Genes Covered By A Chromosome Alteration FN350040.02.01.M4.4

Gene Name

Gene Annotation

Glyma05g26870

2OG-Fe(II) oxygenase superfamily PFAM PF03171
FE(II)/ ASCORBATE OXIDASE SUPERFAMILY Panther PTHR10209
Iron/ascorbate family oxidoreductases KOG KOG0143
oxidoreductase activity PFAM PF03171
FE(II)/ ASCORBATE OXIDASE SUPERFAMILY Panther PTHR10209
Iron/ascorbate family oxidoreductases KOG KOG0143
senescence-related gene 1 AT AT1G17020

Glyma05g26880

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Tetratricopeptide repeat (TPR)-like superfamily protein AT AT4G33170

Glyma05g26890

EF hand PFAM PF00036
CALMODULIN Panther PTHR10891
EF hand PFAM PF00036
CALMODULIN Panther PTHR10891
Calcium-binding EF-hand family protein AT AT3G03430

Glyma05g26900

Endonuclease/Exonuclease/phosphatase family PFAM PF03372
INOSITOL 5-PHOSPHATASE Panther PTHR11200
Inositol polyphosphate 5-phosphatase and related proteins KOG KOG0565
Endonuclease/Exonuclease/phosphatase family PFAM PF03372
INOSITOL 5-PHOSPHATASE Panther PTHR11200
Inositol polyphosphate 5-phosphatase and related proteins KOG KOG0565
DNAse I-like superfamily protein AT AT2G01900

Glyma05g26920

ACID PHOSPHATASE-RELATED Panther PTHR10161
hydrolase activity PFAM PF00149
ACID PHOSPHATASE-RELATED Panther PTHR10161
Purple (tartrate-resistant) acid phosphatase KOG KOG2679
purple acid phosphatase 8 AT AT2G01890

Glyma05g26930

Calcineurin-like phosphoesterase PFAM PF00149
ACID PHOSPHATASE-RELATED Panther PTHR10161
Purple (tartrate-resistant) acid phosphatase KOG KOG2679
Activity=phosphatase; Pathway=NAD/NADH phosphorylation and dephosphorylation SoyCyc PWY-5083
Activity=phosphatase; Pathway=thiamin diphosphate biosynthesis IV (eukaryotes) SoyCyc PWY-6908
Activity=phosphatase; Pathway=superpathway of thiamin diphosphate biosynthesis III (eukaryotes) SoyCyc THISYNARA-PWY
Activity=phosphatase; Pathway=phosphate acquisition SoyCyc PWY-6348
hydrolase activity PFAM PF00149
ACID PHOSPHATASE-RELATED Panther PTHR10161
Purple (tartrate-resistant) acid phosphatase KOG KOG2679
purple acid phosphatase 8 AT AT2G01890
purple acid phosphatase 3 AT AT1G14700

Glyma05g26940

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein AT AT1G68080

Glyma05g26950

hydroxyproline-rich glycoprotein family protein AT AT1G14710

Glyma05g26960

Xyloglucan endo-transglycosylase (XET) C-terminus PFAM PF06955
Xyloglucan:xyloglucosyl transferase. EC 2.4.1.207
xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] KO K08235
hydrolase activity, hydrolyzing O-glycosyl compounds PFAM PF00722
cellular glucan metabolic process PFAM PF06955
xyloglucan:xyloglucosyl transferase EC 2.4.1.207
xyloglucan:xyloglucosyl transferase [EC:2.4.1.207] KO K08235
xyloglucan endotransglucosylase/hydrolase 28 AT AT1G14720

Glyma05g26970

Eukaryotic cytochrome b561 PFAM PF03188
CYTOCHROME B561 Panther PTHR10106
Cytochrome b KOG KOG1619
integral to membrane PFAM PF03188
CYTOCHROME B561 Panther PTHR10106
Cytochrome b KOG KOG1619
Cytochrome b561/ferric reductase transmembrane protein family AT AT1G14730

Glyma05g26980

Protein of unknown function (DUF1423) PFAM PF07227
FAMILY NOT NAMED Panther PTHR21736
Protein of unknown function (DUF1423) PFAM PF07227
VERNALIZATION-INSENSITIVE PROTEIN 3 Panther PTHR21736
Protein of unknown function (DUF1423) AT AT1G14740

Glyma05g26990

Zinc finger, C2H2 type PFAM PF00096
zinc finger protein 4 AT AT1G66140

Glyma05g27010

SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Protein kinase family protein AT AT5G38210

Glyma05g27020

Protein of unknown function (DUF789) PFAM PF05623
Protein of unknown function (DUF789) PFAM PF05623
Protein of unknown function (DUF789) AT AT1G15030

Glyma05g27030

Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PFAM PF01188
ENOLASE SUPERFAMILY, MANDELATE RACEMASE Panther PTHR13794
Mandelate racemase / muconate lactonizing enzyme, N-terminal domain PFAM PF02746
Mandelate racemase / muconate lactonizing enzyme, C-terminal domain PFAM PF01188
catalytic activity Panther PTHR13794
cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene AT AT3G18270

Glyma05g27040

Mitochondrial ribosomal subunit protein PFAM PF10213
Mitochondrial ribosomal protein S28 KOG KOG3933
Mitochondrial ribosomal subunit protein PFAM PF10213
Ribosomal protein S24/S35, mitochondrial AT AT3G18240

Glyma05g27050

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
protein phosphorylation PFAM PF07714
protein phosphorylation PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Protein kinase superfamily protein AT AT1G70740

Glyma05g27060

Protein of unknown function, DUF593 PFAM PF04576
Protein of unknown function, DUF593 PFAM PF04576
Protein of unknown function, DUF593 AT AT1G70750

Glyma05g27070

ENTH domain PFAM PF01417
CLATHRIN ASSEMBLY PROTEIN Panther PTHR22951
Clathrin assembly protein AP180 and related proteins, contain ENTH domain KOG KOG0251
phospholipid binding PFAM PF07651
ENTH domain PFAM PF01417
CLATHRIN ASSEMBLY PROTEIN Panther PTHR22951
Clathrin assembly protein AP180 and related proteins, contain ENTH domain KOG KOG0251
ENTH/ANTH/VHS superfamily protein AT AT2G01600

Glyma05g27081

oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor PFAM PF10716
inorganic carbon transport protein-related AT AT1G70760

Glyma05g27090

Uncharacterized conserved protein KOG KOG4467
FAMILY NOT NAMED Panther PTHR13448
Uncharacterised conserved protein (DUF2359) PFAM PF10151
UNCHARACTERIZED Panther PTHR13448
Uncharacterized conserved protein KOG KOG4467
Protein of unknown function DUF2359, transmembrane AT AT1G23170

Glyma05g27105

sequence-specific DNA binding PFAM PF00319
MADS BOX PROTEIN Panther PTHR11945
MADS-box transcription factor family protein AT AT5G55690

Glyma05g27120

Glyma05g27130

Glyma05g27145

acid-amino acid ligase activity PFAM PF00179
UBIQUITIN-CONJUGATING ENZYME E2 Panther PTHR11621
Ubiquitin-protein ligase KOG KOG0417
Ubiquitin-conjugating enzyme family protein AT AT1G53025

Glyma05g27160

Protein of unknown function (DUF3317) PFAM PF11779
Protein of unknown function (DUF3317) AT AT1G06515

Glyma05g27190

GRAS family transcription factor PFAM PF03514
Transcriptional regulator DELLA protein N terminal PFAM PF12041
GRAS family transcription factor PFAM PF03514
DELLA protein KO K14494
GRAS family transcription factor family protein AT AT2G01570

Glyma05g27200

AT AT1G70780

Glyma05g27220

VQ motif PFAM PF05678
VQ motif PFAM PF05678

Glyma05g27240

Cullin protein neddylation domain PFAM PF10557
CULLIN Panther PTHR11932
Cullins KOG KOG2167
cullin 4 KO K10609
DNA repair GO GO:0006281
short-day photoperiodism, flowering GO GO:0048575
sugar mediated signaling pathway GO GO:0010182
cotyledon development GO GO:0048825
fruit development GO GO:0010154
shoot development GO GO:0048367
hormone-mediated signaling pathway GO GO:0009755
negative regulation of photomorphogenesis GO GO:0010100
flower development GO GO:0009908
nucleus GO GO:0005634
protein polyubiquitination GO GO:0000209
ubiquitin ligase complex GO GO:0000151
leaf development GO GO:0048366
CUL4 RING ubiquitin ligase complex GO GO:0080008
photomorphogenesis GO GO:0009640
protein binding GO GO:0005515
cell cycle GO GO:0007049
ubiquitin-dependent protein catabolic process PFAM PF00888
ubiquitin-dependent protein catabolic process PFAM PF10557
CULLIN Panther PTHR11932
Cullins KOG KOG2167
cullin 4 KO K10609
cullin4 AT AT5G46210

Glyma05g27250

Retinal pigment epithelial membrane protein PFAM PF03055
CARTENOID OXYGENASE Panther PTHR10543
Beta, beta-carotene 15,15'-dioxygenase and related enzymes KOG KOG1285
9-cis-epoxycarotenoid dioxygenase EC 1.13.11.51
9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] KO K09840
Activity=9-cis-epoxycarotenoid dioxygenase; Pathway=abscisic acid biosynthesis SoyCyc PWY-695
Activity=9-cis-epoxycarotenoid dioxygenase; Pathway=abscisic acid biosynthesis SoyCyc PWY-695
Retinal pigment epithelial membrane protein PFAM PF03055
CARTENOID OXYGENASE Panther PTHR10543
Beta, beta-carotene 15,15'-dioxygenase and related enzymes KOG KOG1285
9-cis-epoxycarotenoid dioxygenase EC 1.13.11.51
9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51] KO K09840
nine-cis-epoxycarotenoid dioxygenase 5 AT AT1G30100

Glyma05g27260

Transketolase, C-terminal domain PFAM PF02780
DEHYDROGENASE RELATED Panther PTHR11624
Pyruvate dehydrogenase E1, beta subunit KOG KOG0524
Pyruvate dehydrogenase (lipoamide). EC 1.2.4.1
E1.2.4.1B, pdhB; pyruvate dehydrogenase E1 component, beta subunit [EC:1.2.4.1 ] [COG:COG0022 ] [GO:0004739 ] KO K00162
zinc ion binding GO GO:0008270
pollen tube development GO GO:0048868
transketolase activity GO GO:0004802
plastid pyruvate dehydrogenase complex GO GO:0010240
fatty acid biosynthetic process GO GO:0006633
chloroplast envelope GO GO:0009941
chloroplast GO GO:0009507
pyruvate dehydrogenase (acetyl-transferring) activity GO GO:0004739
Transketolase, pyrimidine binding domain PFAM PF02779
catalytic activity PFAM PF02780
DEHYDROGENASE RELATED Panther PTHR11624
Pyruvate dehydrogenase E1, beta subunit KOG KOG0524
pyruvate dehydrogenase (acetyl-transferring) EC 1.2.4.1
pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] KO K00162
pyruvate dehydrogenase E1 beta AT AT1G30120

Glyma05g27270

FAMILY NOT NAMED Panther PTHR12770
Protein of unknown function, DUF647 PFAM PF04884
FAMILY NOT NAMED Panther PTHR12770
Protein of unknown function, DUF647 AT AT2G31190

Glyma05g27280

Divergent CCT motif PFAM PF09425
tify domain PFAM PF06200
protein binding PFAM PF09425
jasmonate-zim-domain protein 8 AT AT1G30135

Glyma05g27290

FMN-dependent dehydrogenase PFAM PF01070
(S)-2-HYDROXY-ACID OXIDASE-RELATED Panther PTHR10578
Glycolate oxidase KOG KOG0538
Activity=glycolate oxidase; Pathway=photorespiration SoyCyc PWY-181
Activity=Glycolate oxidase; Pathway=Glycolate and glyoxylate degradation II SoyCyc GLYOXDEG-PWY
Activity=Glycolate oxidase; Pathway=photorespiration SoyCyc PWY-181
oxidoreductase activity PFAM PF01070
nitronate monooxygenase activity PFAM PF03060
catalytic activity PFAM PF00478
glutamate synthase activity PFAM PF01645
(S)-2-HYDROXY-ACID OXIDASE-RELATED Panther PTHR10578
Glycolate oxidase KOG KOG0538
Aldolase-type TIM barrel family protein AT AT3G14420

Glyma05g27300

FMN-dependent dehydrogenase PFAM PF01070
(S)-2-HYDROXY-ACID OXIDASE-RELATED Panther PTHR10578
Glycolate oxidase KOG KOG0538
Activity=glycolate oxidase; Pathway=photorespiration SoyCyc PWY-181
vacuole GO GO:0005773
FMN binding GO GO:0010181
oxidoreductase activity GO GO:0016491
catalytic activity GO GO:0003824
chloroplast stroma GO GO:0009570
peroxisome GO GO:0005777
apoplast GO GO:0048046
membrane GO GO:0016020
chloroplast GO GO:0009507
cytosolic ribosome GO GO:0022626
oxidation-reduction process GO GO:0055114
nucleus GO GO:0005634
glycolate oxidase activity GO GO:0008891
metabolic process GO GO:0008152
Activity=Glycolate oxidase; Pathway=Glycolate and glyoxylate degradation II SoyCyc GLYOXDEG-PWY
Activity=Glycolate oxidase; Pathway=photorespiration SoyCyc PWY-181
oxidoreductase activity PFAM PF01070
nitronate monooxygenase activity PFAM PF03060
(S)-2-HYDROXY-ACID OXIDASE-RELATED Panther PTHR10578
Glycolate oxidase KOG KOG0538
Aldolase-type TIM barrel family protein AT AT4G18360

Glyma05g27311

Tetratricopeptide repeat (TPR)-like superfamily protein AT AT5G16860

Glyma05g27320

AT AT5G19875

Glyma05g27331

protein binding PFAM PF00560
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
receptor like protein 29 AT AT2G42800

Glyma05g27340

KH domain PFAM PF00013
RNA-BINDING PROTEIN RELATED Panther PTHR10288
PolyC-binding proteins alphaCP-1 and related KH domain proteins KOG KOG2190
RNA binding PFAM PF00013
RNA binding PFAM PF07650
RNA-BINDING PROTEIN RELATED Panther PTHR10288
PolyC-binding proteins alphaCP-1 and related KH domain proteins KOG KOG2190
RNA-binding KH domain-containing protein AT AT5G46190

Glyma05g27360

Aminotransferase class-III PFAM PF00202
AMINOTRANSFERASE CLASS III Panther PTHR11986
Ornithine aminotransferase KOG KOG1402
transaminase activity PFAM PF00202
transaminase activity Panther PTHR11986
Ornithine aminotransferase KOG KOG1402
ornithine aminotransferase EC 2.6.1.13
ornithine--oxo-acid transaminase [EC:2.6.1.13] KO K00819
ornithine-delta-aminotransferase AT AT5G46180

Glyma05g27367

TCP family transcription factor PFAM PF03634
TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 AT AT4G18390

Glyma05g27374

F-box associated PFAM PF07734
F-box family protein AT AT3G06240

Glyma05g27382

Glyma05g27390

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Tetratricopeptide repeat (TPR)-like superfamily protein AT AT2G37230

Glyma05g27400

Major Facilitator Superfamily PFAM PF07690
SUGAR TRANSPORTER Panther PTHR11600
Permease of the major facilitator superfamily KOG KOG0569
transmembrane transporter activity PFAM PF00083
Major Facilitator Superfamily PFAM PF07690
PFAM PF06609
SUGAR TRANSPORTER Panther PTHR11600
Permease of the major facilitator superfamily KOG KOG0569
MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13 KO K08150
inositol transporter 2 AT AT1G30220

Glyma05g27410

Major Facilitator Superfamily PFAM PF07690
SUGAR TRANSPORTER Panther PTHR11600
Permease of the major facilitator superfamily KOG KOG0569
transmembrane transporter activity PFAM PF00083
Major Facilitator Superfamily PFAM PF07690
PFAM PF06609
SUGAR TRANSPORTER Panther PTHR11600
Permease of the major facilitator superfamily KOG KOG0569
MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13 KO K08150
inositol transporter 2 AT AT1G30220

Glyma05g27415

AT AT4G18395

Glyma05g27420

Glutaredoxin PFAM PF00462
GLUTAREDOXIN Panther PTHR10168
Glutaredoxin and related proteins KOG KOG1752
protein disulfide oxidoreductase activity PFAM PF00462
GLUTAREDOXIN Panther PTHR10168
Glutaredoxin and related proteins KOG KOG1752
Glutaredoxin family protein AT AT3G21460

Glyma05g27431

endoplasmic reticulum membrane PFAM PF03155
endoplasmic reticulum membrane Panther PTHR12413
ALG6, ALG8 glycosyltransferase family AT AT2G44660

Glyma05g27440

Glyma05g27450

AT AT1G30260

Glyma05g27480

C3HC zinc finger-like PFAM PF07967
Uncharacterized conserved protein KOG KOG4765
nucleus PFAM PF07967
Uncharacterized conserved protein KOG KOG4765
IAP-like protein 1 AT AT1G17210

Glyma05g27500

AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED Panther PTHR23172
Auxilin-like protein and related proteins containing DnaJ domain KOG KOG0431
heat shock protein binding PFAM PF00226
AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED Panther PTHR23172
Auxilin-like protein and related proteins containing DnaJ domain KOG KOG0431
Chaperone DnaJ-domain superfamily protein AT AT1G30280

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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