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GWAS Report for R8 full maturity 2

Experimental Details

Number of germplasm analyzed	309
Number of loci tested	31,045
Platform name	SoySNP50K
Platform details	Ilumina BeadChip

Publication for This Experiment

Genome-wide association study for flowering time, maturity dates and plant height in early maturing soybean (Glycine max) germplasm
(Zhang et al. 2015b)

BMC Genomics (2015) 16:217
10.1186/s12864-015-1441-4

Supplemental data for the GWAS QTL
trait-associated loci, MAF, candidate genes, near-by QTL

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001646
GO	GO:0010154
PO	PO:0009010
TO	TO:0002661

Other traits reported in this paper

• First flower 2
• Reproductive period 2
• Plant height 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	p-value	Candidate gene	Chromosome	Linkage Group
R8 full maturity 2-g1	DTM	ss715608733	5.20E-06	Glyma11g14150	Gm11	B1
R8 full maturity 2-g2	DTM	ss715623784	2.50E-06	Glyma16g02840	Gm16	J
R8 full maturity 2-g3	DTM	ss715623939	4.30E-06		Gm16	J
R8 full maturity 2-g4	DTM	ss715624268	3.80E-06	Glyma16g03580	Gm16	J
R8 full maturity 2-g5	DTM	ss715635425	7.60E-06	Dt1	Gm19	L
R8 full maturity 2-g6	DTM	ss715635754	1.10E-05		Gm19	L

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