Genes Covered By A Chromosome Alteration FN300088.04.01.M4.1

Gene Name

Gene Annotation

Glyma03g27295

Glyma03g27300

phytochrome kinase substrate 4 AT AT5G04190

Glyma03g27311

Domain of unknown function (DUF309) PFAM PF03745
AT AT2G41120

Glyma03g27320

AT AT2G41120

Glyma03g27331

PQ loop repeat PFAM PF04193
gb def: ENSANGP00000013231 (Fragment) Panther PTHR14856:SF7
PQ-loop repeat family protein / transmembrane family protein AT AT2G41050
Predicted membrane protein KOG KOG2913

Glyma03g27340

AQUAPORIN TRANSPORTER Panther PTHR19139
Aquaporin (major intrinsic protein family) KOG KOG0223
aquaporin SIP KO K09875
transport PFAM PF00230
transport Panther PTHR19139
Aquaporin (major intrinsic protein family) KOG KOG0223
aquaporin SIP KO K09875
small and basic intrinsic protein 2;1 AT AT3G56950

Glyma03g27360

Enoyl-CoA hydratase/isomerase family PFAM PF00378
ENOYL-COA HYDRATASE-RELATED Panther PTHR11941
Enoyl-CoA isomerase KOG KOG1681
E5.3.3.-; [EC:5.3.3.- ] KO K01828
catalytic activity PFAM PF00378
ENOYL-COA HYDRATASE-RELATED Panther PTHR11941
Enoyl-CoA isomerase KOG KOG1681
Transposing C==C bonds. EC 5.3.3.-
delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase [EC:5.3.3.-] KO K12663
delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 AT AT5G43280

Glyma03g27380

Rubrerythrin PFAM PF02915
magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase EC 1.14.13.81
E1.14.13.81, acsF, chlE; magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase [EC:1.14.13.81 ] [COG:COG1032 ] KO K04035
Activity=magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase; Pathway=chlorophyllide a biosynthesis I SoyCyc CHLOROPHYLL-SYN
chloroplast GO GO:0009507
magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity GO GO:0048529
chloroplast inner membrane GO GO:0009706
chloroplast envelope GO GO:0009941
chloroplast thylakoid membrane GO GO:0009535
DNA binding GO GO:0003677
oxidation-reduction process GO GO:0055114
photosynthesis GO GO:0015979
chlorophyll biosynthetic process GO GO:0015995
Activity=magnesium-protoporphyrin IX monomethyl ester oxidative cyclase; Pathway=chlorophyllide a biosynthesis I SoyCyc CHLOROPHYLL-SYN
metal ion binding PFAM PF02915
magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase EC 1.14.13.81
magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase [EC:1.14.13.81] KO K04035
dicarboxylate diiron protein, putative (Crd1) AT AT3G56940

Glyma03g27400

Glyma03g27410

DHHC zinc finger domain PFAM PF01529
ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN Panther PTHR22883
DHHC-type Zn-finger proteins KOG KOG1311
zinc ion binding PFAM PF01529
ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN Panther PTHR22883
DHHC-type Zn-finger proteins KOG KOG1311
DHHC-type zinc finger family protein AT AT3G56930

Glyma03g27420

DHHC zinc finger domain PFAM PF01529
ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN Panther PTHR22883
DHHC-type Zn-finger proteins KOG KOG1311
zinc ion binding PFAM PF01529
ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN Panther PTHR22883
DHHC-type Zn-finger proteins KOG KOG1311
DHHC-type zinc finger family protein AT AT5G05070

Glyma03g27441

histone binding PFAM PF02182
histone lysine methylation PFAM PF05033
protein binding PFAM PF00856
SET DOMAIN PROTEINS Panther PTHR22884
Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing KOG KOG1082
SU(VAR)3-9 homolog 3 AT AT1G73100

Glyma03g27460

Alpha-L-arabinofuranosidase C-terminus PFAM PF06964
Activity=alpha-N-arabinofuranosidase; Pathway=starch degradation SoyCyc PWY-842
Activity=alpha-N-arabinofuranosidase; Pathway=Glycogen degradation I SoyCyc GLYCOCAT-PWY
hydrolase activity, acting on glycosyl bonds PFAM PF02018
L-arabinose metabolic process PFAM PF06964
alpha-L-arabinofuranosidase 1 AT AT3G10740

Glyma03g27470

Alpha-L-arabinofuranosidase C-terminus PFAM PF06964
L-arabinose metabolic process PFAM PF06964
alpha-L-arabinofuranosidase 1 AT AT3G10740

Glyma03g27490

Alpha-L-arabinofuranosidase C-terminus PFAM PF06964
Activity=alpha-N-arabinofuranosidase; Pathway=starch degradation SoyCyc PWY-842
Activity=alpha-N-arabinofuranosidase; Pathway=Glycogen degradation I SoyCyc GLYCOCAT-PWY
L-arabinose metabolic process PFAM PF06964
alpha-L-arabinofuranosidase 1 AT AT3G10740

Glyma03g27500

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 24-RELATED Panther PTHR22766
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 6/12/38 Panther PTHR14155
Zinc finger, C3HC4 type (RING finger) family protein AT AT1G68070
CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR-RELATED Panther PTHR11203:SF8

Glyma03g27510

Glyma03g27520

WD domain, G-beta repeat PFAM PF00400
ALADIN/ADRACALIN/AAAS Panther PTHR14494
WD40 repeat protein KOG KOG2139
WD domain, G-beta repeat PFAM PF00400
ALADIN/ADRACALIN/AAAS Panther PTHR14494
WD40 repeat protein KOG KOG2139
aladin KO K14320
Transducin/WD40 repeat-like superfamily protein AT AT3G56900

Glyma03g27531

Plant organelle RNA recognition domain PFAM PF11955
Ubiquitin carboxyl-terminal hydrolase family protein AT AT5G45790

Glyma03g27541

integral to membrane PFAM PF04117
integral to membrane Panther PTHR11266
Peroxisomal membrane protein MPV17 and related proteins KOG KOG1944
Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein AT AT5G19750

Glyma03g27551

AT AT3G54000

Glyma03g27560

VQ motif PFAM PF05678
VQ motif PFAM PF05678
calmodulin (CAM)-binding protein of 25 kDa AT AT2G41010

Glyma03g27570

UBA/TS-N domain PFAM PF00627
NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED Panther PTHR21713
Transcription factor containing NAC and TS-N domains KOG KOG2239
EGD2; transcription factor homologous to NACalpha-BTF3 [COG:COG1308 ] KO K03626
NAC domain PFAM PF01849
protein binding PFAM PF00627
NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED Panther PTHR21713
Transcription factor containing NAC and TS-N domains KOG KOG2239
nascent polypeptide-associated complex subunit alpha KO K03626
Nascent polypeptide-associated complex (NAC), alpha subunit family protein AT AT3G12390

Glyma03g27580

UBA/TS-N domain PFAM PF00627
NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED Panther PTHR21713
Transcription factor containing NAC and TS-N domains KOG KOG2239
EGD2; transcription factor homologous to NACalpha-BTF3 [COG:COG1308 ] KO K03626
NAC domain PFAM PF01849
protein binding PFAM PF00627
NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED Panther PTHR21713
Transcription factor containing NAC and TS-N domains KOG KOG2239
Nascent polypeptide-associated complex (NAC), alpha subunit family protein AT AT3G12390

Glyma03g27590

SUPPRESSOR OF TY 6 (SPT6)-RELATED Panther PTHR10145
Transcription elongation factor SPT6 KOG KOG1856
SUPPRESSOR OF TY 6 (SPT6)-RELATED Panther PTHR10145
Transcription elongation factor SPT6 KOG KOG1856
transcription elongation factor SPT6 KO K11292
global transcription factor group B1 AT AT1G65440

Glyma03g27600

4-alpha-glucanotransferase PFAM PF02446
4-alpha-glucanotransferase. EC 2.4.1.25
E2.4.1.25, malQ; 4-alpha-glucanotransferase [EC:2.4.1.25 ] [COG:COG1640 ] [GO:0004134 ] KO K00705
Activity=4-alpha-glucanotransferase; Pathway=starch degradation I SoyCyc PWY-842
Activity=4-alpha-glucanotransferase; Pathway=Glycogen degradation II SoyCyc PWY-5941
Activity=4-alpha-glucanotransferase; Pathway=starch degradation SoyCyc PWY-842
Activity=4-alpha-glucanotransferase; Pathway=Glycogen degradation I SoyCyc GLYCOCAT-PWY
catalytic activity PFAM PF00686
4-alpha-glucanotransferase activity PFAM PF02446
4-α-glucanotransferase EC 2.4.1.25
4-alpha-glucanotransferase [EC:2.4.1.25] KO K00705
disproportionating enzyme 2 AT AT2G40840

Glyma03g27610

Phosphatidylinositol 3- and 4-kinase PFAM PF00454
gb def: T17H3.7 Panther PTHR15245:SF11
Phosphatidylinositol 4-kinase KOG KOG2381
phosphotransferase activity, alcohol group as acceptor PFAM PF00454
gb def: T17H3.7 Panther PTHR15245:SF11
Phosphatidylinositol 4-kinase KOG KOG2381
phosphoinositide 4-kinase gamma 1 AT AT2G40850

Glyma03g27620

Prenyltransferase and squalene oxidase repeat PFAM PF00432
Oxidosqualene-lanosterol cyclase and related proteins KOG KOG0497
Activity=arabidiol synthase, oxidosqualene_cyclase, β-amyrin_synthase, Cycloartenol synthase, beta-amyrin synthase; Pathway=plant sterol biosynthesis SoyCyc PWY-2541
Activity=arabidiol synthase, oxidosqualene_cyclase, β-amyrin_synthase, Cycloartenol synthase, beta-amyrin synthase; Pathway=lanosterol biosynthesis SoyCyc PWY-6132
Activity=arabidiol synthase, oxidosqualene_cyclase, β-amyrin_synthase, Cycloartenol synthase, beta-amyrin synthase; Pathway=cholesterol biosynthesis I SoyCyc PWY66-341
Activity=arabidiol synthase, oxidosqualene_cyclase, β-amyrin_synthase, Cycloartenol synthase, beta-amyrin synthase; Pathway=lupeol biosynthesis SoyCyc PWY-112
Activity=arabidiol synthase, oxidosqualene_cyclase, β-amyrin_synthase, Cycloartenol synthase, beta-amyrin synthase; Pathway=soybean saponin I biosynthesis SoyCyc PWY-5203
Activity=arabidiol synthase, oxidosqualene_cyclase, β-amyrin_synthase, Cycloartenol synthase, beta-amyrin synthase; Pathway=α-amyrin biosynthesis SoyCyc PWY-5377
Activity=arabidiol synthase; Pathway=marneral biosynthesis SoyCyc PWY-6005
Activity=arabidiol synthase; Pathway=lupeol biosynthesis SoyCyc PWY-112
Activity=arabidiol synthase; Pathway=alpha-amyrin biosynthesis SoyCyc PWY-5377
Activity=arabidiol synthase; Pathway=saponin biosynthesis I SoyCyc PWY-5203
Activity=arabidiol synthase; Pathway=plant sterol biosynthesis SoyCyc PWY-2541
catalytic activity PFAM PF00432
Oxidosqualene-lanosterol cyclase and related proteins KOG KOG0497
Terpenoid cyclases family protein AT AT1G78950

Glyma03g27641

AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT AT5G62310

Glyma03g27661

catalytic activity PFAM PF00432
Oxidosqualene-lanosterol cyclase and related proteins KOG KOG0497
camelliol C synthase 1 AT AT1G78955

Glyma03g27681

lupeol synthase 2 AT AT1G78960

Glyma03g27701

PIF1 helicase PFAM PF05970
HELICASE-RELATED Panther PTHR10492
DNA helicase PIF1/RRM3 KOG KOG0987
PIF1 helicase AT AT3G51690

Glyma03g27721

RabGAP/TBC domain-containing protein AT AT5G52580

Glyma03g27740

Cytochrome P450 PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
Cytochrome P450 CYP2 subfamily KOG KOG0156
Acting on paired donors, with incorporation or reduction of EC 1.14.-.-
p-coumarate 3-hydroxylase [EC:1.14.13.-] KO K09754
Activity=monooxygenase, p-coumarate 3-hydroxylase; Pathway=luteolin biosynthesis SoyCyc PWY-5060
Activity=monooxygenase, p-coumarate 3-hydroxylase; Pathway=flavonol biosynthesis SoyCyc PWY-3101
Activity=monooxygenase, p-coumarate 3-hydroxylase; Pathway=leucodelphinidin biosynthesis SoyCyc PWY-5152
Activity=monooxygenase, p-coumarate 3-hydroxylase; Pathway=leucopelargonidin and leucocyanidin biosynthesis SoyCyc PWY1F-823
plasma membrane GO GO:0005886
endoplasmic reticulum GO GO:0005783
coumarin biosynthetic process GO GO:0009805
mitochondrion GO GO:0005739
flavonoid biosynthetic process GO GO:0009813
lignin biosynthetic process GO GO:0009809
p-coumarate 3-hydroxylase activity GO GO:0046409
microsome GO GO:0005792
phenylpropanoid biosynthetic process GO GO:0009699
monooxygenase activity GO GO:0004497
Activity=monooxygenase; Pathway=suberin biosynthesis SoyCyc PWY-1121
Activity=monooxygenase; Pathway=brassinosteroid biosynthesis II SoyCyc PWY-2582
Activity=monooxygenase; Pathway=phenylpropanoid biosynthesis SoyCyc PWY-361
Activity=monooxygenase; Pathway=rosmarinic acid biosynthesis I SoyCyc PWY-5048
Activity=monooxygenase; Pathway=brassinosteroid biosynthesis I SoyCyc PWY-699
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
Cytochrome P450 CYP2 subfamily KOG KOG0156
With NADH or NADPH as one donor, and incorporation of one atom EC 1.14.13.-
p-coumarate 3-hydroxylase [EC:1.14.13.-] KO K09754
cytochrome P450, family 98, subfamily A, polypeptide 3 AT AT2G40890

Glyma03g27750

Tetratricopeptide repeat PFAM PF07719
FK506 BINDING PROTEIN Panther PTHR10516
FKBP-type peptidyl-prolyl cis-trans isomerase KOG KOG0543
protein folding PFAM PF00254
protein binding PFAM PF00515
Tetratricopeptide repeat PFAM PF07719
FK506 BINDING PROTEIN Panther PTHR10516
FKBP-type peptidyl-prolyl cis-trans isomerase KOG KOG0543
FKBP-type peptidyl-prolyl cis-trans isomerase family protein AT AT5G48570

Glyma03g27760

Integral membrane protein DUF6 PFAM PF00892
membrane PFAM PF00892
nodulin MtN21 /EamA-like transporter family protein AT AT5G07050

Glyma03g27770

Cytochrome P450 PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
Cytochrome P450 CYP4/CYP19/CYP26 subfamilies KOG KOG0157
E1.14.-.-; [EC:1.14.-.- ] [COG:COG2124 ] KO K00517
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
Cytochrome P450 CYP4/CYP19/CYP26 subfamilies KOG KOG0157
Acting on paired donors, with incorporation or reduction of EC 1.14.-.-
beta-carotene 15,15'-monooxygenase [EC:1.14.99.36] KO K00517
cytochrome P450, family 94, subfamily D, polypeptide 2 AT AT3G56630

Glyma03g27790

Ubiquitin carboxyl-terminal hydrolase PFAM PF00443
UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED Panther PTHR10420
Ubiquitin C-terminal hydrolase KOG KOG1870
ubiquitin thiolesterase activity PFAM PF06337
ubiquitin thiolesterase activity PFAM PF00443
UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED Panther PTHR10420
Ubiquitin C-terminal hydrolase KOG KOG1870
ubiquitin thiolesterase EC 3.1.2.15
ubiquitin carboxyl-terminal hydrolase 4/11/15 [EC:3.1.2.15] KO K11835
ubiquitin-specific protease 5 AT AT2G40930

Glyma03g27800

POT family PFAM PF00854
OLIGOPEPTIDE TRANSPORTER-RELATED Panther PTHR11654
H+/oligopeptide symporter KOG KOG1237
oligopeptide transport PFAM PF00854
OLIGOPEPTIDE TRANSPORTER-RELATED Panther PTHR11654
H+/oligopeptide symporter KOG KOG1237
Major facilitator superfamily protein AT AT1G68570

Glyma03g27815

Regulator of Vps4 activity in the MVB pathway PFAM PF03398
UNCHARACTERIZED DUF292 Panther PTHR12161
Regulator of Vps4 activity in the MVB pathway protein AT AT2G14830

Glyma03g27830

POT family PFAM PF00854
OLIGOPEPTIDE TRANSPORTER-RELATED Panther PTHR11654
H+/oligopeptide symporter KOG KOG1237
Major Facilitator Superfamily PFAM PF07690
oligopeptide transport PFAM PF00854
OLIGOPEPTIDE TRANSPORTER-RELATED Panther PTHR11654
H+/oligopeptide symporter KOG KOG1237
Major facilitator superfamily protein AT AT1G68570

Glyma03g27840

POT family PFAM PF00854
OLIGOPEPTIDE TRANSPORTER-RELATED Panther PTHR11654
H+/oligopeptide symporter KOG KOG1237
oligopeptide transport PFAM PF00854
OLIGOPEPTIDE TRANSPORTER-RELATED Panther PTHR11654
H+/oligopeptide symporter KOG KOG1237
Major facilitator superfamily protein AT AT1G68570

Glyma03g27850

oxygen evolving complex PFAM PF01789
Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein AT AT3G56650

Glyma03g27865

protein dimerization activity PFAM PF00170
Basic region leucine zipper PFAM PF07716
CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED Panther PTHR22952
Basic-leucine zipper (bZIP) transcription factor family protein AT AT2G40950

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