |
Raffinose 1-g1 | Raffinose 1-1 | Gm06_17204660_T_G | 3.4 | Glyma.06g194200 | Gm06 | C2 |
Click Here to View Full List of GWAS QTL