Genes Covered By A Chromosome Alteration FN300076.01.01.M4.4

Gene Name

Gene Annotation

Glyma16g00200

Ribonucleases P/MRP protein subunit POP1 PFAM PF06978
tRNA 5'-leader removal PFAM PF06978
RIBONUCLEASE P/MRP SUBUNIT Panther PTHR22731
ribonuclease Ps AT AT2G47300

Glyma16g00210

SUBGROUP I AMINOTRANSFERASE RELATED Panther PTHR11751
Methionine S-methyltransferase. EC 2.1.1.12
methionine S-methyltransferase [EC:2.1.1.12] KO K08247
Activity=S-adenosylmethionine-dependent methyltransferase; Pathway=S-methylmethionine cycle SoyCyc PWY-5441
methyltransferase activity PFAM PF05175
protein methyltransferase activity PFAM PF06325
transferase activity, transferring nitrogenous groups PFAM PF00155
SUBGROUP I AMINOTRANSFERASE RELATED Panther PTHR11751
methionine S-methyltransferase EC 2.1.1.12
methionine S-methyltransferase [EC:2.1.1.12] KO K08247
methionine S-methyltransferase AT AT5G49810

Glyma16g00220

Auxin response factor PFAM PF06507
regulation of transcription, DNA-dependent PFAM PF02362
response to hormone stimulus PFAM PF06507
nucleus PFAM PF02309
auxin response factor KO K14486
auxin response factor 1 AT AT1G59750

Glyma16g00240

Lsm interaction motif PFAM PF05391
RIBONUCLEOPROTEIN-RELATED Panther PTHR23269
RNA-binding protein SART3 (RRM superfamily) KOG KOG0128
nucleic acid binding PFAM PF00076
Lsm interaction motif PFAM PF05391
RIBONUCLEOPROTEIN-RELATED Panther PTHR23269
RNA-binding protein SART3 (RRM superfamily) KOG KOG0128
EMBRYO DEFECTIVE 140 AT AT4G24270

Glyma16g00250

Glyma16g00260

Domain of unknown function, DUF266 PFAM PF03267
membrane PFAM PF02485
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein AT AT1G10280

Glyma16g00270

Glyma16g00280

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
glutamine-rich protein 23 AT AT1G10270

Glyma16g00291

Protein of unknown function (DUF707) PFAM PF05212
Protein of unknown function (DUF707) AT AT4G18530

Glyma16g00300

Protein tyrosine kinase PFAM PF07714
MAPKK-RELATED SERINE/THREONINE PROTEIN KINASES Panther PTHR22986
MEKK and related serine/threonine protein kinases KOG KOG0198
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
MAPKK-RELATED SERINE/THREONINE PROTEIN KINASES Panther PTHR22986
MEKK and related serine/threonine protein kinases KOG KOG0198
NPK1-related protein kinase 1 AT AT1G09000

Glyma16g00310

AT AT1G57680

Glyma16g00315

Glyma16g00320

Protein kinase domain PFAM PF00069
CDC2-RELATED KINASE Panther PTHR11295
Cdc2-related protein kinase KOG KOG0600
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
CDC2-RELATED KINASE Panther PTHR11295
Cdc2-related protein kinase KOG KOG0600
Protein kinase superfamily protein AT AT1G09600

Glyma16g00330

Protein of unknown function (DUF579) PFAM PF04669
Protein of unknown function (DUF579) PFAM PF04669
Protein of unknown function (DUF579) AT AT1G09610

Glyma16g00340

Miro-like protein PFAM PF08477
RAS-RELATED GTPASE Panther PTHR11708
GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins KOG KOG0084
GTP-binding ADP-ribosylation factor Arf6 (dArf3) KOG KOG0071
Rab family, other KO K07976
response to cadmium ion GO GO:0046686
membrane GO GO:0016020
vacuole GO GO:0005773
myosin XI tail binding GO GO:0080115
GTP-dependent protein binding GO GO:0030742
plasma membrane GO GO:0005886
protein transport GO GO:0015031
GTP binding GO GO:0005525
small GTPase mediated signal transduction GO GO:0007264
trans-Golgi network membrane GO GO:0032588
ER to Golgi vesicle-mediated transport GO GO:0006888
Golgi membrane GO GO:0000139
protein binding GO GO:0005515
GTP binding PFAM PF00025
Ras family PFAM PF00071
Miro-like protein PFAM PF08477
PFAM PF04670
Signal recognition particle receptor beta subunit PFAM PF09439
GTP binding PFAM PF00009
RAS-RELATED GTPASE Panther PTHR11708
GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins KOG KOG0084
Rab family, other KO K07976
Ras-related small GTP-binding family protein AT AT3G11730
GTP-binding ADP-ribosylation factor Arf6 (dArf3) KOG KOG0071

Glyma16g00350

Miro-like protein PFAM PF08477
RAS-RELATED GTPASE Panther PTHR11708
GTPase Rab11/YPT3, small G protein superfamily KOG KOG0087
Rab family, other KO K07976
cell plate GO GO:0009504
endosome GO GO:0005768
cytokinesis GO GO:0000910
plasma membrane GO GO:0005886
GTP binding GO GO:0005525
GTP binding PFAM PF00025
Ras family PFAM PF00071
Miro-like protein PFAM PF08477
GTP binding PFAM PF00009
RAS-RELATED GTPASE Panther PTHR11708
GTPase Rab11/YPT3, small G protein superfamily KOG KOG0087
Rab family, other KO K07976
RAB GTPase 11C AT AT1G09630

Glyma16g00360

Elongation factor 1 gamma, conserved domain PFAM PF00647
GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING Panther PTHR11260
Translation elongation factor EF-1 gamma KOG KOG1627
protein binding PFAM PF02798
Glutathione S-transferase, C-terminal domain PFAM PF00043
eukaryotic translation elongation factor 1 complex PFAM PF00647
GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING Panther PTHR11260
Translation elongation factor EF-1 gamma KOG KOG1627
Translation elongation factor EF1B, gamma chain AT AT1G09640

Glyma16g00366

AT AT1G09645

Glyma16g00373

Glyma16g00380

RNA-BINDING PROTEIN RELATED Panther PTHR11208
RNA-binding protein Sam68 and related KH domain proteins KOG KOG1588
RNA-BINDING PROTEIN RELATED Panther PTHR11208
RNA-binding protein Sam68 and related KH domain proteins KOG KOG1588
RNA-binding KH domain-containing protein AT AT1G09660

Glyma16g00390

RNA recognition motif 2 PFAM PF04059
UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN Panther PTHR13112
Smg-4/UPF3 family PFAM PF03467
UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN Panther PTHR13112
Smg-4/UPF3 family protein AT AT1G33980

Glyma16g00400

Protein kinase domain PFAM PF00069
CDC2-RELATED KINASE Panther PTHR11295
Glycogen synthase kinase-3 KOG KOG0658
E2.7.1.-; [EC:2.7.1.- ] [COG:COG0515 COG1493 ] KO K00924
cytosol GO GO:0005829
response to salt stress GO GO:0009651
hyperosmotic response GO GO:0006972
protein phosphorylation GO GO:0006468
plasma membrane GO GO:0005886
ATP binding GO GO:0005524
protein serine/threonine kinase activity GO GO:0004674
protein kinase activity GO GO:0004672
protein binding GO GO:0005515
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
CDC2-RELATED KINASE Panther PTHR11295
Glycogen synthase kinase-3 KOG KOG0658
tau-protein kinase EC 2.7.11.26
glycogen synthase kinase 3 beta [EC:2.7.11.26] KO K03083
shaggy-like protein kinase 41 AT AT1G09840

Glyma16g00410

Hsp70 protein PFAM PF00012
HEAT SHOCK PROTEIN 70KDA Panther PTHR19375
Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily KOG KOG0102
TC.HSP70; heat shock protein 70, Hsp70 family [COG:COG0443 ] [TC:1.A.33 ] KO K03283
mitochondrion GO GO:0005739
ATP binding GO GO:0005524
response to cold GO GO:0009409
nucleus GO GO:0005634
protein binding GO GO:0005515
protein targeting to chloroplast GO GO:0045036
apoplast GO GO:0048046
thylakoid GO GO:0009579
response to cadmium ion GO GO:0046686
chloroplast stroma GO GO:0009570
chloroplast envelope GO GO:0009941
chloroplast GO GO:0009507
plastid stroma GO GO:0009532
response to heat GO GO:0009408
protein folding GO GO:0006457
Activity=ATPase; Pathway=salvage pathways of adenine, hypoxanthine, and their nucleosides SoyCyc SALVADEHYPOX-PWY
Activity=ATPase; Pathway=salvage pathways of purine nucleosides II plant SoyCyc PWY-5043
Hsp70 protein PFAM PF00012
PFAM PF06723
ATP binding Panther PTHR19375
Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily KOG KOG0102
heat shock 70kDa protein 1/8 KO K03283
chloroplast heat shock protein 70-2 AT AT5G49910

Glyma16g00420

PB1 domain PFAM PF00564
protein binding PFAM PF00564
Octicosapeptide/Phox/Bem1p family protein AT AT5G49920

Glyma16g00430

Glyma16g00440

MAC/Perforin domain PFAM PF01823
MAC/Perforin domain PFAM PF01823
MAC/Perforin domain-containing protein AT AT4G24290

Glyma16g00450

AT AT1G09812

Glyma16g00465

protein binding PFAM PF00439
FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS Panther PTHR22880
DNA-binding bromodomain-containing protein AT AT1G58025

Glyma16g00480

tRNA pseudouridine synthase PFAM PF01416
PSEUDOURIDYLATE SYNTHASE Panther PTHR11142
Predicted pseudouridylate synthase KOG KOG4393
tRNA-pseudouridine synthase I. EC 5.4.99.12
TRUA; tRNA pseudouridine synthase A [EC:4.2.1.70 ] [COG:COG0101 ] [GO:0004730 ] KO K06173
pseudouridine synthesis PFAM PF01416
pseudouridine synthesis Panther PTHR11142
Predicted pseudouridylate synthase KOG KOG4393
tRNA pseudouridine38-40 synthase EC 5.4.99.12
tRNA pseudouridine synthase A [EC:5.4.99.12] KO K06173
Pseudouridine synthase family protein AT AT1G09800

Glyma16g00490

YT521-B-like family PFAM PF04146
YTH (YT521-B HOMOLOGY) DOMAIN-CONTAINING Panther PTHR12357
YT521-B-like family PFAM PF04146
YTH (YT521-B HOMOLOGY) DOMAIN-CONTAINING Panther PTHR12357
evolutionarily conserved C-terminal region 11 AT AT1G09810

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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