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Integrating Genetics and Genomics to Advance Soybean Research

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Genes Covered By A Chromosome Alteration FN300012.04.BC1F3.4

Gene NameGene Annotation
Glyma12g19520
  • lactate/malate dehydrogenase, alpha/beta C-terminal domainPFAMPF02866
  • MALATE AND LACTATE DEHYDROGENASEPantherPTHR11540
  • NAD-dependent malate dehydrogenaseKOGKOG1494
  • apoplastGOGO:0048046
  • membraneGOGO:0016020
  • copper ion bindingGOGO:0005507
  • malate dehydrogenase activityGOGO:0016615
  • chloroplastGOGO:0009507
  • response to salt stressGOGO:0009651
  • response to cadmium ionGOGO:0046686
  • defense response to bacteriumGOGO:0042742
  • cell wallGOGO:0005618
  • mitochondrionGOGO:0005739
  • response to coldGOGO:0009409
  • Activity=malate dehydrogenase; Pathway=gluconeogenesis ISoyCycGLUCONEO-PWY
  • Activity=malate dehydrogenase; Pathway=aspartate degradation IISoyCycMALATE-ASPARTATE-SHUTTLE-PWY
  • Activity=malate dehydrogenase; Pathway=superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycleSoyCycPWY-5464
  • Activity=malate dehydrogenase; Pathway=superpathway of glyoxylate cycle and fatty acid degradationSoyCycPWY-561
  • Activity=malate dehydrogenase; Pathway=glyoxylate cycleSoyCycGLYOXYLATE-BYPASS
  • Activity=malate dehydrogenase; Pathway=TCA cycle II (eukaryotic)SoyCycPWY-5690
  • Activity=malate dehydrogenase; Pathway=TCA cycle variation III eukaryoticSoyCycPWY-5690
  • Activity=malate dehydrogenase; Pathway=GluconeogenesisSoyCycGLUCONEO-PWY
  • Activity=malate dehydrogenase; Pathway=aspartate degradation IISoyCycMALATE-ASPARTATE-SHUTTLE-PWY
  • oxidoreductase activityPFAMPF00056
  • lactate/malate dehydrogenase, alpha/beta C-terminal domainPFAMPF02866
  • MALATE AND LACTATE DEHYDROGENASEPantherPTHR11540
  • NAD-dependent malate dehydrogenaseKOGKOG1494
  • Lactate/malate dehydrogenase family proteinATAT1G53240
Glyma12g19660
  • glycine hydroxymethyltransferase activityPFAMPF00464
  • glycine hydroxymethyltransferase activityPantherPTHR11680
  • serine hydroxymethyltransferase 3ATAT4G32520
Glyma12g19800
  • NAD DEPENDENT EPIMERASE/DEHYDRATASEPantherPTHR10366
  • 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2ATAT2G26260
Glyma12g19940
Glyma12g19950
Glyma12g19960
Glyma12g20160
  • TCP family transcription factorPFAMPF03634
  • TCP family transcription factorPFAMPF03634
  • TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3ATAT1G53230
Glyma12g20180
Glyma12g20201
Glyma12g20220
  • homogentisate 1,2-dioxygenasePFAMPF04209
  • HOMOGENTISATE 1,2-DIOXYGENASEPantherPTHR11056
  • Homogentisate 1,2-dioxygenaseKOGKOG1417
  • tyrosine metabolic processPFAMPF04209
  • tyrosine metabolic processPantherPTHR11056
  • Homogentisate 1,2-dioxygenaseKOGKOG1417
  • homogentisate 1,2-dioxygenaseATAT5G54080
Glyma12g20230
  • Zinc finger, C3HC4 type (RING finger)PFAMPF00097
  • RING FINGER PROTEIN 24-RELATEDPantherPTHR22766
  • Zinc finger, C3HC4 type (RING finger)PFAMPF00097
  • RING FINGER PROTEIN 24-RELATEDPantherPTHR22766
  • RING/U-box superfamily proteinATAT3G15070
Glyma18g22170
  • ATP citrate lyase (ACL) family proteinATAT2G20420
Glyma18g22256
  • diacylglycerol kinase activityPFAMPF00781
  • diacylglycerol kinase activityPFAMPF00609
  • DIACYLGLYCEROL KINASEPantherPTHR11255
  • Diacylglycerol kinaseKOGKOG1169
  • diacylglycerol kinase 7ATAT4G30340
  • diacylglycerol kinase 4ATAT5G57690
Glyma18g22343
Glyma18g22430
  • Glycosyl hydrolases family 28PFAMPF00295
  • polygalacturonase activityPFAMPF00295
  • Pectin lyase-like superfamily proteinATAT3G07840
Glyma18g22670
  • AP2/B3-like transcriptional factor family proteinATAT2G33720
Glyma18g22696
  • Cytidine/deoxycytidylate deaminase family proteinATAT5G28050
Glyma18g22723
  • Zinc finger, C3HC4 type (RING finger)PFAMPF00097
  • RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2).PantherPTHR22764
  • RING/U-box superfamily proteinATAT3G20395
Glyma18g22750
Glyma18g22760
Glyma18g22770
Glyma18g22775
Glyma18g22780
  • Enolase, C-terminal TIM barrel domainPFAMPF00113
  • ENOLASEPantherPTHR11902
  • EnolaseKOGKOG2670
  • Phosphopyruvate hydratase.EC4.2.1.11
  • E4.2.1.11, eno; enolase [EC:4.2.1.11 ] [COG:COG0148 ] [GO:0004634 ]KOK01689
  • chloroplastGOGO:0009507
  • trichome morphogenesisGOGO:0010090
  • phosphopyruvate hydratase activityGOGO:0004634
  • Activity=phosphopyruvate hydratase; Pathway=gluconeogenesis ISoyCycGLUCONEO-PWY
  • Activity=phosphopyruvate hydratase; Pathway=sucrose degradation VI (anaerobic)SoyCycPWY-3801
  • Activity=phosphopyruvate hydratase; Pathway=superpathway of glycolysis and Entner-DoudoroffSoyCycGLYCOLYSIS-E-D
  • Activity=phosphopyruvate hydratase; Pathway=superpathway of cytosolic glycolysis (plants), pyruvate dehydrogenase and TCA cycleSoyCycPWY-5464
  • Activity=phosphopyruvate hydratase; Pathway=Rubisco shuntSoyCycPWY-5723
  • Activity=phosphopyruvate hydratase; Pathway=glycolysis ISoyCycGLYCOLYSIS
  • Activity=phosphopyruvate hydratase; Pathway=glycolysis IV (plant cytosol)SoyCycPWY-1042
  • Activity=phosphopyruvate hydratase; Pathway=glycolysis II (from fructose-6P)SoyCycPWY-5484
  • Activity=phosphopyruvate hydratase; Pathway=superpathway of cytosolic glycolysis plants, pyruvate dehydrogenase and TCA cycleSoyCycPWY-5464
  • Activity=phosphopyruvate hydratase; Pathway=Rubisco shuntSoyCycPWY-5723
  • Activity=phosphopyruvate hydratase; Pathway=sucrose degradation to ethanol and lactate anaerobicSoyCycPWY-3801
  • Activity=phosphopyruvate hydratase; Pathway=Glycolysis ISoyCycGLYCOLYSIS
  • Activity=phosphopyruvate hydratase; Pathway=superpathway of glycolysis and Entner-DoudoroffSoyCycGLYCOLYSIS-E-D
  • Activity=phosphopyruvate hydratase; Pathway=GluconeogenesisSoyCycGLUCONEO-PWY
  • Activity=phosphopyruvate hydratase; Pathway=Glycolysis IIISoyCycANAGLYCOLYSIS-PWY
  • Activity=phosphopyruvate hydratase; Pathway=Glycolysis IV plant cytosolSoyCycPWY-1042
  • phosphopyruvate hydratase complexPFAMPF03952
  • phosphopyruvate hydratase complexPFAMPF00113
  • ENOLASEPantherPTHR11902
  • EnolaseKOGKOG2670
  • phosphopyruvate hydrataseEC4.2.1.11
  • enolase [EC:4.2.1.11]KOK01689
  • enolase 1ATAT1G74030
Glyma18g22790
Glyma18g22800
  • AMP-binding enzymePFAMPF00501
  • AMP DEPENDENT LIGASE/SYNTHETASEPantherPTHR11968
  • Acyl-CoA synthetaseKOGKOG1175
  • catalytic activityPFAMPF00501
  • AMP DEPENDENT LIGASE/SYNTHETASEPantherPTHR11968
  • Acyl-CoA synthetaseKOGKOG1175
  • acyl-activating enzyme 17ATAT5G23050
Glyma18g22811
  • FAR1 DNA-binding domainPFAMPF03101
  • Far-red impaired responsive (FAR1) family proteinATAT3G59470
Glyma18g22820
Glyma18g22830
  • EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 3PantherPTHR10410:SF3
  • EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 3PantherPTHR10410:SF3
  • translation initiation factor 3 subunit H1ATAT1G10840
Glyma18g22860
Glyma18g22870
  • EF handPFAMPF00036
  • CALMODULINPantherPTHR10891
  • Calmodulin and related proteins (EF-Hand superfamily)KOGKOG0027
  • EF handPFAMPF00036
  • CALMODULINPantherPTHR10891
  • Calmodulin and related proteins (EF-Hand superfamily)KOGKOG0027
  • EF hand calcium-binding protein familyATAT1G18530
Glyma18g22880
  • haloacid dehalogenase-like hydrolasePFAMPF00702
  • CATION-TRANSPORTING ATPASEPantherPTHR11939
  • P-type ATPaseKOGKOG0206
  • nucleotide bindingPFAMPF00122
  • catalytic activityPFAMPF00702
  • CATION-TRANSPORTING ATPASEPantherPTHR11939
  • P-type ATPaseKOGKOG0206
  • ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family proteinATAT1G68710
Glyma18g22896
  • sequence-specific DNA bindingPFAMPF00808
  • TATA-BINDING PROTEIN-ASSOCIATED PHOSPHOPROTEINPantherPTHR11064
  • nuclear factor Y, subunit B13ATAT5G23090
Glyma18g22913
  • Protein of unknown function, DUF617PFAMPF04759
  • Protein of unknown function, DUF617ATAT5G23100
Glyma18g22930
  • Kinesin motor domainPFAMPF00225
  • KINESIN HEAVY CHAINPantherPTHR16012
  • Kinesin-like proteinKOGKOG4280
  • microtubule motor activityPFAMPF00225
  • KINESIN HEAVY CHAINPantherPTHR16012
  • Kinesin-like proteinKOGKOG4280
  • ATP binding microtubule motor family proteinATAT1G18550
Glyma18g22935
Glyma18g22940
  • Helicase conserved C-terminal domainPFAMPF00271
  • DEAD BOX ATP-DEPENDENT RNA HELICASEPantherPTHR10967
  • ATP-dependent RNA helicase pitchouneKOGKOG0342
  • ATP-dependent helicase activityPFAMPF00270
  • helicase activityPFAMPF00271
  • DEAD BOX ATP-DEPENDENT RNA HELICASEPantherPTHR10967
  • ATP-dependent RNA helicase pitchouneKOGKOG0342
  • RNA helicaseEC3.6.4.13
  • ATP-dependent RNA helicase DDX18/HAS1 [EC:3.6.4.13]KOK13179
  • P-loop containing nucleoside triphosphate hydrolases superfamily proteinATAT3G18600
Glyma18g22960
  • Universal stress protein familyPFAMPF00582
  • response to stressPFAMPF00582
  • Adenine nucleotide alpha hydrolases-like superfamily proteinATAT1G48960
Glyma18g22973
  • DNA bindingPFAMPF02892
  • protein dimerization activityPFAMPF05699
  • BED FINGER-RELATEDPantherPTHR23272
  • Tam3-transposase (Ac family)KOGKOG1121
  • BED zinc finger ;hAT family dimerisation domainATAT3G42170
Glyma18g22986
Glyma18g23000
Glyma18g23030
Glyma18g23102
  • Raffinose synthase or seed inhibition protein Sip1PFAMPF05691
  • seed imbibition 2ATAT3G57520
Glyma18g23174
  • mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)PFAMPF02326
  • Plant mitochondrial ATPase, F0 complex, subunit 8 proteinATAT2G07707
Glyma18g23247
  • TFIIE alpha subunitPFAMPF02002
  • TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNITPantherPTHR13097
  • Transcription initiation factor IIE, alpha subunitKOGKOG2593
  • Transcription factor TFIIE, alpha subunitATAT1G03280
Glyma18g23320
  • ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASEPantherPTHR11452
  • ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASEPantherPTHR11452
  • Hypoxia-responsive family proteinATAT3G05550
Glyma18g23340
Glyma18g23397
Glyma18g23454
  • double-stranded RNA bindingPFAMPF00035
  • dsRNA-binding domain-like superfamily proteinATAT1G09700
Glyma18g23512
Glyma18g23570
Glyma18g23580
Glyma18g23590
  • OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATEDPantherPTHR13356
  • Predicted nucleic acid binding proteinKOGKOG3416
  • OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATEDPantherPTHR13356
  • Predicted nucleic acid binding proteinKOGKOG3416
  • Nucleic acid-binding, OB-fold-like proteinATAT5G63690
Glyma18g23750
  • protein dimerization activityPFAMPF05699
  • BED FINGER-RELATEDPantherPTHR23272
  • BED zinc finger ;hAT family dimerisation domainATAT3G42170






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