Genes Covered By A Chromosome Alteration FN301391.01.01.M4.4

Protein tyrosine kinase PFAM PF07714
protein phosphorylation PFAM PF00069
PAN-like domain PFAM PF08276
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding AT AT1G11300

Glyma09g12252

structural constituent of cell wall PFAM PF02095
EXTENSIN, PROLINE-RICH PROTEIN Panther PTHR23201

Glyma09g12270

serine hydroxymethyltransferase 7 AT AT1G36370

Glyma09g12286

Glyma09g12303

Domain of unknown function DUF21 PFAM PF01595
ANCIENT CONSERVED DOMAIN PROTEIN-RELATED Panther PTHR12064
CBS domain-containing protein with a domain of unknown function (DUF21) AT AT1G03270

Glyma09g12320

AT AT2G12400

Glyma09g12325

Glyma09g12330

PLATZ transcription factor PFAM PF04640
PLATZ transcription factor PFAM PF04640
PLATZ transcription factor family protein AT AT2G12646

Glyma09g12380

DIMETHYLANILINE MONOOXYGENASE Panther PTHR23023
flavin-containing monooxygenase activity PFAM PF00743
Pyridine nucleotide-disulphide oxidoreductase PFAM PF07992
DIMETHYLANILINE MONOOXYGENASE Panther PTHR23023
Flavin-containing monooxygenase KOG KOG1399
flavin-dependent monooxygenase 1 AT AT1G19250

Glyma09g12390

Methyltransferase domain PFAM PF08242
METHYLTRANSFERASE Panther PTHR10108
methyltransferase activity PFAM PF01209
methyltransferase activity PFAM PF08241
Methyltransferase domain PFAM PF08242
METHYLTRANSFERASE Panther PTHR10108
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein AT AT2G41040

Glyma09g12400

DIMETHYLANILINE MONOOXYGENASE Panther PTHR23023
flavin-containing monooxygenase activity PFAM PF00743
Pyridine nucleotide-disulphide oxidoreductase PFAM PF07992
DIMETHYLANILINE MONOOXYGENASE Panther PTHR23023
flavin-dependent monooxygenase 1 AT AT1G19250

Glyma09g12411

Glyma09g12420

Ribosomal protein S17 PFAM PF00366
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER Panther PTHR10744
40S ribosomal protein S11 KOG KOG1728
RP-S11e, RPS11; small subunit ribosomal protein S11e [GO:0005843 ] KO K02949
cell wall GO GO:0005618
cytosolic ribosome GO GO:0022626
membrane GO GO:0016020
embryo development ending in seed dormancy GO GO:0009793
cytosolic small ribosomal subunit GO GO:0022627
translation GO GO:0006412
structural constituent of ribosome GO GO:0003735
intracellular PFAM PF00366
intracellular Panther PTHR10744
40S ribosomal protein S11 KOG KOG1728
small subunit ribosomal protein S11e KO K02949
ribosomal protein S11-beta AT AT5G23740

Glyma09g12430

Ribosomal protein S17 PFAM PF00366
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER Panther PTHR10744
40S ribosomal protein S11 KOG KOG1728
RP-S11e, RPS11; small subunit ribosomal protein S11e [GO:0005843 ] KO K02949
cell wall GO GO:0005618
cytosolic ribosome GO GO:0022626
membrane GO GO:0016020
embryo development ending in seed dormancy GO GO:0009793
cytosolic small ribosomal subunit GO GO:0022627
translation GO GO:0006412
structural constituent of ribosome GO GO:0003735
intracellular PFAM PF00366
intracellular Panther PTHR10744
40S ribosomal protein S11 KOG KOG1728
small subunit ribosomal protein S11e KO K02949
ribosomal protein S11-beta AT AT5G23740

Glyma09g12440

O-methyltransferase PFAM PF00891
O-METHYLTRANSFERASE Panther PTHR11746
Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases KOG KOG3178
protein dimerization activity PFAM PF08100
O-methyltransferase activity PFAM PF00891
O-METHYLTRANSFERASE Panther PTHR11746
Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases KOG KOG3178
O-methyltransferase family protein AT AT4G35160

Glyma09g12480

O-methyltransferase PFAM PF00891
O-METHYLTRANSFERASE Panther PTHR11746
Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases KOG KOG3178
protein dimerization activity PFAM PF08100
O-methyltransferase activity PFAM PF00891
O-METHYLTRANSFERASE Panther PTHR11746
Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases KOG KOG3178
O-methyltransferase family protein AT AT4G35150

Glyma09g12491

Glyma09g12500

Ribosomal L39 protein PFAM PF00832
RIBOSOMAL PROTEIN L39E Panther PTHR19970
60s ribosomal protein L39 KOG KOG0002
RP-L39e, RPL39; large subunit ribosomal protein L39e [GO:0005842 ] KO K02924
intracellular PFAM PF00832
intracellular Panther PTHR19970
60s ribosomal protein L39 KOG KOG0002
large subunit ribosomal protein L39e KO K02924
Ribosomal protein L39 family protein AT AT4G31985

Glyma09g12510

retinoblastoma-related 1 AT AT3G12280

Glyma09g12570

AT AT2G46490

Glyma09g12580

COP-COATED VESICLE MEMBRANE PROTEIN P24 Panther PTHR11071:SF11
COP-COATED VESICLE MEMBRANE PROTEIN P24 Panther PTHR11071:SF11
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein AT AT5G35100

Glyma09g12590

CYCLOPHILIN Panther PTHR11071
Cyclophilin type peptidyl-prolyl cis-trans isomerase KOG KOG0865
protein folding PFAM PF00160
CYCLOPHILIN Panther PTHR11071
Cyclophilin type peptidyl-prolyl cis-trans isomerase KOG KOG0865
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein AT AT5G35100

Glyma09g12800

Activator of Hsp90 ATPase, N-terminal PFAM PF09229
FAMILY NOT NAMED Panther PTHR13009
Uncharacterized conserved protein KOG KOG2936
ATPase activator activity PFAM PF09229
response to stress PFAM PF08327
HEAT SHOCK PROTEIN 90 (HSP90) CO-CHAPERONE AHA-1 Panther PTHR13009
Uncharacterized conserved protein KOG KOG2936
Aha1 domain-containing protein AT AT3G12050

Glyma09g12811

Glyma09g12820

ELK domain PFAM PF03789
HOMEOBOX PROTEIN Panther PTHR11850
Transcription factor MEIS1 and related HOX domain proteins KOG KOG0773
nucleus PFAM PF03790
nucleus PFAM PF03791
nucleus PFAM PF03789
sequence-specific DNA binding PFAM PF00046
HOMEOBOX PROTEIN Panther PTHR11850
Transcription factor MEIS1 and related HOX domain proteins KOG KOG0773
KNOTTED1-like homeobox gene 3 AT AT5G25220

Glyma09g12841

PROGRAMMED CELL DEATH PROTEIN 11 (PRE-RRNA PROCESSING PROTEIN RRP5) Panther PTHR23270
RNA binding;RNA binding AT AT3G11964

Glyma09g12860

AT AT5G25240

Glyma09g12881

protein phosphorylation PFAM PF07714
protein phosphorylation PFAM PF00069
SERINE-THREONINE PROTEIN KINASE Panther PTHR23257
Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain AT AT3G46920

Glyma09g12900

Cytidine/deoxycytidylate deaminase family protein AT AT5G28050

Glyma09g12935

IQ-domain 5 AT AT3G22190

Glyma09g12970

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 24-RELATED Panther PTHR22766
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 24-RELATED Panther PTHR22766
RING/U-box superfamily protein AT AT2G15580

Glyma09g13170

Major Facilitator Superfamily PFAM PF07690
PHOSPHATE TRANSPORTER-RELATED Panther PTHR11662
Permease of the major facilitator superfamily KOG KOG2533
transmembrane transport PFAM PF07690
PHOSPHATE TRANSPORTER-RELATED Panther PTHR11662
Permease of the major facilitator superfamily KOG KOG2533
Major facilitator superfamily protein AT AT2G13100

Glyma09g13180

Protein phosphatase 2C PFAM PF00481
PROTEIN PHOSPHATASE 2C Panther PTHR13832
Serine/threonine protein phosphatase KOG KOG0698
catalytic activity PFAM PF00481
PROTEIN PHOSPHATASE 2C Panther PTHR13832
Serine/threonine protein phosphatase KOG KOG0698
DNA-binding protein phosphatase 1 AT AT2G25620

Glyma09g13210

Endomembrane protein 70 PFAM PF02990
TRANSMEMBRANE 9 SUPERFAMILY PROTEIN MEMBER Panther PTHR10766
Endosomal membrane proteins, EMP70 KOG KOG1278
Golgi apparatus GO GO:0005794
integral to membrane GO GO:0016021
integral to membrane PFAM PF02990
integral to membrane Panther PTHR10766
Endosomal membrane proteins, EMP70 KOG KOG1278
Endomembrane protein 70 protein family AT AT5G35160

Glyma09g13220

Domain of unknown function (DUF1995) PFAM PF09353
ADENYLATE KINASE Panther PTHR23359
Adenylate kinase KOG KOG3078
nucleobase, nucleoside, nucleotide kinase activity PFAM PF00406
Domain of unknown function (DUF1995) PFAM PF09353
nucleobase, nucleoside, nucleotide kinase activity Panther PTHR23359
Adenylate kinase KOG KOG3078
adenylate kinase EC 2.7.4.3
adenylate kinase [EC:2.7.4.3] KO K00939
adenylate kinase family protein AT AT5G35170

Glyma09g13235

PIF1 helicase PFAM PF05970
HELICASE-RELATED Panther PTHR10492
PIF1 helicase AT AT3G51690

Glyma09g13250

Major Facilitator Superfamily PFAM PF07690
SUGAR TRANSPORTER Panther PTHR11600
Predicted transporter (major facilitator superfamily) KOG KOG0254
transmembrane transporter activity PFAM PF00083
SUGAR TRANSPORTER Panther PTHR11600
Predicted transporter (major facilitator superfamily) KOG KOG0254
sugar transporter protein 7 AT AT4G02050

Glyma09g13260

AT AT4G02040

Glyma09g13500

Membrane transport protein PFAM PF03547
transmembrane transport PFAM PF03547
Auxin efflux carrier family protein AT AT5G57090

Glyma09g13521

oxidoreductase activity PFAM PF02738
XANTHINE DEHYDROGENASE Panther PTHR11908
xanthine dehydrogenase 1 AT AT4G34890

Glyma09g13540

Leucine Rich Repeat PFAM PF00560
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Leucine rich repeat N-terminal domain PFAM PF08263
protein binding PFAM PF00560
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Leucine-rich repeat transmembrane protein kinase family protein AT AT5G51350

Glyma09g13570

Fip1 motif PFAM PF05182
Fip1 motif PFAM PF05182
homolog of yeast FIP1 [V] AT AT5G58040

Glyma09g13820

SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Protein tyrosine kinase PFAM PF07714
protein phosphorylation PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Protein kinase family protein AT AT5G38210

Glyma09g13840

Synaptobrevin PFAM PF00957
SNARE PROTEINS Panther PTHR21136
SNARE protein YKT6, synaptobrevin/VAMP syperfamily KOG KOG0861
synaptobrevin homolog YKT6 KO K08516
vesicle-mediated transport GO GO:0016192
transport GO GO:0006810
molecular_function GO GO:0003674
vesicle-mediated transport PFAM PF00957
SNARE PROTEINS Panther PTHR21136
SNARE protein YKT6, synaptobrevin/VAMP syperfamily KOG KOG0861
SNARE-like superfamily protein AT AT5G58060
synaptobrevin homolog YKT6 KO K08516

Glyma09g14050

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Tetratricopeptide repeat (TPR)-like superfamily protein AT AT3G57430

Glyma09g14080

Arabidopsis proteins of unknown function PFAM PF03005
Arabidopsis proteins of unknown function PFAM PF03005
TRICHOME BIREFRINGENCE-LIKE 42 AT AT1G78710

Glyma09g14090

NAF domain PFAM PF03822
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED Panther PTHR22982
Serine/threonine protein kinase KOG KOG0583
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
signal transduction PFAM PF03822
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED Panther PTHR22982
Serine/threonine protein kinase KOG KOG0583
SOS3-interacting protein 3 AT AT4G30960

Glyma09g14100

STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER Panther PTHR18937
chromosome PFAM PF02463
STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER Panther PTHR18937
structural maintenance of chromosome 3 AT AT5G48600

Glyma09g14350

XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR Panther PTHR10783
GH3 auxin-responsive promoter PFAM PF03321
SPX domain PFAM PF03105
XENOTROPIC AND POLYTROPIC MURINE LEUKEMIA VIRUS RECEPTOR Panther PTHR10783
EXS (ERD1/XPR1/SYG1) family protein AT AT1G69480

Glyma09g14365

lipid metabolic process PFAM PF00487
fatty acid desaturase 2 AT AT3G12120

Glyma09g14380

Helix-loop-helix DNA-binding domain PFAM PF00010
TRANSCRIPTION FACTOR EC Panther PTHR10014:SF13
transcription regulator activity PFAM PF00010
TRANSCRIPTION FACTOR EC Panther PTHR10014:SF13
LJRHL1-like 1 AT AT2G24260

Glyma09g14470

SUGAR-INSENSITIVE 3 AT AT3G47990

Glyma09g14560

transcription cofactor activity PFAM PF02135
CBP/P300-RELATED Panther PTHR13808
BTB and TAZ domain protein 1 AT AT5G63160

Glyma09g14650

Myb-like DNA-binding domain PFAM PF00249
SENSOR HISTIDINE KINASE-RELATED Panther PTHR23283
two-component response regulator activity PFAM PF00072
Myb-like DNA-binding domain PFAM PF00249
SENSOR HISTIDINE KINASE-RELATED Panther PTHR23283
two-component response regulator ARR-B family KO K14491
response regulator 12 AT AT2G25180

Glyma09g14660

Calmodulin binding protein-like PFAM PF07887
Calmodulin binding protein-like PFAM PF07887
Calmodulin-binding protein AT AT2G24300

Glyma09g14860

Protein of unknown function (DUF1068) PFAM PF06364
Protein of unknown function (DUF1068) PFAM PF06364
Protein of unknown function (DUF1068) AT AT2G24290

Glyma09g14870

Lipocalin / cytosolic fatty-acid binding protein family PFAM PF00061
OUTER MEMBRANE LIPOPROTEIN BLC Panther PTHR10612:SF7
Apolipoprotein D/Lipocalin KOG KOG4824
binding PFAM PF08212
Lipocalin / cytosolic fatty-acid binding protein family PFAM PF00061
OUTER MEMBRANE LIPOPROTEIN BLC Panther PTHR10612:SF7
Apolipoprotein D/Lipocalin KOG KOG4824
temperature-induced lipocalin AT AT5G58070

Glyma09g14880

B-box zinc finger PFAM PF00643
intracellular PFAM PF00643
light-regulated zinc finger protein 1 AT AT1G78600

Glyma09g15000

protein phosphorylation PFAM PF00069
protein phosphorylation PFAM PF07714
sugar binding PFAM PF01453
recognition of pollen PFAM PF00954
PAN-like domain PFAM PF08276
protein serine/threonine kinase activity PFAM PF11883
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding AT AT1G11300
S-locus lectin protein kinase family protein AT AT4G27290
S-locus lectin protein kinase family protein AT AT1G11410

Glyma09g15120

P-11 zinc finger PFAM PF03854
ubiquitinÂ—protein ligase EC 6.3.2.19
E3 ubiquitin-protein ligase CCNP1IP1 [EC:6.3.2.19] KO K10639
RING/U-box superfamily protein AT AT1G53490

Glyma09g15135

DNA binding PFAM PF02892
protein dimerization activity PFAM PF05699
BED FINGER-RELATED Panther PTHR23272
Tam3-transposase (Ac family) KOG KOG1121
BED zinc finger ;hAT family dimerisation domain AT AT3G42170

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