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GWAS Report for Phytopthora sansomeana 1

Experimental Details

Number of germplasm analyzed	228
Number of loci tested	978
Platform name	BARCSoySNP6K
Platform details	Illumina Infinium BARCSoySNP6K iSelect BeadChip

Publication for This Experiment

Molecular mapping of quantitative disease resistance loci for soybean partial resistance to Phytophthora sansomeana
(Lin et al. 2021)

TAG (2021), 134:1977-1987
10.1007/s00122-021-03799-x

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0002311

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	LOD	Chromosome	Linkage Group
Phytopthora sansomeana 1-g1	qPsan5.1	3.67	Gm05	A1
Disease index reported as a range, Seedling emergence and relative root weight also mapped here
Phytopthora sansomeana 1-g2	qPsan 16.1	3.18	Gm16	J
Disease index reported as a range, Relative seedling emergence also mapped here

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Click Here to View Full List of GWAS QTL