Genes Covered By A Chromosome Alteration FN300039.02.01.M4.3

Gene Name

Gene Annotation

Glyma09g10985

AMP DEPENDENT LIGASE/SYNTHETASE Panther PTHR11968
OPC-8:0 CoA ligase1 AT AT1G20510

Glyma09g11111

transmembrane transporter activity PFAM PF00083
Major Facilitator Superfamily PFAM PF07690
PFAM PF06609
SUGAR TRANSPORTER Panther PTHR11600
Permease of the major facilitator superfamily KOG KOG0569
MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13 KO K08150
inositol transporter 2 AT AT1G30220

Glyma09g11235

SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Leucine-rich repeat (LRR) family protein AT AT2G15320

Glyma09g11360

Major Facilitator Superfamily PFAM PF07690
SUGAR TRANSPORTER Panther PTHR11600
Permease of the major facilitator superfamily KOG KOG0569
transmembrane transporter activity PFAM PF00083
Major Facilitator Superfamily PFAM PF07690
PFAM PF06609
SUGAR TRANSPORTER Panther PTHR11600
Permease of the major facilitator superfamily KOG KOG0569
MFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13 KO K08150
inositol transporter 2 AT AT1G30220

Glyma09g11411

cation binding PFAM PF00128
AMYLASE Panther PTHR10357
AT AT5G47020

Glyma09g11460

Photosystem I psaG / psaK PFAM PF01241
PSAK; photosystem I subunit X KO K02698
thylakoid GO GO:0009579
chloroplast GO GO:0009507
membrane GO GO:0016020
chloroplast thylakoid membrane GO GO:0009535
photosynthesis GO GO:0015979
photosystem I GO GO:0009522
molecular_function GO GO:0003674
photosystem I PFAM PF01241
photosystem I subunit K AT AT1G30380

Glyma09g11471

Protein of unknown function, DUF593 PFAM PF04576
Protein of unknown function, DUF593 AT AT5G57830

Glyma09g11480

Up-frameshift suppressor 2 PFAM PF04050
FAMILY NOT NAMED Panther PTHR12839
Nonsense-mediated mRNA decay 2 protein KOG KOG2051
RNA metabolic process PFAM PF02854
Up-frameshift suppressor 2 PFAM PF04050
NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 (UP-FRAMESHIFT SUPPRESSOR 2) Panther PTHR12839
Nonsense-mediated mRNA decay 2 protein KOG KOG2051
regulator of nonsense transcripts 2 KO K14327
binding;RNA binding AT AT2G39260

Glyma09g11500

Glyma09g11510

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Tetratricopeptide repeat (TPR)-like superfamily protein AT AT4G21300

Glyma09g11531

Plant neutral invertase PFAM PF04853
alkaline/neutral invertase AT AT5G22510

Glyma09g11551

sequence-specific DNA binding PFAM PF00319
Panther PTHR11945:SF9
MADS box transcription factor KOG KOG0014
AGAMOUS-like 38 AT AT1G65300

Glyma09g11570

Glyma09g11585

protein binding PFAM PF03031
NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED Panther PTHR12210
TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) KOG KOG1605
SCP1-like small phosphatase 4 AT AT5G46410

Glyma09g11600

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase PFAM PF02518
SENSOR HISTIDINE KINASE-RELATED Panther PTHR23283
G-protein coupled photoreceptor activity PFAM PF08446
protein binding PFAM PF01590
G-protein coupled photoreceptor activity PFAM PF00360
regulation of transcription, DNA-dependent PFAM PF00989
PFAM PF08448
two-component sensor activity PFAM PF00512
ATP binding PFAM PF02518
SENSOR HISTIDINE KINASE-RELATED Panther PTHR23283
phytochrome E KO K12123
phytochrome E AT AT4G18130

Glyma09g11615

AT AT2G28410

Glyma09g11630

RNA recognition motif 2 PFAM PF04059
RNA-BINDING PROTEIN Panther PTHR10432
Protein Mei2, essential for commitment to meiosis, and related proteins KOG KOG4660
nucleic acid binding PFAM PF00076
RNA recognition motif 2 PFAM PF04059
RNA-BINDING PROTEIN Panther PTHR10432
Protein Mei2, essential for commitment to meiosis, and related proteins KOG KOG4660
MEI2-like protein 5 AT AT1G29400

Glyma09g11650

AT AT1G67050

Glyma09g11663

BED zinc finger ;hAT family dimerisation domain AT AT3G42170

Glyma09g11676

X8 domain PFAM PF07983
Carbohydrate-binding X8 domain superfamily protein AT AT1G29380

Glyma09g11690

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR) superfamily protein AT AT1G19290

Glyma09g11705

zinc ion binding PFAM PF04434
FAR1-related sequence 5 AT AT4G38180

Glyma09g11720

TRAUB (NUC102) domain PFAM PF08164
FAMILY NOT NAMED Panther PTHR15565
Apoptosis antagonizing transcription factor/protein transport protein KOG KOG2773
nucleus PFAM PF08164
AATF PROTEIN (APOPTOSIS ANTAGONIZING TRANSCRIPTION FACTOR) Panther PTHR15565
Apoptosis antagonizing transcription factor/protein transport protein KOG KOG2773
rRNA processing protein-related AT AT5G61330

Glyma09g11730

AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED Panther PTHR23172
Auxilin-like protein and related proteins containing DnaJ domain KOG KOG0431
heat shock protein binding PFAM PF00226
AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED Panther PTHR23172
Auxilin-like protein and related proteins containing DnaJ domain KOG KOG0431
Chaperone DnaJ-domain superfamily protein AT AT1G30280

Glyma09g11740

mTERF PFAM PF02536
FAMILY NOT NAMED Panther PTHR13068
Mitochondrial transcription termination factor, mTERF KOG KOG1267
mTERF PFAM PF02536
CGI-12 PROTEIN-RELATED Panther PTHR13068
Mitochondrial transcription termination factor, mTERF KOG KOG1267
Mitochondrial transcription termination factor family protein AT AT2G34620

Glyma09g11770

NAF domain PFAM PF03822
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED Panther PTHR22982
Serine/threonine protein kinase KOG KOG0583
E2.7.1.-; [EC:2.7.1.- ] [COG:COG0515 COG1493 ] KO K00924
stomatal movement GO GO:0010118
response to water deprivation GO GO:0009414
response to nutrient GO GO:0007584
cytosol GO GO:0005829
plasma membrane GO GO:0005886
potassium ion import GO GO:0010107
cytoplasm GO GO:0005737
protein serine/threonine kinase activity GO GO:0004674
nucleus GO GO:0005634
kinase activity GO GO:0016301
protein binding GO GO:0005515
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
signal transduction PFAM PF03822
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED Panther PTHR22982
Serine/threonine protein kinase KOG KOG0583
Phosphotransferases with an alcohol group as acceptor. EC 2.7.1.-
phosphatidylinositol-4-phosphate 3-kinase [EC:2.7.1.154] KO K00924
CBL-interacting protein kinase 23 AT AT1G30270
SERINE/THREONINE PROTEIN KINASE Panther PTHR22971
Serine/threonine protein kinase KOG KOG0580
CBL-INTERACTING PROTEIN KINASE-RELATED Panther PTHR22982:SF45

Glyma09g11820

RNA POLYMERASE III (DNA DIRECTED), 39KD SUBUNIT-RELATED Panther PTHR12780
RNA polymerase III, subunit C34 KOG KOG3233
DNA-directed RNA polymerase activity PFAM PF05158
RNA POLYMERASE III (DNA DIRECTED), 39KD SUBUNIT-RELATED Panther PTHR12780
RNA polymerase III, subunit C34 KOG KOG3233
DNA binding;DNA-directed RNA polymerases AT AT5G23710

Glyma09g11825

Glyma09g11831

Glyma09g11835

thylakoid PFAM PF00223
photosystem I P700 chlorophyll a apoprotein A2 KO K02690
Photosystem I, PsaA/PsaB protein AT ATCG00340

Glyma09g11840

LEM3 (ligand-effect modulator 3) family / CDC50 family PFAM PF03381
CDC50-RELATED Panther PTHR10926
Cell cycle control protein KOG KOG2952
membrane PFAM PF03381
membrane Panther PTHR10926
Cell cycle control protein KOG KOG2952
LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein AT AT5G46150

Glyma09g11870

Protein of unknown function (DUF667) PFAM PF05018
ORF PROTEIN Panther PTHR12458
Transcription factor IIB KOG KOG3213
multicellular organismal development GO GO:0007275
cellular_component GO GO:0005575
catalytic step 2 spliceosome GO GO:0071013
precatalytic spliceosome GO GO:0071011
nuclear mRNA splicing, via spliceosome GO GO:0000398
dendrite morphogenesis GO GO:0048813
neuron development GO GO:0048666
muscle organ development GO GO:0007517
sequence-specific DNA binding transcription factor activity GO GO:0003700
regulation of transcription, DNA-dependent GO GO:0006355
nucleus GO GO:0005634
molecular_function GO GO:0003674
biological_process GO GO:0008150
Protein of unknown function (DUF667) PFAM PF05018
ORF PROTEIN Panther PTHR12458
Transcription factor IIB KOG KOG3213
AT AT3G12300

Glyma09g11883

apoptosis PFAM PF00931
NB-ARC domain-containing disease resistance protein AT AT3G14470

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD PFAM PF00160
CYCLOPHILIN Panther PTHR11071
U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase KOG KOG0879
Peptidylprolyl isomerase. EC 5.2.1.8
peptidylprolyl isomerase [EC:5.2.1.8] KO K01802
plasma membrane GO GO:0005886
vacuole GO GO:0005773
protein folding GO GO:0006457
peptidyl-prolyl cis-trans isomerase activity GO GO:0003755
protein folding PFAM PF00160
CYCLOPHILIN Panther PTHR11071
U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase KOG KOG0879
peptidylprolyl isomerase EC 5.2.1.8
peptidyl-prolyl isomerase H (cyclophilin H) [EC:5.2.1.8] KO K09567
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein AT AT2G38730

Glyma09g11970

Complex 1 protein (LYR family) PFAM PF05347
FAMILY NOT NAMED Panther PTHR12964
NADH-UBIQUINONE OXIDOREDUCTASE B14 SUBUNIT Panther PTHR12964
LYR family of Fe/S cluster biogenesis protein AT AT3G12260

Glyma09g11990

Glycosyl hydrolase family 79, N-terminal domain PFAM PF03662
HEPARANASE-RELATED Panther PTHR14363
membrane PFAM PF03662
membrane Panther PTHR14363
glucuronidase 3 AT AT5G34940

Glyma09g12000

Tetratricopeptide repeat PFAM PF07719
CHAPERONE BINDING PROTEIN Panther PTHR22904
Myosin assembly protein/sexual cycle protein and related proteins KOG KOG4151
protein binding PFAM PF00564
CHAPERONE BINDING PROTEIN Panther PTHR22904
Myosin assembly protein/sexual cycle protein and related proteins KOG KOG4151
Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT AT2G25290

Glyma09g12011

PIF1 helicase PFAM PF05970
HELICASE-RELATED Panther PTHR10492

Glyma09g12020

Plant mobile domain PFAM PF10536
OS-9-RELATED Panther PTHR15414
Glucosidase II beta subunit-like protein PFAM PF07915
protein OS-9 KO K10088
Glucosidase II beta subunit-like protein PFAM PF07915
OS-9-RELATED Panther PTHR15414
AT AT5G35080

Glyma09g12030

UBA/TS-N domain PFAM PF00627
FAMILY NOT NAMED Panther PTHR12948
Adaptor protein NUB1, contains UBA domain KOG KOG2561
protein binding PFAM PF00627
NEDD8 ULTIMATE BUSTER-1 (BS4 PROTEIN) Panther PTHR12948
Adaptor protein NUB1, contains UBA domain KOG KOG2561
ubiquitin-associated (UBA)/TS-N domain-containing protein AT AT2G12550

Glyma09g12040

AT AT2G12462

Glyma09g12050

Major Facilitator Superfamily PFAM PF07690
UNCHARACTERIZED NODULIN-LIKE PROTEIN Panther PTHR21576
Monocarboxylate transporter KOG KOG2504
Nodulin-like PFAM PF06813
UNCHARACTERIZED NODULIN-LIKE PROTEIN Panther PTHR21576
Monocarboxylate transporter KOG KOG2504
Major facilitator superfamily protein AT AT1G80530

Glyma09g12066

Glyma09g12083

ALADIN/ADRACALIN/AAAS Panther PTHR14494
Transducin/WD40 repeat-like superfamily protein AT AT3G56900

Glyma09g12100

serine-rich protein-related AT AT5G25280

Glyma09g12116

protein dimerization activity PFAM PF05699
GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN Panther PTHR11697
TTF-type zinc finger protein with HAT dimerisation domain AT AT1G19260

Glyma09g12132

Protein of unknown function (DUF506) PFAM PF04720
Protein of unknown function (DUF506) AT AT1G12030

Glyma09g12148

serine-rich protein-related AT AT5G11090

Glyma09g12164

Myb-like DNA-binding domain PFAM PF00249
MYB-RELATED Panther PTHR10641
myb domain protein 70 AT AT2G23290

Glyma09g12180

AT AT4G39630

Glyma09g12198

structural constituent of cell wall PFAM PF02095
EXTENSIN, PROLINE-RICH PROTEIN Panther PTHR23201

Glyma09g12216

endopeptidase inhibitor activity PFAM PF00197
Kunitz family trypsin and protease inhibitor protein AT AT1G17860

Glyma09g12234

Protein tyrosine kinase PFAM PF07714
protein phosphorylation PFAM PF00069
PAN-like domain PFAM PF08276
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding AT AT1G11300

Glyma09g12252

structural constituent of cell wall PFAM PF02095
EXTENSIN, PROLINE-RICH PROTEIN Panther PTHR23201

Glyma09g12270

serine hydroxymethyltransferase 7 AT AT1G36370

Glyma09g12286

Glyma09g12303

Domain of unknown function DUF21 PFAM PF01595
ANCIENT CONSERVED DOMAIN PROTEIN-RELATED Panther PTHR12064
CBS domain-containing protein with a domain of unknown function (DUF21) AT AT1G03270

Glyma09g12320

AT AT2G12400

Glyma09g12325

Glyma09g12330

PLATZ transcription factor PFAM PF04640
PLATZ transcription factor PFAM PF04640
PLATZ transcription factor family protein AT AT2G12646

Glyma09g12380

DIMETHYLANILINE MONOOXYGENASE Panther PTHR23023
flavin-containing monooxygenase activity PFAM PF00743
Pyridine nucleotide-disulphide oxidoreductase PFAM PF07992
DIMETHYLANILINE MONOOXYGENASE Panther PTHR23023
Flavin-containing monooxygenase KOG KOG1399
flavin-dependent monooxygenase 1 AT AT1G19250

Glyma09g12390

Methyltransferase domain PFAM PF08242
METHYLTRANSFERASE Panther PTHR10108
methyltransferase activity PFAM PF01209
methyltransferase activity PFAM PF08241
Methyltransferase domain PFAM PF08242
METHYLTRANSFERASE Panther PTHR10108
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein AT AT2G41040

Glyma09g12400

DIMETHYLANILINE MONOOXYGENASE Panther PTHR23023
flavin-containing monooxygenase activity PFAM PF00743
Pyridine nucleotide-disulphide oxidoreductase PFAM PF07992
DIMETHYLANILINE MONOOXYGENASE Panther PTHR23023
flavin-dependent monooxygenase 1 AT AT1G19250

Glyma09g12411

Glyma09g12420

Ribosomal protein S17 PFAM PF00366
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER Panther PTHR10744
40S ribosomal protein S11 KOG KOG1728
RP-S11e, RPS11; small subunit ribosomal protein S11e [GO:0005843 ] KO K02949
cell wall GO GO:0005618
cytosolic ribosome GO GO:0022626
membrane GO GO:0016020
embryo development ending in seed dormancy GO GO:0009793
cytosolic small ribosomal subunit GO GO:0022627
translation GO GO:0006412
structural constituent of ribosome GO GO:0003735
intracellular PFAM PF00366
intracellular Panther PTHR10744
40S ribosomal protein S11 KOG KOG1728
small subunit ribosomal protein S11e KO K02949
ribosomal protein S11-beta AT AT5G23740

Glyma09g12430

Ribosomal protein S17 PFAM PF00366
40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER Panther PTHR10744
40S ribosomal protein S11 KOG KOG1728
RP-S11e, RPS11; small subunit ribosomal protein S11e [GO:0005843 ] KO K02949
cell wall GO GO:0005618
cytosolic ribosome GO GO:0022626
membrane GO GO:0016020
embryo development ending in seed dormancy GO GO:0009793
cytosolic small ribosomal subunit GO GO:0022627
translation GO GO:0006412
structural constituent of ribosome GO GO:0003735
intracellular PFAM PF00366
intracellular Panther PTHR10744
40S ribosomal protein S11 KOG KOG1728
small subunit ribosomal protein S11e KO K02949
ribosomal protein S11-beta AT AT5G23740

Glyma09g12440

O-methyltransferase PFAM PF00891
O-METHYLTRANSFERASE Panther PTHR11746
Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases KOG KOG3178
protein dimerization activity PFAM PF08100
O-methyltransferase activity PFAM PF00891
O-METHYLTRANSFERASE Panther PTHR11746
Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases KOG KOG3178
O-methyltransferase family protein AT AT4G35160

Glyma09g12480

O-methyltransferase PFAM PF00891
O-METHYLTRANSFERASE Panther PTHR11746
Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases KOG KOG3178
protein dimerization activity PFAM PF08100
O-methyltransferase activity PFAM PF00891
O-METHYLTRANSFERASE Panther PTHR11746
Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases KOG KOG3178
O-methyltransferase family protein AT AT4G35150

Glyma09g12491

Glyma09g12500

Ribosomal L39 protein PFAM PF00832
RIBOSOMAL PROTEIN L39E Panther PTHR19970
60s ribosomal protein L39 KOG KOG0002
RP-L39e, RPL39; large subunit ribosomal protein L39e [GO:0005842 ] KO K02924
intracellular PFAM PF00832
intracellular Panther PTHR19970
60s ribosomal protein L39 KOG KOG0002
large subunit ribosomal protein L39e KO K02924
Ribosomal protein L39 family protein AT AT4G31985

Glyma09g12510

retinoblastoma-related 1 AT AT3G12280

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