Genes Covered By A Chromosome Alteration FN300034.01.01.M4.1

Gene Name

Gene Annotation

Glyma04g21680

Myb-like DNA-binding domain PFAM PF00249
Myb-like DNA-binding domain PFAM PF00249
Homeodomain-like superfamily protein AT AT2G03500

Glyma04g21753

protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Leucine-rich repeat protein kinase family protein AT AT2G26730

Glyma04g21826

FAMILY NOT NAMED Panther PTHR13681
Domain of unknown function (DUF1767) AT AT5G19950

Glyma04g21900

Snf7 PFAM PF03357
SNF7-RELATED Panther PTHR10476
Vacuolar sorting protein VPS24 KOG KOG3229
ESCRT III complex GO GO:0000815
vesicle-mediated transport GO GO:0016192
protein transport PFAM PF03357
SNF7-RELATED Panther PTHR10476
Vacuolar sorting protein VPS24 KOG KOG3229
SNF7 family protein AT AT5G22950

Glyma04g21910

Acyl-ACP thioesterase PFAM PF01643
Thiolester hydrolases. EC 3.1.2.-
fatty acyl-ACP thioesterase B [EC:3.1.2.14 3.1.2.-] KO K10781
Oleoyl-[acyl-carrier protein] hydrolase. EC 3.1.2.14
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=acyl-ACP thioesterase pathway SoyCyc PWY-5142
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=superpathway of fatty acid biosynthesis II (plant) SoyCyc PWY-5156
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=oleate biosynthesis I (plants) SoyCyc PWY-5147
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=palmitate biosynthesis II (bacteria and plants) SoyCyc PWY-5971
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=palmitoleate biosynthesis II SoyCyc PWY-5366
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=stearate biosynthesis II (plants) SoyCyc PWY-5989
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=oleate biosynthesis I plants SoyCyc PWY-5147
Activity=acyl-[acyl-carrier-protein] hydrolase; Pathway=superpathway of fatty acid biosynthesis II plant SoyCyc PWY-5156
thiolester hydrolase activity PFAM PF12590
fatty acid biosynthetic process PFAM PF01643
Thiolester hydrolases. EC 3.1.2.-
oleoyl-[acyl-carrier-protein] hydrolase EC 3.1.2.14
fatty acyl-ACP thioesterase B [EC:3.1.2.14 3.1.2.-] KO K10781
fatty acyl-ACP thioesterases B AT AT1G08510

Glyma04g22020

thylakoid PFAM PF00223
photosystem I P700 chlorophyll a apoprotein A1 KO K02689
Photosystem I, PsaA/PsaB protein AT ATCG00350

Glyma04g22130

Transferase family PFAM PF02458
transferase activity, transferring acyl groups other than amino-acyl groups PFAM PF02458
HXXXD-type acyl-transferase family protein AT AT1G03390

Glyma04g22140

bZIP transcription factor family protein AT AT1G77920

Glyma04g22152

plant U-box 13 AT AT3G46510

Glyma04g22164

nucleus PFAM PF01486
MADS BOX PROTEIN Panther PTHR11945
AGAMOUS-like 6 AT AT2G45650

Glyma04g22177

GLUTATHIONE-S-TRANSFERASE Panther PTHR11260:SF11
glutathione S-transferase TAU 8 AT AT3G09270

Glyma04g22190

X8 domain PFAM PF07983
hydrolase activity, hydrolyzing O-glycosyl compounds PFAM PF00332
X8 domain PFAM PF07983
O-Glycosyl hydrolases family 17 protein AT AT3G24330

Glyma04g22262

Protein of unknown function (DUF1630) PFAM PF07792
UNCHARACTERIZED Panther PTHR13677
Uncharacterized conserved protein KOG KOG2432
AT AT1G73930

Glyma04g22334

ATP-BINDING CASSETTE TRANSPORTERS 6,8,9 Panther PTHR19229:SF7
ABC2 homolog 7 AT AT3G47790

Glyma04g22407

TCP family transcription factor PFAM PF03634
TCP family transcription factor AT AT3G18550

Glyma04g22480

Glyma04g22520

Arabidopsis proteins of unknown function PFAM PF03005
TRICHOME BIREFRINGENCE-LIKE 27 AT AT1G70230

Glyma04g22655

Glyma04g22790

Glyma04g22801

AT AT3G25590

Glyma04g22810

Protein of unknown function (DUF1262) PFAM PF06880
Protein of unknown function (DUF1262) PFAM PF06880
Protein of unknown function (DUF1262) AT AT1G13520

Glyma04g22815

Glyma04g22820

Glyma04g23050

IMPORTIN (RAN-BINDING PROTEIN) Panther PTHR10997
IMPORTIN (RAN-BINDING PROTEIN) Panther PTHR10997
ARM repeat superfamily protein AT AT1G26170

Glyma04g23080

IMPORTIN-ALPHA RE-EXPORTER RELATED Panther PTHR10997:SF9
IMPORTIN-ALPHA RE-EXPORTER RELATED Panther PTHR10997:SF9
ARM repeat superfamily protein AT AT1G26170

Glyma04g23095

ARM repeat superfamily protein AT AT1G26170

Glyma04g23110

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). Panther PTHR22764
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). Panther PTHR22764
RING/U-box superfamily protein AT AT1G23980

Glyma04g23120

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER PROTEIN 24-RELATED Panther PTHR22766
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER CONTAINING PROTEIN Panther PTHR22937
AtL5 AT AT3G62690

Glyma04g23256

Glyma04g23393

PIF1 helicase PFAM PF05970
viral genome replication PFAM PF02689
HELICASE-RELATED Panther PTHR10492
PIF1 helicase AT AT3G51700

Glyma04g23530

Cellulose synthase PFAM PF03552
SUBFAMILY NOT NAMED Panther PTHR13301:SF1
Activity=1,4-beta-D-xylan synthase, cellulose synthase; Pathway=cellulose biosynthesis SoyCyc PWY-1001
Activity=1,4-beta-D-xylan synthase, cellulose synthase; Pathway=xylan biosynthesis SoyCyc PWY-5800
cell wall thickening GO GO:0052386
plant-type cell wall biogenesis GO GO:0009832
chloroplast GO GO:0009507
cellulose biosynthetic process GO GO:0030244
rhamnogalacturonan I side chain metabolic process GO GO:0010400
secondary cell wall biogenesis GO GO:0009834
plasma membrane GO GO:0005886
cellulose synthase activity GO GO:0016759
Activity=1,4-beta-D-xylan synthase; Pathway=xylan biosynthesis SoyCyc PWY-5800
Activity=1,4-beta-D-xylan synthase; Pathway=cellulose biosynthesis SoyCyc PWY-1001
cellulose synthase (UDP-forming) activity PFAM PF03552
SUBFAMILY NOT NAMED Panther PTHR13301:SF1
cellulose synthase (UDP-forming) EC 2.4.1.12
cellulose synthase A [EC:2.4.1.12] KO K10999
Cellulose synthase family protein AT AT5G17420

Glyma04g23536

Glyma04g23543

Glyma04g23550

Translation initiation factor IF-3, C-terminal domain PFAM PF00707
TRANSLATION INITIATION FACTOR IF-3 Panther PTHR10938
IF-3, infC; translation initiation factor IF-3 [COG:COG0290 ] [GO:0003743 ] KO K02520
translation initiation factor activity PFAM PF05198
translation initiation factor activity PFAM PF00707
translation initiation factor activity Panther PTHR10938
translation initiation factor IF-3 KO K02520
Translation initiation factor 3 protein AT AT2G24060

Glyma04g23560

MA3 domain PFAM PF02847
EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA Panther PTHR23253
Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) KOG KOG0401
RNA metabolic process PFAM PF02854
MA3 domain PFAM PF02847
EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA Panther PTHR23253
Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G) KOG KOG0401
translation initiation factor eIF-4F KO K03260
MIF4G domain-containing protein / MA3 domain-containing protein AT AT5G57870

Glyma04g23760

IQ calmodulin-binding motif PFAM PF00612
MYOSIN-VII Panther PTHR13140:SF37
protein binding PFAM PF00612
MYOSIN-VII Panther PTHR13140:SF37
IQ-domain 11 AT AT5G13460

Glyma04g23780

Methyl-CpG binding domain PFAM PF01429
nucleus PFAM PF01429
methyl-CPG-binding domain 10 AT AT1G15340

Glyma04g23980

Methyl-CpG binding domain PFAM PF01429
nucleus PFAM PF01429
methyl-CPG-binding domain 10 AT AT1G15340

Glyma04g23990

AT AT5G53650

Glyma04g23996

hydrolase activity PFAM PF00383
CYTIDINE DEAMINASE Panther PTHR11644
cytidine deaminase 1 AT AT2G19570

Glyma04g24003

double-stranded RNA binding PFAM PF00035
dsRNA-binding protein 2 AT AT2G28380

Glyma04g24010

AP2 domain PFAM PF00847
sequence-specific DNA binding transcription factor activity PFAM PF00847
Integrase-type DNA-binding superfamily protein AT AT1G79700

Glyma04g24040

Family of unknown function (DUF566) PFAM PF04484
Family of unknown function (DUF566) PFAM PF04484
Family of unknown function (DUF566) AT AT4G30710

Glyma04g24047

Glyma04g24054

Pyridine nucleotide-disulphide oxidoreductase PFAM PF07992
flavin adenine dinucleotide binding PFAM PF00070
HI0933-like protein PFAM PF03486
monooxygenase activity PFAM PF01494
DIMETHYLANILINE MONOOXYGENASE Panther PTHR23023
FAD/NAD(P)-binding oxidoreductase family protein AT AT4G30720

Glyma04g24062

Glyma04g24070

Ubiquitin family PFAM PF00240
UV EXCISION REPAIR PROTEIN RAD23 Panther PTHR10621
RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B KOG KOG4495
Ubiquitin-2 like Rad60 SUMO-like PFAM PF11976
protein binding PFAM PF00240
UV EXCISION REPAIR PROTEIN RAD23 Panther PTHR10621
RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B KOG KOG4495
Ubiquitin-like superfamily protein AT AT5G57860

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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