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GWAS Report for Canopy temperature 2

Experimental Details

Number of germplasm analyzed	168
Number of loci tested	548
Platform name	GBS
Platform details	genotype-by-sequencing

Publication for This Experiment

Mapping and confirmation of quantitative trait loci (QTLs) associated with carbon isotope ratio (13C) in soybean.
(Bazzer et al. 2022)

Bazzer et al., Crop Science 2020; 60:2479–2499
10.1002/csc2.20240

Controlled vocabulary terms associated with the QTL Family

SoyBase	SOY:0002309

Other traits reported in this paper

• Canopy temperature 1

GWAS QTL

The GWAS QTL can be shown in either the SoyBase CMap Genetic Map Viewer (where it can be compared to the other GWAS and biparental QTL) or in the SoyBase GBrowse Genome Viewer (where it can be compared to the genes in that chromosomal region). When a candidate gene has been identified clicking on the gene name ('Glyma') opens the SoyBase Gene Report page for that gene.

GWAS QTL name	Original name	Associated locus	R2	Chromosome	Linkage Group
Canopy temperature 2-g1	Gm02-PT18-MIM	ss107919808	12.3	Gm02	D1b
Canopy temperature 2-g2	Gm10-PT19-MIM	ss107921662	8.5	Gm10	O
Canopy temperature 2-g3	Gm11-PT19-MIM	ss107919087	11.5	Gm11	B1
Canopy temperature 2-g4	Gm16-PT19-MIM	ss107927055	4.9	Gm16	J
Canopy temperature 2-g5	Gm03-RH18-MIM	ss107929820	6.5	Gm03	N
Canopy temperature 2-g6	Gm11-RH19-MIM	ss107919087	10.8	Gm11	B1
Canopy temperature 2-g7	Gm13-RH18-MIM	ss107912665	4.6	Gm13	F

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