SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

← Mutant Description Page

Genes Covered By A Chromosome Alteration FN300198.03.X.M4.1

Gene NameGene Annotation
Glyma13g42110
  • ProFAR isomerase associatedPFAMPF07060
  • RNA-binding ASCH domain proteinATAT2G43465
Glyma13g42121
Glyma13g42130
  • Protein of unknown function (DUF3755)PFAMPF12579
  • Protein of unknown function (DUF3755)ATAT3G07565
Glyma13g42140
Glyma13g42150
  • TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINPantherPTHR22957
  • Ypt/Rab-specific GTPase-activating protein GYP7 and related proteinsKOGKOG2197
  • Rab GTPase activator activityPFAMPF00566
  • TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINPantherPTHR22957
  • Ypt/Rab-specific GTPase-activating protein GYP7 and related proteinsKOGKOG2197
  • Ypt/Rab-GAP domain of gyp1p superfamily proteinATAT2G43490
Glyma13g42160
Glyma13g42170
Glyma13g42180
  • TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINPantherPTHR22957
  • Ypt/Rab-specific GTPase-activating protein GYP1KOGKOG1092
  • Rab GTPase activator activityPFAMPF00566
  • TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEINPantherPTHR22957
  • Ypt/Rab-specific GTPase-activating protein GYP1KOGKOG1092
  • Ypt/Rab-GAP domain of gyp1p superfamily proteinATAT2G30710
Glyma13g42200
Glyma13g42210
  • Chitinase class IPFAMPF00182
  • CHITINASE-RELATEDPantherPTHR22595
  • Predicted chitinaseKOGKOG4742
  • Chitinase.EC3.2.1.14
  • E3.2.1.14; chitinase [EC:3.2.1.14 ] [COG:COG3325 ] [GO:0004568 0008843 ] [CAZy:GH19 ]KOK01183
  • chitin bindingPFAMPF00187
  • chitin catabolic processPFAMPF00182
  • CHITINASE-RELATEDPantherPTHR22595
  • Predicted chitinaseKOGKOG4742
  • chitinaseEC3.2.1.14
  • chitinase [EC:3.2.1.14]KOK01183
  • homolog of carrot EP3-3 chitinaseATAT3G54420
Glyma13g42221
  • PPR repeatPFAMPF01535
  • PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEINPantherPTHR10483
  • Tetratricopeptide repeat (TPR)-like superfamily proteinATAT4G39530
Glyma13g42230
  • Ataxin-2 C-terminal regionPFAMPF07145
  • FAMILY NOT NAMEDPantherPTHR12854
  • Protein interacting with poly(A)-binding proteinKOGKOG2375
  • LsmAD domainPFAMPF06741
  • Ataxin-2 C-terminal regionPFAMPF07145
  • ATAXIN 2-RELATEDPantherPTHR12854
  • Protein interacting with poly(A)-binding proteinKOGKOG2375
  • CTC-interacting domain 4ATAT3G14010
Glyma13g42250
  • PHD-fingerPFAMPF00628
  • PHD/F-BOX CONTAINING PROTEINPantherPTHR23123
  • Uncharacterized PHD Zn-finger proteinKOGKOG1632
  • Domain of unknown function (DUF3594)PFAMPF12165
  • protein bindingPFAMPF00628
  • PHD/F-BOX CONTAINING PROTEINPantherPTHR23123
  • Uncharacterized PHD Zn-finger proteinKOGKOG1632
  • alfin-like 3ATAT3G42790
Glyma13g42270
  • Pyridoxal-phosphate dependent enzymePFAMPF00291
  • PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILYPantherPTHR10314
  • threonine synthaseEC4.2.3.1
  • E4.2.3.1, thrC; threonine synthase [EC:4.2.3.1 ] [COG:COG0498 ] [GO:0004795 ]KOK01733
  • pyridoxal phosphate bindingGOGO:0030170
  • catalytic activityGOGO:0003824
  • chloroplastGOGO:0009507
  • threonine synthase activityGOGO:0004795
  • threonine biosynthetic processGOGO:0009088
  • metabolic processGOGO:0008152
  • cellular amino acid metabolic processGOGO:0006520
  • Activity=threonine synthase; Pathway=superpathway of lysine, threonine and methionine biosynthesis IISoyCycPWY-724
  • Activity=threonine synthase; Pathway=isoleucine biosynthesis ISoyCycPWY-3001
  • Activity=threonine synthase; Pathway=threonine biosynthesis from homoserineSoyCycHOMOSER-THRESYN-PWY
  • Activity=threonine synthase; Pathway=threonine biosynthesisSoyCycTHRESYN-PWY
  • Activity=threonine synthase; Pathway=threonine biosynthesis from homoserineSoyCycHOMOSER-THRESYN-PWY
  • Activity=threonine synthase; Pathway=threonine biosynthesisSoyCycTHRESYN-PWY
  • Activity=threonine synthase; Pathway=superpathway of lysine, threonine and methionine biosynthesis ISoyCycP4-PWY
  • Activity=threonine synthase; Pathway=isoleucine biosynthesis ISoyCycPWY-3001
  • Activity=threonine synthase; Pathway=superpathway of lysine, threonine and methionine biosynthesis IISoyCycPWY-724
  • Activity=threonine synthase; Pathway=aspartate superpathwaySoyCycPWY0-781
  • pyridoxal phosphate bindingPFAMPF00291
  • PYRIDOXAL-5-PHOSPHATE DEPENDENT BETA FAMILYPantherPTHR10314
  • threonine synthaseEC4.2.3.1
  • threonine synthase [EC:4.2.3.1]KOK01733
  • Pyridoxal-5\'-phosphate-dependent enzyme family proteinATAT4G29840
Glyma13g42280
  • hydroxyproline-rich glycoprotein family proteinATAT1G72790
Glyma13g42291
  • response to stressPFAMPF00582
  • protein phosphorylationPFAMPF00069
  • Protein tyrosine kinasePFAMPF07714
  • SERINE-THREONINE PROTEIN KINASE, PLANT-TYPEPantherPTHR23258
  • Serine/threonine protein kinaseKOGKOG1187
  • Protein kinase protein with adenine nucleotide alpha hydrolases-like domainATAT1G17540
Glyma13g42300
  • Tim17/Tim22/Tim23 familyPFAMPF02466
  • FAMILY NOT NAMEDPantherPTHR15371
  • Mitochondrial import inner membrane translocase, subunit TIM23KOGKOG3324
  • mitochondrial inner membranePFAMPF02466
  • TIM23PantherPTHR15371
  • Mitochondrial import inner membrane translocase, subunit TIM23KOGKOG3324
  • translocase inner membrane subunit 23-2ATAT1G72750
Glyma13g42310
  • LipoxygenasePFAMPF00305
  • LIPOXYGENASEPantherPTHR11771
  • Activity=phytoene dehydrogenase; Pathway=jasmonic acid biosynthesisSoyCycPWY-735
  • Activity=phytoene dehydrogenase; Pathway=traumatin and (Z)-3-hexen-1-yl acetate biosynthesisSoyCycPWY-5410
  • Activity=phytoene dehydrogenase; Pathway=divinyl ether biosynthesis II 13-LOXSoyCycPWY-5409
  • Activity=phytoene dehydrogenase; Pathway=trans-lycopene biosynthesisSoyCycPWY-5942
  • Activity=phytoene dehydrogenase; Pathway=13-LOX and 13-HPL pathwaySoyCycPWY-5410
  • Activity=phytoene dehydrogenase; Pathway=superpathway of carotenoid biosynthesisSoyCycCAROTENOID-PWY
  • Activity=phytoene dehydrogenase; Pathway=superpathway of lipoxygenaseSoyCycPWY-5433
  • Activity=phytoene dehydrogenase; Pathway=jasmonic acid biosynthesisSoyCycPWY-735
  • protein bindingPFAMPF01477
  • oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygenPFAMPF00305
  • metal ion bindingPantherPTHR11771
  • lipoxygenase 1ATAT1G55020
Glyma13g42320
  • LipoxygenasePFAMPF00305
  • LIPOXYGENASEPantherPTHR11771
  • Activity=lipoxygenase; Pathway=jasmonic acid biosynthesisSoyCycPWY-735
  • Activity=lipoxygenase; Pathway=traumatin and (Z)-3-hexen-1-yl acetate biosynthesisSoyCycPWY-5410
  • Activity=lipoxygenase; Pathway=13-LOX and 13-HPL pathwaySoyCycPWY-5410
  • Activity=lipoxygenase; Pathway=superpathway of lipoxygenaseSoyCycPWY-5433
  • Activity=lipoxygenase; Pathway=jasmonic acid biosynthesisSoyCycPWY-735
  • Activity=lipoxygenase; Pathway=divinyl ether biosynthesis II 13-LOXSoyCycPWY-5409
  • protein bindingPFAMPF01477
  • oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygenPFAMPF00305
  • metal ion bindingPantherPTHR11771
  • lipoxygenase 1ATAT1G55020
Glyma13g42330
  • LipoxygenasePFAMPF00305
  • LIPOXYGENASEPantherPTHR11771
  • Activity=lipoxygenase; Pathway=jasmonic acid biosynthesisSoyCycPWY-735
  • Activity=lipoxygenase; Pathway=traumatin and (Z)-3-hexen-1-yl acetate biosynthesisSoyCycPWY-5410
  • Activity=lipoxygenase; Pathway=13-LOX and 13-HPL pathwaySoyCycPWY-5410
  • Activity=lipoxygenase; Pathway=superpathway of lipoxygenaseSoyCycPWY-5433
  • Activity=lipoxygenase; Pathway=jasmonic acid biosynthesisSoyCycPWY-735
  • Activity=lipoxygenase; Pathway=divinyl ether biosynthesis II 13-LOXSoyCycPWY-5409
  • protein bindingPFAMPF01477
  • oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygenPFAMPF00305
  • metal ion bindingPantherPTHR11771
  • lipoxygenase 1ATAT1G55020
Glyma13g42340
  • LipoxygenasePFAMPF00305
  • LIPOXYGENASEPantherPTHR11771
  • Activity=lipoxygenase; Pathway=jasmonic acid biosynthesisSoyCycPWY-735
  • Activity=lipoxygenase; Pathway=traumatin and (Z)-3-hexen-1-yl acetate biosynthesisSoyCycPWY-5410
  • Activity=lipoxygenase; Pathway=13-LOX and 13-HPL pathwaySoyCycPWY-5410
  • Activity=lipoxygenase; Pathway=superpathway of lipoxygenaseSoyCycPWY-5433
  • Activity=lipoxygenase; Pathway=jasmonic acid biosynthesisSoyCycPWY-735
  • Activity=lipoxygenase; Pathway=divinyl ether biosynthesis II 13-LOXSoyCycPWY-5409
  • protein bindingPFAMPF01477
  • oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygenPFAMPF00305
  • metal ion bindingPantherPTHR11771
  • lipoxygenase 1ATAT1G55020
Glyma13g42360
Glyma13g42370
  • Domain of unknown function (DUF3511)PFAMPF12023
  • Protein of unknown function (DUF3511)ATAT5G11970
Glyma13g42380
  • Protein kinase domainPFAMPF00069
  • CASEIN KINASE-RELATEDPantherPTHR11909
  • Casein kinase (serine/threonine/tyrosine protein kinase)KOGKOG1163
  • non-specific serine/threonine protein kinaseEC2.7.11.1
  • CSNK1, CK1; casein kinase 1 [EC:2.7.1.- ] [GO:0004681 ]KOK02218
  • protein phosphorylationPFAMPF00069
  • Protein tyrosine kinasePFAMPF07714
  • CASEIN KINASE-RELATEDPantherPTHR11909
  • Casein kinase (serine/threonine/tyrosine protein kinase)KOGKOG1163
  • non-specific serine/threonine protein kinaseEC2.7.11.1
  • casein kinase 1 [EC:2.7.11.1]KOK02218
  • casein kinase 1-like protein 2ATAT1G72710
Glyma13g42390
  • haloacid dehalogenase-like hydrolasePFAMPF00702
  • CATION-TRANSPORTING ATPASEPantherPTHR11939
  • P-type ATPaseKOGKOG0206
  • Magnesium-ATPase.EC3.6.3.1
  • phospholipid-translocating ATPase [EC:3.6.3.1]KOK01530
  • nucleotide bindingPFAMPF00122
  • catalytic activityPFAMPF00702
  • CATION-TRANSPORTING ATPASEPantherPTHR11939
  • P-type ATPaseKOGKOG0206
  • Mg2+-ATPaseEC3.6.3.1
  • phospholipid-translocating ATPase [EC:3.6.3.1]KOK01530
  • ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family proteinATAT1G17500
Glyma13g42401
Glyma13g42411
  • hydrolase activityPFAMPF00149
  • SERINE/THREONINE PROTEIN PHOSPHATASEPantherPTHR11668
  • Serine/threonine specific protein phosphatase PP1, catalytic subunitKOGKOG0374
  • serine/threonine phosphatase 7ATAT5G63870
Glyma13g42420
  • Survival protein SurEPFAMPF01975
  • hydrolase activityPFAMPF01975
  • 5'-nucleotidaseEC3.1.3.5
  • 5'-nucleotidase [EC:3.1.3.5]KOK03787
  • Survival protein SurE-like phosphatase/nucleotidaseATAT1G72880
Glyma13g42431
  • Myb-like DNA-binding domainPFAMPF00249
  • MYB-RELATEDPantherPTHR10641
  • Transcription factor, Myb superfamilyKOGKOG0048
  • myb proto-oncogene protein, plantKOK09422
  • myb domain protein 26ATAT3G13890
Glyma13g42440
Glyma13g42450
Glyma13g42460
Glyma13g42470
  • Clathrin adaptor complex small chainPFAMPF01217
  • ZETA-COAT PROTEINPantherPTHR11043
  • Vesicle coat complex COPI, zeta subunitKOGKOG3343
  • Clathrin adaptor complex small chainPFAMPF01217
  • ZETA-COAT PROTEINPantherPTHR11043
  • Vesicle coat complex COPI, zeta subunitKOGKOG3343
  • SNARE-like superfamily proteinATAT4G08520
Glyma13g42480
  • RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)PFAMPF00076
  • RNA-BINDING PROTEINPantherPTHR10432
  • RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1KOGKOG4205
  • nucleic acid bindingPFAMPF00076
  • RNA-BINDING PROTEINPantherPTHR10432
  • RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1KOGKOG4205
  • RNA-binding (RRM/RBD/RNP motifs) family proteinATAT1G17640
Glyma13g42485
Glyma13g42490
  • SMAD/FHA domain-containing protein ATAT3G13780
Glyma13g42500
  • NAD binding domain of 6-phosphogluconate dehydrogenasePFAMPF03446
  • 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATEDPantherPTHR22981
  • Predicted dehydrogenaseKOGKOG0409
  • phosphogluconate dehydrogenase (decarboxylating) activityPFAMPF03446
  • NADP oxidoreductase coenzyme F420-dependentPFAMPF03807
  • oxidoreductase activityPantherPTHR22981
  • Predicted dehydrogenaseKOGKOG0409
  • glyoxylate reductase 2ATAT1G17650
Glyma13g42520
  • Nucleosome assembly protein (NAP)PFAMPF00956
  • NUCLEOSOME ASSEMBLY PROTEINPantherPTHR11875
  • Nucleosome assembly protein NAP-1KOGKOG1507
  • nucleosome assemblyPFAMPF00956
  • nucleosome assemblyPantherPTHR11875
  • Nucleosome assembly protein NAP-1KOGKOG1507
  • nucleosome assembly protein 1;3ATAT5G56950
Glyma13g42530
  • Glycosyl hydrolases family 32 C terminalPFAMPF08244
  • Beta-fructofuranosidase (invertase)KOGKOG0228
  • Beta-fructofuranosidase.EC3.2.1.26
  • E3.2.1.26, sacA; beta-fructofuranosidase [EC:3.2.1.26 ] [COG:COG1621 ] [GO:0004564 ]KOK01193
  • Activity=beta-fructofuranosidase; Pathway=sucrose degradation IIISoyCycPWY-621
  • Activity=beta-fructofuranosidase; Pathway=sucrose degradation IIISoyCycPWY-621
  • Activity=beta-fructofuranosidase; Pathway=sucrose degradation ISoyCycSUCUTIL-PWY
  • Activity=beta-fructofuranosidase; Pathway=fructan biosynthesisSoyCycPWY-822
  • Glycosyl hydrolases family 32 N-terminal domainPFAMPF00251
  • Glycosyl hydrolases family 32 C terminalPFAMPF08244
  • Beta-fructofuranosidase (invertase)KOGKOG0228
  • β-fructofuranosidaseEC3.2.1.26
  • beta-fructofuranosidase [EC:3.2.1.26]KOK01193
  • Glycosyl hydrolases family 32 proteinATAT3G13790
Glyma13g42540
Glyma13g42550






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo