Genes Covered By A Chromosome Alteration FN301335.01.01.M4.1

Major Facilitator Superfamily PFAM PF07690
DRUG TRANSPORTER-RELATED Panther PTHR10074
Predicted transporter/transmembrane protein KOG KOG2325
SPX domain PFAM PF03105
transmembrane transport PFAM PF07690
DRUG TRANSPORTER-RELATED Panther PTHR10074
Predicted transporter/transmembrane protein KOG KOG2325
Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein AT AT4G22990

Glyma09g23970

Predicted K+/H+-antiporter KOG KOG1650
cation transport PFAM PF00999
Predicted K+/H+-antiporter KOG KOG1650
cation/H+ exchanger 4 AT AT3G44900

Glyma09g23980

SGS domain PFAM PF05002
CHAPERONE BINDING PROTEIN Panther PTHR22904
Serine-threonine phosphatase 2A, catalytic subunit KOG KOG0376
protein binding PFAM PF00515
Tetratricopeptide repeat PFAM PF07719
CS domain PFAM PF04969
SGS domain PFAM PF05002
CHAPERONE BINDING PROTEIN Panther PTHR22904
Suppressor of G2 allele of skp1 KOG KOG1309
suppressor of G2 allele of SKP1 KO K12795
phosphatase-related AT AT4G11260

Glyma09g24010

VQ motif-containing protein AT AT5G53830

Glyma09g24020

K-box region and MADS-box transcription factor family protein AT AT4G18960

Glyma09g24070

ETC complex I subunit conserved region PFAM PF04716
FAMILY NOT NAMED Panther PTHR12653
NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit KOG KOG3365
NADH dehydrogenase (ubiquinone). EC 1.6.5.3
NDUFA5; NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 [EC:1.6.5.3 1.6.99.3 ] [GO:0008137 0003954 ] KO K03949
NADH dehydrogenase. EC 1.6.99.3
mitochondrial respiratory chain complex I GO GO:0005747
membrane GO GO:0016020
respiratory chain complex I GO GO:0045271
photorespiration GO GO:0009853
mitochondrial membrane GO GO:0031966
chloroplast GO GO:0009507
mitochondrion GO GO:0005739
oxidoreductase activity, acting on NADH or NADPH GO GO:0016651
respiratory electron transport chain PFAM PF04716
NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-B SUBUNIT Panther PTHR12653
NADH:ubiquinone oxidoreductase, NDUFA5/B13 subunit KOG KOG3365
NADH:ubiquinone reductase (H+-translocating) EC 1.6.5.3
NADH dehydrogenase EC 1.6.99.3
NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 [EC:1.6.5.3 1.6.99.3] KO K03949
NADH-ubiquinone oxidoreductase-related AT AT5G52840

Glyma09g24080

WRKY DNA -binding domain PFAM PF03106
sequence-specific DNA binding PFAM PF03106
WRKY family transcription factor AT AT4G01250

Glyma09g24090

Tic22-like family PFAM PF04278
Tic22-like family protein AT AT5G62650

Glyma09g24100

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR) superfamily protein AT AT4G21190

Glyma09g24110

Pentatricopeptide repeat (PPR) superfamily protein AT AT5G24060

Glyma09g24120

Eukaryotic and archaeal DNA primase small subunit PFAM PF01896
DNA primase activity PFAM PF01896
DNA primase activity PFAM PF03121
DNA primases AT AT5G52800

Glyma09g24125

Glyma09g24130

CBS domain pair PFAM PF00571
ANCIENT CONSERVED DOMAIN PROTEIN-RELATED Panther PTHR12064
Domain of unknown function DUF21 PFAM PF01595
ANCIENT CONSERVED DOMAIN PROTEIN-RELATED Panther PTHR12064
Predicted membrane protein, contains two CBS domains KOG KOG2118
CBS domain-containing protein with a domain of unknown function (DUF21) AT AT5G52790

Glyma09g24140

AT AT1G64700

Glyma09g24150

CBS domain pair PFAM PF00571
ANCIENT CONSERVED DOMAIN PROTEIN-RELATED Panther PTHR12064
Predicted membrane protein, contains two CBS domains KOG KOG2118
Domain of unknown function DUF21 PFAM PF01595
ANCIENT CONSERVED DOMAIN PROTEIN-RELATED Panther PTHR12064
Predicted membrane protein, contains two CBS domains KOG KOG2118
CBS domain-containing protein with a domain of unknown function (DUF21) AT AT1G47330

Glyma09g24156

protein binding PFAM PF00646
F-box/RNI-like superfamily protein AT AT3G29830

Glyma09g24163

protein binding PFAM PF00646
FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein AT AT5G22660

Glyma09g24170

COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Heavy metal transport/detoxification superfamily protein AT AT1G01490
metal ion transport PFAM PF00403
Copper chaperone KOG KOG1603

Glyma09g24190

Heavy-metal-associated domain PFAM PF00403
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Copper chaperone KOG KOG1603
metal ion transport PFAM PF00403
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Copper chaperone KOG KOG1603
Heavy metal transport/detoxification superfamily protein AT AT1G01490

Glyma09g24220

Heavy-metal-associated domain PFAM PF00403
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Copper chaperone KOG KOG1603
metal ion transport PFAM PF00403
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Copper chaperone KOG KOG1603
Heavy metal transport/detoxification superfamily protein AT AT1G01490

Glyma09g24230

ATP-BINDING CASSETTE TRANSPORTER Panther PTHR19241
ATP-BINDING CASSETTE TRANSPORTER Panther PTHR19241
pleiotropic drug resistance 12 AT AT1G15520

Glyma09g24245

BED FINGER-RELATED Panther PTHR23272
BED zinc finger ;hAT family dimerisation domain AT AT3G42170

Glyma09g24260

Heavy-metal-associated domain PFAM PF00403
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Copper chaperone KOG KOG1603
metal ion transport PFAM PF00403
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Copper chaperone KOG KOG1603
Heavy metal transport/detoxification superfamily protein AT AT1G01490

Glyma09g24270

Heavy-metal-associated domain PFAM PF00403
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Copper chaperone KOG KOG1603
metal ion transport PFAM PF00403
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Copper chaperone KOG KOG1603
Heavy metal transport/detoxification superfamily protein AT AT1G01490

Glyma09g24280

14-3-3 Panther PTHR18860
14-3-3 protein PFAM PF00244
protein domain specific binding Panther PTHR18860
general regulatory factor 9 AT AT2G42590

Glyma09g24310

Aluminium induced protein PFAM PF12504
Aluminium induced protein with YGL and LRDR motifs AT AT5G19140

Glyma09g24321

metal ion transport PFAM PF00403
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Copper chaperone KOG KOG1603
Heavy metal transport/detoxification superfamily protein AT AT1G01490

Glyma09g24330

RNA-binding CRS1 / YhbY (CRM) domain-containing protein AT AT1G23400

Glyma09g24353

metal ion transport PFAM PF00403
COPPER TRANSPORT PROTEIN ATOX1-RELATED Panther PTHR22814
Copper chaperone KOG KOG1603
Heavy metal transport/detoxification superfamily protein AT AT1G01490

Glyma09g24376

HELICASE-RELATED Panther PTHR10492

Glyma09g24400

Myb-like DNA-binding domain PFAM PF00249
SWI/SNF COMPLEX-RELATED Panther PTHR12802
Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains KOG KOG0724
Myb-like DNA-binding domain PFAM PF00249
SWI/SNF COMPLEX-RELATED Panther PTHR12802
Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains KOG KOG0724
Homeodomain-like superfamily protein AT AT5G52660

Glyma09g24410

Hsp90 protein PFAM PF00183
HEAT SHOCK PROTEIN 90 Panther PTHR11528
Molecular chaperone (HSP90 family) KOG KOG0019
HTPG; molecular chaperone HtpG (Hsp90) [COG:COG0326 ] KO K04079
vacuolar membrane GO GO:0005774
apoplast GO GO:0048046
response to stress GO GO:0006950
cellular response to calcium ion GO GO:0071277
membrane GO GO:0016020
response to salt stress GO GO:0009651
nucleolus GO GO:0005730
response to water deprivation GO GO:0009414
mitochondrion GO GO:0005739
nucleus GO GO:0005634
heat acclimation GO GO:0010286
leaf development GO GO:0048366
protein stabilization GO GO:0050821
flower development GO GO:0009908
defense response GO GO:0006952
protein folding GO GO:0006457
ATP catabolic process GO GO:0006200
ATPase activity GO GO:0016887
cytosol GO GO:0005829
cell wall GO GO:0005618
plasma membrane GO GO:0005886
defense response to bacterium GO GO:0042742
unfolded protein binding GO GO:0051082
response to arsenic-containing substance GO GO:0046685
ATP binding GO GO:0005524
response to heat GO GO:0009408
defense response to bacterium, incompatible interaction GO GO:0009816
protein binding GO GO:0005515
ATP binding PFAM PF02518
protein folding PFAM PF00183
protein folding Panther PTHR11528
Molecular chaperone (HSP90 family) KOG KOG0019
molecular chaperone HtpG KO K04079
heat shock protein 90.1 AT AT5G52640

Glyma09g24421

Glutamine cyclotransferase PFAM PF05096
glutaminyl cyclase AT AT4G25720

Glyma09g24431

AT AT4G02210

Glyma09g24440

Glutamine cyclotransferase PFAM PF05096
Glutamine cyclotransferase PFAM PF05096
glutaminyl cyclase AT AT4G25720

Glyma09g24450

Glutamine cyclotransferase PFAM PF05096
Glutamine cyclotransferase PFAM PF05096
glutaminyl cyclase AT AT4G25720

Glyma09g24470

Glycosyl hydrolases family 28 PFAM PF00295
polygalacturonase activity PFAM PF00295
Pectin lyase-like superfamily protein AT AT3G61490

Glyma09g24530

Fatty acid hydroxylase superfamily PFAM PF04116
With NADH or NADPH as one donor, and incorporation of one atom EC 1.14.13.-
CRTR; beta-carotene hydroxylase [EC:1.14.13.- ] [COG:COG3239 ] KO K02294
fatty acid biosynthetic process PFAM PF04116
With NADH or NADPH as one donor, and incorporation of one atom EC 1.14.13.-
beta-carotene hydroxylase [EC:1.14.13.-] KO K02294
beta-hydroxylase 1 AT AT4G25700

Glyma09g24580

CobQ/CobB/MinD/ParA nucleotide binding domain PFAM PF01656
gb def: Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, Panther PTHR23264:SF1
Predicted ATPase, nucleotide-binding KOG KOG3022
MIND; septum site-determining protein MinD [COG:COG2894 ] KO K03609
ATPase activity GO GO:0016887
protein homodimerization activity GO GO:0042803
calcium-dependent ATPase activity GO GO:0030899
chloroplast GO GO:0009507
chloroplast fission GO GO:0010020
identical protein binding GO GO:0042802
protein binding GO GO:0005515
ATP catabolic process GO GO:0006200
PFAM PF09140
CobQ/CobB/MinD/ParA nucleotide binding domain PFAM PF01656
Anion-transporting ATPase PFAM PF02374
PFAM PF00142
gb def: Mus musculus 9 days embryo whole body cDNA, RIKEN full-length enriched library, Panther PTHR23264:SF1
Predicted ATPase, nucleotide-binding KOG KOG3022
septum site-determining protein MinD KO K03609
septum site-determining protein (MIND) AT AT5G24020

Glyma09g24590

Multicopper oxidase PFAM PF07731
MULTI-COPPER OXIDASE Panther PTHR11709
Multicopper oxidases KOG KOG1263
oxidoreductase activity PFAM PF07732
oxidoreductase activity PFAM PF00394
oxidoreductase activity PFAM PF07731
MULTI-COPPER OXIDASE Panther PTHR11709
Multicopper oxidases KOG KOG1263
Cupredoxin superfamily protein AT AT4G12420

Glyma09g24610

AT AT4G25670

Glyma09g24621

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR) superfamily protein AT AT5G42450

Glyma09g24630

PPPDE putative peptidase domain PFAM PF05903
UNCHARACTERIZED Panther PTHR12378
Uncharacterized conserved protein KOG KOG0324
PPPDE putative peptidase domain PFAM PF05903
UNCHARACTERIZED Panther PTHR12378
Uncharacterized conserved protein KOG KOG0324
PPPDE putative thiol peptidase family protein AT AT4G25680

Glyma09g24650

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
protein phosphorylation PFAM PF07714
protein phosphorylation PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Protein kinase superfamily protein AT AT5G24010

Glyma09g24660

FAMILY NOT NAMED Panther PTHR21245
nucleic acid binding PFAM PF00076
FAMILY NOT NAMED Panther PTHR21245
AT AT5G52545

Glyma09g24670

Prolyl-tRNA synthetase, C-terminal PFAM PF09180
TRNA SYNTHETASE-RELATED Panther PTHR11451
Prolyl-tRNA synthetase KOG KOG4163
Proline--tRNA ligase. EC 6.1.1.15
E6.1.1.15, proS; prolyl-tRNA synthetase [EC:6.1.1.15 ] [COG:COG0442 ] [GO:0004827 ] KO K01881
seed development GO GO:0048316
embryo sac development GO GO:0009553
regulation of photosynthesis GO GO:0010109
chloroplast GO GO:0009507
ovule development GO GO:0048481
mitochondrion GO GO:0005739
chloroplast stroma GO GO:0009570
tRNA aminoacylation for protein translation GO GO:0006418
ATP binding GO GO:0005524
proline-tRNA ligase activity GO GO:0004827
aminoacyl-tRNA ligase activity GO GO:0004812
nucleotide binding GO GO:0000166
aminoacyl-tRNA ligase activity PFAM PF00587
aminoacyl-tRNA ligase activity PFAM PF03129
nucleotide binding PFAM PF09180
TRNA SYNTHETASE-RELATED Panther PTHR11451
Prolyl-tRNA synthetase KOG KOG4163
prolineÂ—tRNA ligase EC 6.1.1.15
prolyl-tRNA synthetase [EC:6.1.1.15] KO K01881
Class II aaRS and biotin synthetases superfamily protein AT AT5G52520

Glyma09g24705

heat shock protein binding PFAM PF00226
DNAJ/HSP40 Panther PTHR11821
Chaperone DnaJ-domain superfamily protein AT AT4G36040

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