Genes Covered By A Chromosome Alteration FN302169.01.01.M4.2

Gene Name

Gene Annotation

Glyma04g18235

5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity PFAM PF01717
Cobalamin-independent synthase family protein AT AT5G17920

Glyma04g18410

PPPDE putative peptidase domain PFAM PF05903
UNCHARACTERIZED Panther PTHR12378
Uncharacterized conserved protein KOG KOG0324
PPPDE putative peptidase domain PFAM PF05903
UNCHARACTERIZED Panther PTHR12378
Uncharacterized conserved protein KOG KOG0324
PPPDE putative thiol peptidase family protein AT AT4G17486

Glyma04g18431

Myb-like DNA-binding domain PFAM PF00249
TELOMERIC REPEAT BINDING PROTEIN Panther PTHR21717:SF7
myb-like HTH transcriptional regulator family protein AT AT5G58340

Glyma04g18450

MO25-RELATED Panther PTHR10182
Mo25-like PFAM PF08569
MO25-RELATED Panther PTHR10182
Mo25 family protein AT AT5G47540

Glyma04g18520

Peroxisomal membrane protein (Pex16) PFAM PF08610
UNCHARACTERIZED Panther PTHR13299
shrunken seed protein (SSE1) AT AT2G45690

Glyma04g18590

XH domain PFAM PF03469
RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED Panther PTHR21596
XH/XS domain-containing protein AT AT3G48670

Glyma04g18661

Glyma04g18730

Protein kinase domain PFAM PF00069
SERINE/THREONINE PROTEIN KINASE Panther PTHR22985
Putative serine/threonine protein kinase KOG KOG0610
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE/THREONINE PROTEIN KINASE Panther PTHR22985
Putative serine/threonine protein kinase KOG KOG0610
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT AT2G26700

Glyma04g18940

Choline/ethanolamine kinase PFAM PF01633
CHOLINE/ETHANOALAMINE KINASE RELATED Panther PTHR22603
Ethanolamine kinase KOG KOG4720
phosphotransferase activity, alcohol group as acceptor PFAM PF01633
Phosphotransferase enzyme family PFAM PF01636
CHOLINE/ETHANOALAMINE KINASE RELATED Panther PTHR22603
Ethanolamine kinase KOG KOG4720
Protein kinase superfamily protein AT AT2G26830

Glyma04g18950

Domain of unknown function (DUF1977) PFAM PF09320
DNAJ/HSP40 Panther PTHR11821
Molecular chaperone (DnaJ superfamily) KOG KOG0714
heat shock protein binding PFAM PF00226
Domain of unknown function (DUF1977) PFAM PF09320
DNAJ/HSP40 Panther PTHR11821
Molecular chaperone (DnaJ superfamily) KOG KOG0714
Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) AT AT3G57340

Glyma04g18960

Core-2/I-Branching enzyme PFAM PF02485
GLYCOSYLTRANSFERASE 14 FAMILY MEMBER Panther PTHR19297
Branching enzyme KOG KOG0799
membrane PFAM PF02485
GLYCOSYLTRANSFERASE 14 FAMILY MEMBER Panther PTHR19297
Branching enzyme KOG KOG0799
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein AT AT5G15050

Glyma04g18971

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR) superfamily protein AT AT5G48910

Glyma04g18980

Wound-induced protein PFAM PF12609
Wound-responsive family protein AT AT4G10265

Glyma04g19010

ACONITASE Panther PTHR11670
metabolic process PFAM PF00330
metabolic process Panther PTHR11670
aconitase 1 AT AT4G35830

Glyma04g19020

DnaJ/Hsp40 cysteine-rich domain superfamily protein AT AT3G47650

Glyma04g19030

HEME OXYGENASE Panther PTHR10720
Heme oxygenase KOG KOG4480
Activity=heme oxygenase (decyclizing); Pathway=heme degradation SoyCyc PWY-5874
Activity=heme oxygenase decyclizing; Pathway=heme degradation SoyCyc PWY-5874
heme oxidation PFAM PF01126
heme oxidation Panther PTHR10720
Heme oxygenase KOG KOG4480
Plant haem oxygenase (decyclizing) family protein AT AT2G26670

Glyma04g19240

REGULATOR OF CHROMOSOME CONDENSATION Panther PTHR22870
Regulator of chromosome condensation (RCC1) repeat PFAM PF00415
REGULATOR OF CHROMOSOME CONDENSATION Panther PTHR22870
Regulator of chromosome condensation (RCC1) family protein AT AT3G15430

Glyma04g19450

SPX domain PFAM PF03105
XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR Panther PTHR10783
Protein involved in vacuolar polyphosphate accumulation, contains SPX domain KOG KOG1161
SPX domain PFAM PF03105
XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR Panther PTHR10783
Protein involved in vacuolar polyphosphate accumulation, contains SPX domain KOG KOG1161
SPX domain gene 2 AT AT2G26660

Glyma04g19650

AP2 domain PFAM PF00847
sequence-specific DNA binding transcription factor activity PFAM PF00847
Integrase-type DNA-binding superfamily protein AT AT1G15360

Glyma04g19760

Domain of unknown function DUF223 PFAM PF02721
Replication factor-A protein 1-related AT AT5G45400

Glyma04g19870

AT AT3G15760

Glyma04g19880

Tetraspanin family PFAM PF00335
Tetraspanin family integral membrane protein KOG KOG3882
integral to membrane PFAM PF00335
Tetraspanin family integral membrane protein KOG KOG3882
tetraspanin7 AT AT4G28050

Glyma04g20330

Leucine Rich Repeat PFAM PF00560
F-BOX/LEUCINE RICH REPEAT PROTEIN Panther PTHR23125
Leucine rich repeat proteins, some proteins contain F-box KOG KOG1947
F-BOX/LEUCINE RICH REPEAT PROTEIN Panther PTHR23125
Leucine rich repeat proteins, some proteins contain F-box KOG KOG1947
EIN3-binding F box protein 1 AT AT2G25490

Glyma04g20353

nucleoporin-related AT AT5G20200

Glyma04g20376

Protein of unknown function (DUF 659) PFAM PF04937
protein dimerization activity PFAM PF05699
hAT dimerisation domain-containing protein / transposase-related AT AT5G33406

Glyma04g20400

Putative serine esterase (DUF676) PFAM PF05057
UNCHARACTERIZED Panther PTHR12482
Predicted alpha/beta hydrolase KOG KOG4372
Putative serine esterase (DUF676) PFAM PF05057
UNCHARACTERIZED Panther PTHR12482
Predicted alpha/beta hydrolase KOG KOG4372
alpha/beta-Hydrolases superfamily protein AT AT4G25770

Glyma04g20610

Histone-like transcription factor (CBF/NF-Y) and archaeal histone PFAM PF00808
HISTONE H2A Panther PTHR23430
Histone 2A KOG KOG1757
nucleolus GO GO:0005730
nucleus GO GO:0005634
flower development GO GO:0009908
nucleosome GO GO:0000786
detection of temperature stimulus GO GO:0016048
defense response to bacterium GO GO:0042742
vacuole GO GO:0005773
regulation of flower development GO GO:0009909
DNA binding GO GO:0003677
protein binding GO GO:0005515
DNA binding PFAM PF00125
HISTONE H2A Panther PTHR23430
Histone 2A KOG KOG1757
histone H2A KO K11251
histone H2A protein 9 AT AT1G52740

Glyma04g20620

Chalcone and stilbene synthases, C-terminal domain PFAM PF02797
Activity=fatty acid elongase; Pathway=sciadonic acid biosynthesis SoyCyc PWY-6598
response to light stimulus GO GO:0009416
response to cold GO GO:0009409
transferase activity, transferring acyl groups other than amino-acyl groups GO GO:0016747
catalytic activity GO GO:0003824
membrane GO GO:0016020
Activity=fatty acid elongase; Pathway=wax esters biosynthesis I SoyCyc PWY-5884
fatty acid biosynthetic process PFAM PF08392
acyltransferase activity PFAM PF00195
lipid biosynthetic process PFAM PF08541
Chalcone and stilbene synthases, C-terminal domain PFAM PF02797
3-ketoacyl-CoA synthase 11 AT AT2G26640

Glyma04g20640

ATP SYNTHASE Panther PTHR15184
ATP binding PFAM PF00006
ATP SYNTHASE Panther PTHR15184
ATP synthase subunit beta AT ATCG00480

Glyma04g20710

SOUL heme-binding protein PFAM PF04832
HEME-BINDING PROTEIN-RELATED Panther PTHR11220
SOUL heme-binding family protein AT AT5G20140

Glyma04g20780

WD domain, G-beta repeat PFAM PF00400
WD40 REPEAT PROTEIN Panther PTHR22848
transducin family protein / WD-40 repeat family protein AT AT1G73720

Glyma04g20850

Methyltransferase domain PFAM PF08241
PROTEIN ARGININE N-METHYLTRANSFERASE Panther PTHR11006
Protein arginine N-methyltransferase PRMT1 and related enzymes KOG KOG1499
protein methyltransferase activity PFAM PF06325
methyltransferase activity PFAM PF05175
methyltransferase activity PFAM PF05185
Methyltransferase domain PFAM PF08241
PROTEIN ARGININE N-METHYLTRANSFERASE Panther PTHR11006
Protein arginine N-methyltransferase PRMT1 and related enzymes KOG KOG1499
protein arginine methyltransferase 10 AT AT1G04870

Glyma04g20855

ARM repeat superfamily protein AT AT1G27210

Glyma04g20860

PHOSPHOHEXOMUTASE FAMILY MEMBER Panther PTHR22573
intramolecular transferase activity, phosphotransferases PFAM PF02880
PHOSPHOHEXOMUTASE FAMILY MEMBER Panther PTHR22573
Phosphoglucomutase/phosphomannomutase family protein AT AT1G70730

Glyma04g20870

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Protein tyrosine kinase PFAM PF07714
protein phosphorylation PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Protein kinase superfamily protein AT AT5G20050

Glyma04g21090

Phospholipase/Carboxylesterase PFAM PF02230
LYSOPHOSPHOLIPASE-RELATED Panther PTHR10655
Lysophospholipase KOG KOG2112
hydrolase activity PFAM PF02230
Serine hydrolase (FSH1) PFAM PF03959
PFAM PF03583
LYSOPHOSPHOLIPASE-RELATED Panther PTHR10655
Lysophospholipase KOG KOG2112
alpha/beta-Hydrolases superfamily protein AT AT5G20060

Glyma04g21170

nucleic acid binding PFAM PF00098

Glyma04g21250

Protein tyrosine kinase PFAM PF07714
protein phosphorylation PFAM PF00069
CDC2-RELATED KINASE Panther PTHR11295
Cyclin-dependent kinase CDK5 KOG KOG0662
Protein kinase superfamily protein AT AT2G40120

Glyma04g21330

F-box domain PFAM PF00646
protein binding PFAM PF00646
AT AT5G19970

Glyma04g21340

GRAS family transcription factor PFAM PF03514
Transcriptional regulator DELLA protein N terminal PFAM PF12041
GRAS family transcription factor PFAM PF03514
GRAS family transcription factor family protein AT AT1G14920

Glyma04g21376

ATPase activity PFAM PF00005
ATP-BINDING CASSETTE TRANSPORTER Panther PTHR19242
multidrug resistance-associated protein 6 AT AT3G21250

Glyma04g21413

DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT Panther PTHR19376:SF1
DNA-directed RNA polymerase EC 2.7.7.6
DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] KO K03046
DNA-directed RNA polymerase family protein AT ATCG00170

Glyma04g21450

PAZ domain PFAM PF02170
EUKARYOTIC TRANSLATION INITIATION FACTOR 2C Panther PTHR22891
Domain of unknown function (DUF1785) PFAM PF08699
protein binding PFAM PF02170
protein binding PFAM PF02171
EUKARYOTIC TRANSLATION INITIATION FACTOR 2C Panther PTHR22891
Stabilizer of iron transporter SufD / Polynucleotidyl transferase AT AT5G43810
Translation initiation factor 2C (eIF-2C) and related proteins KOG KOG1041

Glyma04g21470

basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT AT5G54680

Glyma04g21680

Myb-like DNA-binding domain PFAM PF00249
Myb-like DNA-binding domain PFAM PF00249
Homeodomain-like superfamily protein AT AT2G03500

Glyma04g21753

protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Leucine-rich repeat protein kinase family protein AT AT2G26730

Glyma04g21826

FAMILY NOT NAMED Panther PTHR13681
Domain of unknown function (DUF1767) AT AT5G19950

Glyma04g21900

Snf7 PFAM PF03357
SNF7-RELATED Panther PTHR10476
Vacuolar sorting protein VPS24 KOG KOG3229
ESCRT III complex GO GO:0000815
vesicle-mediated transport GO GO:0016192
protein transport PFAM PF03357
SNF7-RELATED Panther PTHR10476
Vacuolar sorting protein VPS24 KOG KOG3229
SNF7 family protein AT AT5G22950

Glyma04g21910

Acyl-ACP thioesterase PFAM PF01643
Thiolester hydrolases. EC 3.1.2.-
fatty acyl-ACP thioesterase B [EC:3.1.2.14 3.1.2.-] KO K10781
Oleoyl-[acyl-carrier protein] hydrolase. EC 3.1.2.14
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=acyl-ACP thioesterase pathway SoyCyc PWY-5142
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=superpathway of fatty acid biosynthesis II (plant) SoyCyc PWY-5156
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=oleate biosynthesis I (plants) SoyCyc PWY-5147
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=palmitate biosynthesis II (bacteria and plants) SoyCyc PWY-5971
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=palmitoleate biosynthesis II SoyCyc PWY-5366
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=stearate biosynthesis II (plants) SoyCyc PWY-5989
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=oleate biosynthesis I plants SoyCyc PWY-5147
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=superpathway of fatty acid biosynthesis II plant SoyCyc PWY-5156
thiolester hydrolase activity PFAM PF12590
fatty acid biosynthetic process PFAM PF01643
Thiolester hydrolases. EC 3.1.2.-
oleoyl-[acyl-carrier-protein] hydrolase EC 3.1.2.14
fatty acyl-ACP thioesterase B [EC:3.1.2.14 3.1.2.-] KO K10781
fatty acyl-ACP thioesterases B AT AT1G08510

Glyma04g22020

thylakoid PFAM PF00223
photosystem I P700 chlorophyll a apoprotein A1 KO K02689
Photosystem I, PsaA/PsaB protein AT ATCG00350

Glyma04g22130

Transferase family PFAM PF02458
transferase activity, transferring acyl groups other than amino-acyl groups PFAM PF02458
HXXXD-type acyl-transferase family protein AT AT1G03390

Glyma04g22140

bZIP transcription factor family protein AT AT1G77920

Glyma04g22152

plant U-box 13 AT AT3G46510

Glyma04g22164

nucleus PFAM PF01486
MADS BOX PROTEIN Panther PTHR11945
AGAMOUS-like 6 AT AT2G45650

Glyma04g22177

GLUTATHIONE-S-TRANSFERASE Panther PTHR11260:SF11
glutathione S-transferase TAU 8 AT AT3G09270

Glyma04g22190

X8 domain PFAM PF07983
hydrolase activity, hydrolyzing O-glycosyl compounds PFAM PF00332
X8 domain PFAM PF07983
O-Glycosyl hydrolases family 17 protein AT AT3G24330

Glyma04g22262

Protein of unknown function (DUF1630) PFAM PF07792
UNCHARACTERIZED Panther PTHR13677
Uncharacterized conserved protein KOG KOG2432
AT AT1G73930

Glyma04g22334

ATP-BINDING CASSETTE TRANSPORTERS 6,8,9 Panther PTHR19229:SF7
ABC2 homolog 7 AT AT3G47790

Glyma04g22407

TCP family transcription factor PFAM PF03634
TCP family transcription factor AT AT3G18550

Glyma04g22480

Glyma04g22520

Arabidopsis proteins of unknown function PFAM PF03005
TRICHOME BIREFRINGENCE-LIKE 27 AT AT1G70230

Glyma04g22655

Glyma04g22790

Glyma04g22801

AT AT3G25590

Glyma04g22810

Protein of unknown function (DUF1262) PFAM PF06880
Protein of unknown function (DUF1262) PFAM PF06880
Protein of unknown function (DUF1262) AT AT1G13520

Glyma04g22815

Glyma04g22820

Glyma04g23050

IMPORTIN (RAN-BINDING PROTEIN) Panther PTHR10997
IMPORTIN (RAN-BINDING PROTEIN) Panther PTHR10997
ARM repeat superfamily protein AT AT1G26170

Glyma04g23080

IMPORTIN-ALPHA RE-EXPORTER RELATED Panther PTHR10997:SF9
IMPORTIN-ALPHA RE-EXPORTER RELATED Panther PTHR10997:SF9
ARM repeat superfamily protein AT AT1G26170

Glyma04g23095

ARM repeat superfamily protein AT AT1G26170

Glyma04g23110

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). Panther PTHR22764
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). Panther PTHR22764
RING/U-box superfamily protein AT AT1G23980

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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