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GWAS Report for Flower color 5

Experimental Details

Number of germplasm analyzed	302
Number of loci tested	1,537
Platform name	G. soja genome-specific CDS and CNVRs
Platform details	sequencing library and individual CNV fragments

Publication for This Experiment

Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean.
(Zhou et al. 2015a)

Nat Biotechnol. 2015, 33(4):408-14
10.1038/nbt.3096

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0001352
PO	PO:0009046
TO	TO:0000537

Other traits reported in this paper

• Stem determination 1
• Seed weight 12
• Seed oil 2
• Seed coat color 4
• Pubescence form 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	p-value	Chromosome	Linkage Group
Flower color 5-g1	Warning: Undefined array key "other_name" in /var/www/html/GWAS/index.php on line 307	ss715616656	4.57E32	Gm13	F
Flower color 5-g2	Gm13:3644652	Gm13:18224539	4.89E29	Gm13	F

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