Genes Covered By A Chromosome Alteration FN300026.02.01.M4.1

Gene Name

Gene Annotation

Glyma04g09400

SUCROSE TRANSPORT PROTEIN Panther PTHR19432
SUCROSE TRANSPORT PROTEIN Panther PTHR19432
sucrose transporter 4 AT AT1G09960

Glyma04g09410

MatE PFAM PF01554
MULTIDRUG RESISTANCE PUMP Panther PTHR11206
Uncharacterized membrane protein, predicted efflux pump KOG KOG1347
antiporter activity PFAM PF01554
antiporter activity Panther PTHR11206
Uncharacterized membrane protein, predicted efflux pump KOG KOG1347
MATE efflux family protein AT AT1G58340

Glyma04g09431

Glyma04g09450

FAMILY NOT NAMED Panther PTHR19861
FAMILY NOT NAMED Panther PTHR19861
Transducin/WD40 repeat-like superfamily protein AT AT5G14530

Glyma04g09460

Major Facilitator Superfamily PFAM PF07690
SUCROSE TRANSPORT PROTEIN Panther PTHR19432
Sucrose transporter and related proteins KOG KOG0637
transmembrane transport PFAM PF07690
SUCROSE TRANSPORT PROTEIN Panther PTHR19432
Sucrose transporter and related proteins KOG KOG0637
sucrose transporter 4 AT AT1G09960
transmembrane transporter activity PFAM PF00083

Glyma04g09470

Glycosyltransferase family 43 PFAM PF03360
BETA-1,3-GLUCURONYLTRANSFERASE Panther PTHR10896
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity PFAM PF03360
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity Panther PTHR10896
Nucleotide-diphospho-sugar transferases superfamily protein AT AT1G27600

Glyma04g09485

Domain of unknown function (DUF3453) PFAM PF11935
Symplekin tight junction protein C terminal PFAM PF12295
FAMILY NOT NAMED Panther PTHR15245
mRNA cleavage and polyadenylation factor II complex, subunit PTA1 KOG KOG1895
symplekin KO K06100
AT AT1G27595

Glyma04g09500

Ubiquitin-fold modifier-conjugating enzyme 1 PFAM PF08694
FAMILY NOT NAMED Panther PTHR12921
Uncharacterized conserved protein KOG KOG3357
biological_process GO GO:0008150
molecular_function GO GO:0003674
Ubiquitin-fold modifier-conjugating enzyme 1 PFAM PF08694
FAMILY NOT NAMED Panther PTHR12921
Uncharacterized conserved protein KOG KOG3357
ufm1-conjugating enzyme 1 KO K12165
AT AT1G27530

Glyma04g09510

Phosphoenolpyruvate carboxykinase PFAM PF01293
Phosphoenolpyruvate carboxykinase (ATP). EC 4.1.1.49
E4.1.1.49, pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49 ] [COG:COG1866 ] [GO:0004612 ] KO K01610
Activity=phosphoenolpyruvate carboxykinase (ATP); Pathway=gluconeogenesis I SoyCyc GLUCONEO-PWY
Activity=phosphoenolpyruvate carboxykinase (ATP); Pathway=superpathway of glyoxylate cycle and fatty acid degradation SoyCyc PWY-561
defense response to fungus, incompatible interaction GO GO:0009817
nucleus GO GO:0005634
cytosol GO GO:0005829
membrane GO GO:0016020
cellular response to phosphate starvation GO GO:0016036
response to cadmium ion GO GO:0046686
nucleolus GO GO:0005730
ATP binding GO GO:0005524
gluconeogenesis GO GO:0006094
phosphoenolpyruvate carboxykinase (ATP) activity GO GO:0004612
Activity=phosphoenolpyruvate carboxykinase ATP; Pathway=Gluconeogenesis SoyCyc GLUCONEO-PWY
Activity=phosphoenolpyruvate carboxykinase ATP; Pathway=superpathway of glyoxylate cycle SoyCyc PWY-561
phosphoenolpyruvate carboxykinase (ATP) activity PFAM PF01293
phosphoenolpyruvate carboxykinase (ATP) EC 4.1.1.49
phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] KO K01610
phosphoenolpyruvate carboxykinase 1 AT AT4G37870

Glyma04g09520

Glutamyl-tRNAGlu reductase, dimerisation domain PFAM PF00745
glutamyl-tRNA reductase EC 1.2.1.70
HEMA; glutamyl-tRNA reductase [EC:1.2.1.- ] [COG:COG0373 ] [GO:0008883 ] KO K02492
Activity=glutamyl-tRNA reductase; Pathway=heme biosynthesis I SoyCyc PWY-5918
Activity=glutamyl-tRNA reductase; Pathway=tetrapyrrole biosynthesis I SoyCyc PWY-5188
Activity=Glutamyl-tRNA reductase; Pathway=tetrapyrrole biosynthesis I SoyCyc PWY-5188
glutamyl-tRNA reductase activity PFAM PF05201
shikimate 5-dehydrogenase activity PFAM PF01488
Ornithine cyclodeaminase/mu-crystallin family PFAM PF02423
NADP oxidoreductase coenzyme F420-dependent PFAM PF03807
glutamyl-tRNA reductase activity PFAM PF00745
glutamyl-tRNA reductase EC 1.2.1.70
glutamyl-tRNA reductase [EC:1.2.1.70] KO K02492
Glutamyl-tRNA reductase family protein AT AT1G58290

Glyma04g09550

AUX/IAA family PFAM PF02309
nucleus PFAM PF02309
indoleacetic acid-induced protein 8 AT AT2G22670

Glyma04g09570

hydroxyproline-rich glycoprotein family protein AT AT5G65660

Glyma04g09580

Helix-loop-helix DNA-binding domain PFAM PF00010
transcription regulator activity PFAM PF00010
beta HLH protein 93 AT AT5G65640

Glyma04g09590

Phosphoglycerate mutase family PFAM PF00300
PHOSPHOGLYCERATE MUTASE Panther PTHR23029
Predicted phosphoglycerate mutase KOG KOG4754
Phosphoglycerate mutase family PFAM PF00300
PHOSPHOGLYCERATE MUTASE Panther PTHR23029
Predicted phosphoglycerate mutase KOG KOG4754
Phosphoglycerate mutase family protein AT AT5G64460

Glyma04g09600

ARYL-ALCOHOL DEHYDROGENASE Panther PTHR11695:SF2
Uncharacterized conserved protein KOG KOG4703
ARYL-ALCOHOL DEHYDROGENASE Panther PTHR11695:SF2
Uncharacterized conserved protein KOG KOG4703
oxidoreductase, zinc-binding dehydrogenase family protein AT AT3G28670

Glyma04g09610

NAF domain PFAM PF03822
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED Panther PTHR22982
Serine/threonine protein kinase KOG KOG0583
protein autophosphorylation GO GO:0046777
protein serine/threonine kinase activity GO GO:0004674
root development GO GO:0048364
response to nitrate GO GO:0010167
plasma membrane GO GO:0005886
response to glucose stimulus GO GO:0009749
protein phosphorylation GO GO:0006468
protein kinase activity GO GO:0004672
kinase activity GO GO:0016301
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
signal transduction PFAM PF03822
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED Panther PTHR22982
Serine/threonine protein kinase KOG KOG0583
CBL-interacting protein kinase 8 AT AT4G24400

Glyma04g09620

transmembrane transport PFAM PF03169
oligopeptide transporter 2 AT AT1G09930

Glyma04g09630

OPT oligopeptide transporter protein PFAM PF03169
ISP4 LIKE PROTEIN Panther PTHR22601
Sexual differentiation process protein ISP4 KOG KOG2262
transmembrane transport PFAM PF03169
ISP4 LIKE PROTEIN Panther PTHR22601
oligopeptide transporter 2 AT AT1G09930

Glyma04g09635

Glyma04g09640

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR-like) superfamily protein AT AT1G09900

Glyma04g09651

TRAF-TYPE ZINC FINGER PROTEIN-RELATED Panther PTHR16295
TRAF-type zinc finger-related AT AT1G09920

Glyma04g09660

Rhamnogalacturonate lyase family PFAM PF06045
Rhamnogalacturonate lyase family PFAM PF06045
Rhamnogalacturonate lyase family protein AT AT1G09910

Glyma04g09670

Rhamnogalacturonate lyase family PFAM PF06045
Rhamnogalacturonate lyase family PFAM PF06045
Rhamnogalacturonate lyase family protein AT AT1G09890

Glyma04g09680

Rhamnogalacturonate lyase family PFAM PF06045
Rhamnogalacturonate lyase family PFAM PF06045
Rhamnogalacturonate lyase family protein AT AT1G09890

Glyma04g09690

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING Panther PTHR22765
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING Panther PTHR22765
RING/U-box superfamily protein AT AT5G05810

Glyma04g09700

PWWP domain PFAM PF00855
Tudor/PWWP/MBT superfamily protein AT AT3G05430

Glyma04g09710

Domain of unknown function (DUF296) PFAM PF03479
Domain of unknown function (DUF296) PFAM PF03479
Predicted AT-hook DNA-binding family protein AT AT5G49700

Glyma04g09730

Ubiquitin carboxyl-terminal hydrolase PFAM PF00443
UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED Panther PTHR10420
Ubiquitin carboxyl-terminal hydrolase KOG KOG1865
zinc ion binding PFAM PF01753
ubiquitin thiolesterase activity PFAM PF00443
UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED Panther PTHR10420
Ubiquitin carboxyl-terminal hydrolase KOG KOG1865
ubiquitin-specific protease 16 AT AT4G24560

Glyma04g09740

ASPARTYL PROTEASES Panther PTHR13683
Aspartyl protease KOG KOG1339
aspartic-type endopeptidase activity PFAM PF00026
aspartic-type endopeptidase activity Panther PTHR13683
Aspartyl protease KOG KOG1339
Eukaryotic aspartyl protease family protein AT AT1G09750

Glyma04g09750

AT AT1G58120

Glyma04g09761

conserved peptide upstream open reading frame 45 AT AT1G58122

Glyma04g09770

Mitochondrial carrier protein PFAM PF00153
MITOCHONDRIAL CARRIER PROTEIN RELATED Panther PTHR11896
Mitochondrial oxoglutarate/malate carrier proteins KOG KOG0759
Mitochondrial carrier protein PFAM PF00153
MITOCHONDRIAL CARRIER PROTEIN RELATED Panther PTHR11896
Mitochondrial oxoglutarate/malate carrier proteins KOG KOG0759
dicarboxylate carrier 2 AT AT4G24570

Glyma04g09780

RhoGAP domain PFAM PF00620
FAMILY NOT NAMED Panther PTHR23176
Rho-GTPase activating protein KOG KOG4271
protein binding PFAM PF00169
signal transduction PFAM PF00620
RHO/RAC/CDC GTPASE-ACTIVATING PROTEIN Panther PTHR23176
Rho-GTPase activating protein KOG KOG4271
Rho GTPase activation protein (RhoGAP) with PH domain AT AT4G24580

Glyma04g09790

AT AT5G49710

Glyma04g09800

Phosphoglucose isomerase PFAM PF00342
GLUCOSE-6-PHOSPHATE ISOMERASE Panther PTHR11469
Glucose-6-phosphate isomerase KOG KOG2446
Glucose-6-phosphate isomerase. EC 5.3.1.9
E5.3.1.9, pgi; glucose-6-phosphate isomerase [EC:5.3.1.9 ] [COG:COG0166 ] [GO:0004347 ] KO K01810
Activity=phosphoglucose_isomerase; Pathway=sucrose biosynthesis SoyCyc SUCSYN-PWY
Activity=phosphoglucose_isomerase; Pathway=gluconeogenesis I SoyCyc GLUCONEO-PWY
Activity=phosphoglucose_isomerase; Pathway=GDP-mannose biosynthesis SoyCyc PWY-5659
Activity=phosphoglucose_isomerase; Pathway=starch biosynthesis SoyCyc PWY-622
Activity=phosphoglucose_isomerase; Pathway=colanic acid building blocks biosynthesis SoyCyc COLANSYN-PWY
Activity=phosphoglucose_isomerase; Pathway=sucrose degradation VI (anaerobic) SoyCyc PWY-3801
Activity=phosphoglucose_isomerase; Pathway=sucrose degradation III SoyCyc PWY-621
Activity=phosphoglucose_isomerase; Pathway=superpathway of glycolysis and Entner-Doudoroff SoyCyc GLYCOLYSIS-E-D
Activity=phosphoglucose_isomerase; Pathway=glycolysis I SoyCyc GLYCOLYSIS
cytosol GO GO:0005829
chloroplast stroma GO GO:0009570
chloroplast GO GO:0009507
chloroplast envelope GO GO:0009941
positive regulation of flower development GO GO:0009911
plastid GO GO:0009536
starch metabolic process GO GO:0005982
glucose-6-phosphate isomerase activity GO GO:0004347
Activity=phosphoglucose_isomerase; Pathway=sucrose degradation III SoyCyc PWY-621
Activity=phosphoglucose_isomerase; Pathway=sucrose degradation to ethanol and lactate anaerobic SoyCyc PWY-3801
Activity=phosphoglucose_isomerase; Pathway=Glycolysis I SoyCyc GLYCOLYSIS
Activity=phosphoglucose_isomerase; Pathway=homolactic fermentation SoyCyc ANAEROFRUCAT-PWY
Activity=phosphoglucose_isomerase; Pathway=superpathway of glycolysis and Entner-Doudoroff SoyCyc GLYCOLYSIS-E-D
Activity=phosphoglucose_isomerase; Pathway=Gluconeogenesis SoyCyc GLUCONEO-PWY
Activity=phosphoglucose_isomerase; Pathway=starch biosynthesis SoyCyc PWY-622
Activity=phosphoglucose_isomerase; Pathway=GDP-mannose biosynthesis I SoyCyc PWY-5657
Activity=phosphoglucose_isomerase; Pathway=Glycolysis III SoyCyc ANAGLYCOLYSIS-PWY
Activity=phosphoglucose_isomerase; Pathway=GDP-mannose biosynthesis II SoyCyc PWY-5659
gluconeogenesis PFAM PF00342
gluconeogenesis Panther PTHR11469
Glucose-6-phosphate isomerase KOG KOG2446
glucose-6-phosphate isomerase EC 5.3.1.9
glucose-6-phosphate isomerase [EC:5.3.1.9] KO K01810
phosphoglucose isomerase 1 AT AT4G24620

Glyma04g09811

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR) superfamily protein AT AT5G18475

Glyma04g09820

14-3-3 protein PFAM PF00244
14-3-3 Panther PTHR18860
Multifunctional chaperone (14-3-3 family) KOG KOG0841
plant-type cell wall GO GO:0009505
defense response to bacterium GO GO:0042742
brassinosteroid mediated signaling pathway GO GO:0009742
response to cadmium ion GO GO:0046686
cell wall GO GO:0005618
cytosol GO GO:0005829
chloroplast GO GO:0009507
protein phosphorylated amino acid binding GO GO:0045309
cytoplasm GO GO:0005737
plasma membrane GO GO:0005886
protein binding GO GO:0005515
nucleus GO GO:0005634
14-3-3 protein PFAM PF00244
protein domain specific binding Panther PTHR18860
Multifunctional chaperone (14-3-3 family) KOG KOG0841
G-box regulating factor 6 AT AT5G10450

Glyma04g09830

CutA1 divalent ion tolerance protein PFAM PF03091
DIVALENT CATION TOLERANCE CUTA-RELATED Panther PTHR23419
Divalent cation tolerance-related protein KOG KOG3338
response to metal ion PFAM PF03091
response to metal ion Panther PTHR23419
Divalent cation tolerance-related protein KOG KOG3338
Nitrogen regulatory PII-like, alpha/beta AT AT2G33740

Glyma04g09840

Cyclin, C-terminal domain PFAM PF02984
CYCLINS Panther PTHR10177
G1/S-specific cyclin D KOG KOG0656
Cyclin, N-terminal domain PFAM PF00134
nucleus PFAM PF02984
CYCLINS Panther PTHR10177
G1/S-specific cyclin D KOG KOG0656
CYCLIN D4;1 AT AT5G65420

Glyma04g09880

sequence-specific DNA binding transcription factors;transcription regulators AT AT5G09460

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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