Genes Covered By A Chromosome Alteration FN301367.01.02.M4.10

Gene Name

Gene Annotation

Glyma13g06040

Carbohydrate phosphorylase PFAM PF00343
GLYCOGEN PHOSPHORYLASE Panther PTHR11468
Glycogen phosphorylase KOG KOG2099
Phosphorylase. EC 2.4.1.1
E2.4.1.1, glgP, PYG; starch phosphorylase [EC:2.4.1.1 ] [COG:COG0058 ] [GO:0004645 0008184 ] [CAZy:GT35 ] KO K00688
Activity=phosphorylase; Pathway=starch degradation I SoyCyc PWY-842
Activity=phosphorylase; Pathway=Glycogen degradation II SoyCyc PWY-5941
Activity=phosphorylase; Pathway=starch degradation SoyCyc PWY-842
Activity=phosphorylase; Pathway=Glycogen degradation I SoyCyc GLYCOCAT-PWY
phosphorylase activity PFAM PF00343
phosphorylase activity Panther PTHR11468
Glycogen phosphorylase KOG KOG2099
phosphorylase EC 2.4.1.1
starch phosphorylase [EC:2.4.1.1] KO K00688
Glycosyl transferase, family 35 AT AT3G29320

Glyma13g06050

UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain PFAM PF03720
UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE Panther PTHR11374
UDP-glucose/GDP-mannose dehydrogenase KOG KOG2666
UDP-glucose 6-dehydrogenase. EC 1.1.1.22
E1.1.1.22, ugd; UDPglucose 6-dehydrogenase [EC:1.1.1.22 ] [COG:COG1004 ] [GO:0003979 ] KO K00012
endomembrane system GO GO:0012505
cell wall GO GO:0005618
coenzyme binding GO GO:0050662
nucleus GO GO:0005634
cytosol GO GO:0005829
oxidation-reduction process GO GO:0055114
NAD binding GO GO:0051287
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO GO:0016616
oxidoreductase activity GO GO:0016491
metabolic process GO GO:0008152
UDP-glucose 6-dehydrogenase activity GO GO:0003979
binding GO GO:0005488
catalytic activity GO GO:0003824
Activity=UDP-glucose 6-dehydrogenase; Pathway=UDP-sugars interconversion SoyCyc PWY-5114
Activity=UDP-glucose 6-dehydrogenase; Pathway=galactose degradation III SoyCyc PWY-3821
Activity=UDP-glucose 6-dehydrogenase; Pathway=UDP-D-xylose and UDP-D-glucuronate biosynthesis SoyCyc PWY-4821
Activity=UDP-glucose 6-dehydrogenase; Pathway=colanic acid building blocks biosynthesis SoyCyc COLANSYN-PWY
Activity=UDP-glucose 6-dehydrogenase; Pathway=UDP-D-xylose biosynthesis SoyCyc PWY-4821
Activity=UDP-glucose 6-dehydrogenase; Pathway=UDP-sugars interconversion SoyCyc PWY-5114
Activity=UDP-glucose 6-dehydrogenase; Pathway=Galactose degradation II SoyCyc PWY-3821
Activity=UDP-glucose 6-dehydrogenase; Pathway=colanic acid building blocks biosynthesis SoyCyc COLANSYN-PWY
NAD binding PFAM PF03721
NAD binding PFAM PF00984
NAD binding PFAM PF03720
UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE Panther PTHR11374
UDP-glucose/GDP-mannose dehydrogenase KOG KOG2666
UDP-glucose 6-dehydrogenase EC 1.1.1.22
UDPglucose 6-dehydrogenase [EC:1.1.1.22] KO K00012
UDP-glucose 6-dehydrogenase family protein AT AT3G29360

Glyma13g06060

Targeting protein for Xklp2 (TPX2) PFAM PF06886
FAMILY NOT NAMED Panther PTHR14326
Targeting protein for Xklp2 (TPX2) PFAM PF06886
TARGETING PROTEIN FOR XKLP2 Panther PTHR14326
TPX2 (targeting protein for Xklp2) protein family AT AT5G15510

Glyma13g06070

Ribosomal protein S19e PFAM PF01090
40S RIBOSOMAL PROTEIN S19 Panther PTHR11710
40S ribosomal protein S19 KOG KOG3411
RP-S19e, RPS19; small subunit ribosomal protein S19e [GO:0005843 ] KO K02966
vacuole GO GO:0005773
nucleolus GO GO:0005730
membrane GO GO:0016020
cell wall GO GO:0005618
cytosolic small ribosomal subunit GO GO:0022627
cytosolic ribosome GO GO:0022626
translation GO GO:0006412
ribosome GO GO:0005840
structural constituent of ribosome GO GO:0003735
intracellular PFAM PF01090
intracellular Panther PTHR11710
40S ribosomal protein S19 KOG KOG3411
small subunit ribosomal protein S19e KO K02966
Ribosomal protein S19e family protein AT AT3G02080

Glyma13g06080

Biotin-requiring enzyme PFAM PF00364
DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED Panther PTHR23151
BCCP, accB; acetyl-CoA carboxylase biotin carboxyl carrier protein [COG:COG0511 ] [GO:0003989 ] KO K02160
Biotin-requiring enzyme PFAM PF00364
DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED Panther PTHR23151
acetyl-CoA carboxylase biotin carboxyl carrier protein KO K02160
biotin carboxyl carrier protein 2 AT AT5G15530

Glyma13g06105

NIPPED-B-LIKE PROTEIN (DELANGIN) SCC2-RELATED Panther PTHR21704
Sister chromatid cohesion protein SCC2/Nipped-B KOG KOG1020
cohesin loading factor subunit SCC2 KO K06672
PHD finger family protein AT AT5G15540

Glyma13g06130

AT AT3G29370

Glyma13g06140

WD domain, G-beta repeat PFAM PF00400
FAMILY NOT NAMED Panther PTHR19855
Microtubule binding protein YTM1 (contains WD40 repeats) KOG KOG0313
NLE (NUC135) domain PFAM PF08154
WD domain, G-beta repeat PFAM PF00400
WD40 REPEAT PROTEIN 12, 37 Panther PTHR19855
Microtubule binding protein YTM1 (contains WD40 repeats) KOG KOG0313
Transducin/WD40 repeat-like superfamily protein AT AT5G15550

Glyma13g06151

transferase activity, transferring hexosyl groups PFAM PF00201
transferase activity, transferring hexosyl groups Panther PTHR11926
UDP-glucuronosyl and UDP-glucosyl transferase KOG KOG1192
UDP-Glycosyltransferase superfamily protein AT AT3G02100

Glyma13g06161

Glyma13g06170

GLUCOSYL/GLUCURONOSYL TRANSFERASES Panther PTHR11926
UDP-glucuronosyl and UDP-glucosyl transferase KOG KOG1192
transferase activity, transferring hexosyl groups PFAM PF00201
transferase activity, transferring hexosyl groups Panther PTHR11926
UDP-glucuronosyl and UDP-glucosyl transferase KOG KOG1192
UDP-Glycosyltransferase superfamily protein AT AT3G02100

Glyma13g06190

hydroxyproline-rich glycoprotein family protein AT AT3G02120

Glyma13g06201

AT AT2G03630

Glyma13g06210

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Leucine rich repeat N-terminal domain PFAM PF08263
protein binding PFAM PF00560
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
receptor-like protein kinase 2 AT AT3G02130

Glyma13g06230

Transferase family PFAM PF02458
transferase activity, transferring acyl groups other than amino-acyl groups PFAM PF02458
HXXXD-type acyl-transferase family protein AT AT5G39090

AT AT1G74160

Glyma13g06300

Glyma13g06321

protein binding PFAM PF03031
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein AT AT4G26190

Glyma13g06340

Prephenate dehydrogenase (NADP+) KOG KOG2380
NADP oxidoreductase coenzyme F420-dependent PFAM PF03807
phosphogluconate dehydrogenase (decarboxylating) activity PFAM PF03446
prephenate dehydrogenase (NADP+) activity PFAM PF02153
cofactor binding PFAM PF02826
DUDULIN-RELATED Panther PTHR14239
Prephenate dehydrogenase (NADP+) KOG KOG2380
arogenate dehydrogenase AT AT5G34930

Glyma13g06365

PIF1 helicase PFAM PF05970
viral genome replication PFAM PF02689
HELICASE-RELATED Panther PTHR10492
PIF1 helicase AT AT3G51690

Glyma13g06390

SPIRAL1-like1 AT AT1G26355

Glyma13g06400

GDP-fucose protein O-fucosyltransferase PFAM PF10250
O-fucosyltransferase family protein AT AT4G17430

Glyma13g06410

PCI domain PFAM PF01399
COP9 COMPLEX SUBUNIT 7A Panther PTHR15350
Uncharacterized conserved protein, contains PCI domain KOG KOG2753
protein binding PFAM PF01399
COP9 COMPLEX SUBUNIT 7A Panther PTHR15350
Uncharacterized conserved protein, contains PCI domain KOG KOG2753
Proteasome component (PCI) domain protein AT AT5G15610

Glyma13g06420

Glyma13g06431

hydrolase activity, acting on ester bonds PFAM PF04827
AT AT2G13770

Activity=polygalacturonase; Pathway=homogalacturonan degradation SoyCyc PWY-1081
Activity=polygalacturonase; Pathway=homogalacturonan degradation SoyCyc PWY-1081
Pectin lyase-like superfamily protein AT AT4G20050

Glyma13g06481

FAMILY NOT NAMED Panther PTHR13322
Uncharacterized conserved protein KOG KOG1988
integrator complex subunit 7 KO K13144
ARM repeat superfamily protein AT AT4G20060

Glyma13g06490

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Di-glucose binding within endoplasmic reticulum PFAM PF11721
protein phosphorylation PFAM PF00069
protein phosphorylation PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Malectin/receptor-like protein kinase family protein AT AT3G51550

Glyma13g06505

Di-glucose binding within endoplasmic reticulum PFAM PF11721
protein phosphorylation PFAM PF00069
protein phosphorylation PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Malectin/receptor-like protein kinase family protein AT AT3G51550

Glyma13g06520

SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
protein phosphorylation PFAM PF00069
protein phosphorylation PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Malectin/receptor-like protein kinase family protein AT AT3G51550

Glyma13g06530

Protein kinase domain PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Di-glucose binding within endoplasmic reticulum PFAM PF11721
Protein kinase domain PFAM PF00069
protein phosphorylation PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Malectin/receptor-like protein kinase family protein AT AT3G51550

Glyma13g06541

protein phosphorylation PFAM PF07714
protein phosphorylation PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Protein kinase superfamily protein AT AT5G59700

Glyma13g06550

Transferase family PFAM PF02458
transferase activity, transferring acyl groups other than amino-acyl groups PFAM PF02458
HXXXD-type acyl-transferase family protein AT AT3G29635

Glyma13g06590

Gibberellin regulated protein PFAM PF02704
GAST1 protein homolog 1 AT AT1G75750

Glyma13g06600

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
protein phosphorylation PFAM PF00069
protein phosphorylation PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Malectin/receptor-like protein kinase family protein AT AT3G51550

Glyma13g06620

Protein kinase domain PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Di-glucose binding within endoplasmic reticulum PFAM PF11721
Protein kinase domain PFAM PF00069
protein phosphorylation PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Malectin/receptor-like protein kinase family protein AT AT3G51550

Glyma13g06630

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Di-glucose binding within endoplasmic reticulum PFAM PF11721
protein phosphorylation PFAM PF00069
protein phosphorylation PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Malectin/receptor-like protein kinase family protein AT AT3G51550

Glyma13g06640

Uncharacterized conserved protein (DUF2039) PFAM PF10217
FAMILY NOT NAMED Panther PTHR22876
Uncharacterized conserved protein KOG KOG3241
Uncharacterized conserved protein (DUF2039) PFAM PF10217
FAMILY NOT NAMED Panther PTHR22876
Uncharacterized conserved protein KOG KOG3241
AT AT3G02220

Glyma13g06650

Mitochondrial carrier protein PFAM PF00153
MITOCHONDRIAL CARRIER PROTEIN RELATED Panther PTHR11896
Predicted mitochondrial carrier protein KOG KOG0765
Mitochondrial carrier protein PFAM PF00153
MITOCHONDRIAL CARRIER PROTEIN RELATED Panther PTHR11896
Predicted mitochondrial carrier protein KOG KOG0765
Mitochondrial substrate carrier family protein AT AT5G15640

Glyma13g06660

COBRA-like protein PFAM PF04833
COBRA-like protein PFAM PF04833
COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family AT AT5G60920

Glyma13g06671

COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family AT AT5G15630

Glyma13g06680

N2,N2-dimethylguanosine tRNA methyltransferase PFAM PF02005
N2,N2-DIMETHYLGUANOSINE TRNA METHYLTRANSERASE RELATED Panther PTHR10631
tRNA methyltransferase KOG KOG1253
tRNA (guanine-N2-)-methyltransferase. EC 2.1.1.32
tRNA (guanine-N2-)-methyltransferase [EC:2.1.1.32] KO K00555
tRNA processing PFAM PF02005
tRNA processing Panther PTHR10631
tRNA methyltransferase KOG KOG1253
transferred, now EC 2.1.1.213, EC 2.1.1.214, EC 2.1.1.215 and EC 2.1.1.216 EC 2.1.1.32
tRNA (guanine-N2-)-methyltransferase [EC:2.1.1.32] KO K00555
N2,N2-dimethylguanosine tRNA methyltransferase AT AT5G15810

Glyma13g06690

Reversibly glycosylated polypeptide PFAM PF03214
cellular cell wall organization GO GO:0007047
cellulose biosynthetic process GO GO:0030244
Golgi stack GO GO:0005795
Golgi trans cisterna GO GO:0000138
cellulose synthase (UDP-forming) activity GO GO:0016760
vacuolar membrane GO GO:0005774
plant-type cell wall biogenesis GO GO:0009832
membrane GO GO:0016020
response to salt stress GO GO:0009651
response to cadmium ion GO GO:0046686
cell wall GO GO:0005618
cytosolic ribosome GO GO:0022626
transferase activity, transferring hexosyl groups GO GO:0016758
glycogenin glucosyltransferase activity GO GO:0008466
Activity=Glycogenin glucosyltransferase; Pathway=Glycogen biosynthesis II from UDP-D-glucose SoyCyc PWY-5067
glycogenin glucosyltransferase activity PFAM PF03214
Hexosyltransferases. EC 2.4.1.-
Transferring other groups. EC 5.4.99.-
reversibly glycosylated polypeptide/UDP-arabinopyranose mutase [EC:2.4.1.- 5.4.99.-] KO K13379
reversibly glycosylated polypeptide 2 AT AT5G15650

Glyma13g06700

Cytochrome P450 PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
Cytochrome P450 CYP4/CYP19/CYP26 subfamilies KOG KOG0157
Activity=monooxygenase; Pathway=phaseic acid biosynthesis SoyCyc PWY-5271
Activity=monooxygenase; Pathway=suberin biosynthesis SoyCyc PWY-1121
Activity=monooxygenase; Pathway=brassinosteroid biosynthesis II SoyCyc PWY-2582
Activity=monooxygenase; Pathway=phenylpropanoid biosynthesis SoyCyc PWY-361
Activity=monooxygenase; Pathway=rosmarinic acid biosynthesis I SoyCyc PWY-5048
Activity=monooxygenase; Pathway=brassinosteroid biosynthesis I SoyCyc PWY-699
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
Cytochrome P450 CYP4/CYP19/CYP26 subfamilies KOG KOG0157
brassinosteroid-6-oxidase 2 AT AT3G30180
Acting on paired donors, with incorporation or reduction of EC 1.14.-.-
cytochrome P450, family 85, subfamily A, polypeptide 2 (brassinosteroid-6-oxidase 2) [EC:1.14.-.-] KO K12640

Glyma13g06715

oxidoreductase activity PFAM PF03171
FE(II)/ ASCORBATE OXIDASE SUPERFAMILY Panther PTHR10209
Iron/ascorbate family oxidoreductases KOG KOG0143
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein AT AT5G24530

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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