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GWAS Report for Leaflet chlorophyll 3

Experimental Details

Number of germplasm analyzed	433
Number of loci tested	6159
Platform name	GBS
Platform details	Analysis of RIL population using SNPs

Publication for This Experiment

High-density QTL mapping of leaf-related traits and chlorophyll content in three soybean RIL populations
(Yu et al. 2020)

Yu et al. (2020), BMC Plant Biology 20:470
https://doi.org/10.1186/s12870-020-02684-x

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001859
PO	PO:0020049
TO	TO:0000495

Other traits reported in this paper

• Seed weight 16
• Leaflet area 2
• Leaflet length to width ratio 1
• Leaflet width 2
• Leaflet length 2

Comments

Only QTL present in all years and locations presented, See paper for details

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	LOD	Chromosome	Linkage Group
Leaflet chlorophyll 3-g1	q4-1, CC	3.69	Gm04	C1
Multiple trait QTL colocated at the same locus, Only range given, See paper for details
Leaflet chlorophyll 3-g2	q4-2, CC	3.28	Gm04	C1
Multiple trait QTL colocated at the same locus, Only range given, See paper for details
Leaflet chlorophyll 3-g3	q13, CC	3.23	Gm13	F
Multiple trait QTL colocated at the same locus, Only range given, See paper for details
Leaflet chlorophyll 3-g4	q20, CC	32.59	Gm20	I
Multiple trait QTL colocated at the same locus, Only range given, See paper for details

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