Genes Covered By A Chromosome Alteration FN0176202.01.01.M4.3

Gene Name

Gene Annotation

Glyma01g25690

chorismate binding enzyme PFAM PF00425
AMINOBENZOATE/ANTHRANILATE SYNTHASE Panther PTHR11236
Isochorismate synthase KOG KOG1223
Activity=isochorismate synthase; Pathway=1,4-dihydroxy-2-naphthoate biosynthesis II (plants) SoyCyc PWY-5791
Activity=isochorismate synthase; Pathway=superpathway of phylloquinol biosynthesis SoyCyc PWY-5863
Activity=isochorismate synthase; Pathway=1,4-dihydroxy-2-naphthoate biosynthesis II plants SoyCyc PWY-5791
Activity=isochorismate synthase; Pathway=salicylate biosynthesis SoyCyc PWY-981
Activity=isochorismate synthase; Pathway=superpathway of phylloquinone biosynthesis SoyCyc PWY-5863
chorismate binding enzyme PFAM PF00425
AMINOBENZOATE/ANTHRANILATE SYNTHASE Panther PTHR11236
Isochorismate synthase KOG KOG1223
isochorismate synthase EC 5.4.4.2
menaquinone-specific isochorismate synthase [EC:5.4.4.2] KO K02552
isochorismate synthase 2 AT AT1G18870

Glyma01g25710

Homeobox domain PFAM PF00046
HOMEOBOX PROTEIN Panther PTHR11850
Transcription factor MEIS1 and related HOX domain proteins KOG KOG0773
Associated with HOX PFAM PF07526
PFAM PF05920
sequence-specific DNA binding PFAM PF00046
HOMEOBOX PROTEIN Panther PTHR11850
Transcription factor MEIS1 and related HOX domain proteins KOG KOG0773
POX (plant homeobox) family protein AT AT5G02030

Glyma01g25734

HELICASE-RELATED Panther PTHR10492

Glyma01g25758

PIF1 helicase PFAM PF05970
HELICASE-RELATED Panther PTHR10492
PIF1 helicase AT AT3G51700

Glyma01g25782

AT AT3G56870

Glyma01g25806

FAD-dependent oxidoreductase family protein AT AT5G48440

Glyma01g25830

Domain of unknown function (DUF1929) PFAM PF09118
Glyoxal oxidase N-terminus PFAM PF07250
Domain of unknown function (DUF1929) PFAM PF09118
glyoxal oxidase-related protein AT AT3G53950

Glyma01g25861

intracellular PFAM PF00366
intracellular Panther PTHR10744
Nucleic acid-binding, OB-fold-like protein AT AT3G48930

Glyma01g25890

POT family PFAM PF00854
OLIGOPEPTIDE TRANSPORTER-RELATED Panther PTHR11654
H+/oligopeptide symporter KOG KOG1237
Major Facilitator Superfamily PFAM PF07690
oligopeptide transport PFAM PF00854
OLIGOPEPTIDE TRANSPORTER-RELATED Panther PTHR11654
H+/oligopeptide symporter KOG KOG1237
Major facilitator superfamily protein AT AT3G53960

Glyma01g25903

Glyma01g25916

AT AT3G09280

Glyma01g25930

Glyma01g25940

Proteasome A-type and B-type PFAM PF00227
PROTEASOME SUBUNIT ALPHA/BETA Panther PTHR11599
20S proteasome, regulatory subunit alpha type PSMA2/PRE8 KOG KOG0181
Proteasome endopeptidase complex. EC 3.4.25.1
PSMA2; 20S proteasome subunit alpha 2 [EC:3.4.25.1 ] [COG:COG0638 ] KO K02726
defense response to bacterium GO GO:0042742
proteasome complex GO GO:0000502
proteasome core complex GO GO:0005839
response to zinc ion GO GO:0010043
cytosolic ribosome GO GO:0022626
ubiquitin-dependent protein catabolic process GO GO:0006511
peptidase activity GO GO:0008233
threonine-type endopeptidase activity GO GO:0004298
endopeptidase activity GO GO:0004175
ubiquitin-dependent protein catabolic process PFAM PF10584
proteolysis involved in cellular protein catabolic process PFAM PF00227
PROTEASOME SUBUNIT ALPHA/BETA Panther PTHR11599
20S proteasome, regulatory subunit alpha type PSMA2/PRE8 KOG KOG0181
proteasome endopeptidase complex EC 3.4.25.1
20S proteasome subunit alpha 2 [EC:3.4.25.1] KO K02726
proteasome subunit PAB1 AT AT1G16470

Glyma01g25960

AT AT5G02020

Glyma01g25980

Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein AT AT5G05960

Glyma01g26010

PRONE (Plant-specific Rop nucleotide exchanger) PFAM PF03759
Rho guanyl-nucleotide exchange factor activity PFAM PF03759
RHO guanyl-nucleotide exchange factor 7 AT AT5G02010

Glyma01g26220

Glutathione S-transferase, C-terminal domain PFAM PF00043
GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING Panther PTHR11260
Glutathione S-transferase KOG KOG0406
protein binding PFAM PF02798
Glutathione S-transferase, C-terminal domain PFAM PF00043
GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING Panther PTHR11260
Glutathione S-transferase KOG KOG0406
glutathione S-transferase TAU 8 AT AT3G09270

Glyma01g26230

Glutathione S-transferase, C-terminal domain PFAM PF00043
GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING Panther PTHR11260
Glutathione S-transferase KOG KOG0406
protein binding PFAM PF02798
Glutathione S-transferase, C-terminal domain PFAM PF00043
GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING Panther PTHR11260
Glutathione S-transferase KOG KOG0406
glutathione S-transferase TAU 8 AT AT3G09270

Glyma01g26300

Universal stress protein family PFAM PF00582
response to stress PFAM PF00582
Adenine nucleotide alpha hydrolases-like superfamily protein AT AT3G53990

Glyma01g26310

hydrolase activity, hydrolyzing O-glycosyl compounds PFAM PF00722
xyloglucan endotransglucosylase/hydrolase 8 AT AT1G11545

Glyma01g26325

UDP-Glycosyltransferase superfamily protein AT AT3G11670

Glyma01g26340

AT AT3G54000

Glyma01g26350

Tetratricopeptide repeat PFAM PF00515
FK506 BINDING PROTEIN Panther PTHR10516
FKBP-type peptidyl-prolyl cis-trans isomerase KOG KOG0543
protein folding PFAM PF00254
Tetratricopeptide repeat PFAM PF07719
Tetratricopeptide repeat PFAM PF00515
FK506 BINDING PROTEIN Panther PTHR10516
FKBP-type peptidyl-prolyl cis-trans isomerase KOG KOG0543
FKBP-type peptidyl-prolyl cis-trans isomerase family protein AT AT3G54010

Glyma01g26360

Ctr copper transporter family PFAM PF04145
SOLUTE CARRIER FAMILY 31 (COPPER TRANSPORTERS) Panther PTHR12483
Copper transporter KOG KOG3386
copper ion transmembrane transporter activity PFAM PF04145
copper ion transmembrane transporter activity Panther PTHR12483
Copper transporter KOG KOG3386
Ctr copper transporter family AT AT2G26975

Glyma01g26570

Hsp20/alpha crystallin family PFAM PF00011
SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY Panther PTHR11527
Alpha crystallins KOG KOG3591
Hsp20/alpha crystallin family PFAM PF00011
SMALL HEAT-SHOCK PROTEIN (HSP20) FAMILY Panther PTHR11527
Alpha crystallins KOG KOG3591
HSP20-like chaperones superfamily protein AT AT1G53540

Glyma01g26580

GDSL-like Lipase/Acylhydrolase PFAM PF00657
ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN Panther PTHR22835:SF27
lipid metabolic process PFAM PF00657
ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN Panther PTHR22835:SF27
GDSL-like Lipase/Acylhydrolase superfamily protein AT AT5G33370

Glyma01g26590

Domain of unknown function (DUF3527) PFAM PF12043
Protein of unknown function (DUF3527) AT AT5G01030

Glyma01g26600

UvrB/uvrC motif PFAM PF02151
nucleotide-excision repair PFAM PF02151
Nuclear transport factor 2 (NTF2) family protein AT AT3G09250

Glyma01g26606

Ycf1 PFAM PF05758
Ycf1 protein AT ATCG01130

Glyma01g26613

Glyma01g26620

MALATE AND LACTATE DEHYDROGENASE Panther PTHR11540
oxidoreductase activity PFAM PF00056
lactate/malate dehydrogenase, alpha/beta C-terminal domain PFAM PF02866
MALATE AND LACTATE DEHYDROGENASE Panther PTHR11540
peroxisomal NAD-malate dehydrogenase 2 AT AT5G09660

Glyma01g26650

Myb-like DNA-binding domain PFAM PF00249
MYB-RELATED Panther PTHR10641
Transcription factor, Myb superfamily KOG KOG0048
myb proto-oncogene protein, plant KO K09422
Myb-like DNA-binding domain PFAM PF00249
MYB-RELATED Panther PTHR10641
Transcription factor, Myb superfamily KOG KOG0048
myb proto-oncogene protein, plant KO K09422
myb domain protein 1 AT AT3G09230

Glyma01g26670

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
MEMBRANE ASSOCIATED RING FINGER Panther PTHR23012
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
MEMBRANE ASSOCIATED RING FINGER Panther PTHR23012
RING/FYVE/PHD zinc finger superfamily protein AT AT5G05830

Glyma01g26681

hydrolase activity, acting on ester bonds PFAM PF04827
AT AT5G35695

Glyma01g26690

SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
protein phosphorylation PFAM PF07714
protein phosphorylation PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Protein kinase protein with tetratricopeptide repeat domain AT AT5G59010

Glyma01g26700

SPHINGOMYELIN SYNTHETASE Panther PTHR21290
Uncharacterized conserved protein KOG KOG3058
SPHINGOMYELIN SYNTHETASE Panther PTHR21290
Uncharacterized conserved protein KOG KOG3058
Arabidopsis Inositol phosphorylceramide synthase 1 AT AT3G54020

Glyma01g26750

Multicopper oxidase PFAM PF07731
MULTI-COPPER OXIDASE Panther PTHR11709
Multicopper oxidases KOG KOG1263
oxidoreductase activity PFAM PF07732
oxidoreductase activity PFAM PF00394
oxidoreductase activity PFAM PF07731
MULTI-COPPER OXIDASE Panther PTHR11709
Multicopper oxidases KOG KOG1263
laccase 7 AT AT3G09220

Glyma01g26766

AT AT1G61900

Glyma01g26783

oxidoreductase activity PFAM PF07732
laccase 7 AT AT3G09220

Glyma01g26800

MULTI-COPPER OXIDASE Panther PTHR11709
oxidoreductase activity PFAM PF07732
oxidoreductase activity PFAM PF00394
MULTI-COPPER OXIDASE Panther PTHR11709
laccase 7 AT AT3G09220

Glyma01g26813

nucleosome assembly PFAM PF00956
nucleosome assembly Panther PTHR11875
NAP1-related protein 2 AT AT1G18800

Glyma01g26826

UNCHARACTERIZED Panther PTHR21528
Undecaprenyl pyrophosphate synthetase family protein AT AT1G11755

Glyma01g26840

PAR1 protein PFAM PF06521
PAR1 protein PFAM PF06521
PAR1 protein AT AT3G54040

Glyma01g26860

AT AT2G37960

Glyma01g26900

AT AT2G37960

Glyma01g26915

oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
cytochrome P450, family 712, subfamily A, polypeptide 1 AT AT2G42250

Glyma01g26930

KOW motif PFAM PF00467
positive regulation of transcription elongation from RNA polymerase II promoter PFAM PF02357
KOW motif PFAM PF00467
plastid transcriptionally active 13 AT AT3G09210

Glyma01g26940

Legume lectin domain PFAM PF00139
binding PFAM PF00139
Concanavalin A-like lectin family protein AT AT5G01090

Glyma01g26950

Tubulin/FtsZ family, C-terminal domain PFAM PF03953
TUBULIN Panther PTHR11588
Beta tubulin KOG KOG1375
tubulin beta KO K07375
microtubule cytoskeleton GO GO:0015630
response to cold GO GO:0009409
vacuole GO GO:0005773
microtubule-based process GO GO:0007017
membrane GO GO:0016020
structural constituent of cytoskeleton GO GO:0005200
plasma membrane GO GO:0005886
response to salt stress GO GO:0009651
response to cadmium ion GO GO:0046686
tubulin complex GO GO:0045298
cell wall GO GO:0005618
nucleolus GO GO:0005730
GTP binding GO GO:0005525
structural molecule activity GO GO:0005198
GTPase activity GO GO:0003924
protein binding GO GO:0005515
protein complex PFAM PF00091
protein complex PFAM PF03953
microtubule Panther PTHR11588
Beta tubulin KOG KOG1375
tubulin beta KO K07375
tubulin beta chain 3 AT AT5G62700

Glyma01g26961

BED FINGER-RELATED Panther PTHR23272
Tam3-transposase (Ac family) KOG KOG1121
BED zinc finger ;hAT family dimerisation domain AT AT3G42170

Glyma01g26970

SOUL heme-binding protein PFAM PF04832
HEME-BINDING PROTEIN-RELATED Panther PTHR11220
SOUL heme-binding protein PFAM PF04832
HEME-BINDING PROTEIN-RELATED Panther PTHR11220
SOUL heme-binding family protein AT AT2G37970

Glyma01g26981

Yos1-like PFAM PF08571
UNCHARACTERIZED Panther PTHR15858
Predicted membrane protein KOG KOG4779
Yos1-like protein AT AT2G37975

Glyma01g26990

pfkB family carbohydrate kinase PFAM PF00294
SUGAR KINASE RELATED Panther PTHR10584
Ribokinase KOG KOG2855
pfkB family carbohydrate kinase PFAM PF00294
SUGAR KINASE RELATED Panther PTHR10584
Ribokinase KOG KOG2855
fructokinase-like 1 AT AT3G54090

Glyma01g27005

GDP-fucose protein O-fucosyltransferase PFAM PF10250
O-fucosyltransferase family protein AT AT3G54100

Glyma01g27020

AT AT2G29880

Glyma01g27040

Protein of unknown function (DUF674) PFAM PF05056
Protein of unknown function (DUF674) PFAM PF05056
Protein of unknown function (DUF674) AT AT5G01150

Glyma01g27060

SOLUTE CARRIER FAMILY 35 Panther PTHR11132
Nucleotide-sugar transporter VRG4/SQV-7 KOG KOG1444
Triose-phosphate Transporter family PFAM PF03151
SOLUTE CARRIER FAMILY 35 Panther PTHR11132
Nucleotide-sugar transporter VRG4/SQV-7 KOG KOG1444
golgi nucleotide sugar transporter 3 AT AT1G76340

Glyma01g27110

Integral membrane protein DUF6 PFAM PF00892
SOLUTE CARRIER FAMILY 35 Panther PTHR11132
Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter KOG KOG1441
transmembrane transport PFAM PF08449
membrane PFAM PF00892
Triose-phosphate Transporter family PFAM PF03151
SOLUTE CARRIER FAMILY 35 Panther PTHR11132
Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter KOG KOG1441
Nucleotide-sugar transporter family protein AT AT3G11320

Glyma01g27120

Mitochondrial carrier protein PFAM PF00153
MITOCHONDRIAL CARRIER PROTEIN RELATED Panther PTHR11896
Mitochondrial fatty acid anion carrier protein/Uncoupling protein KOG KOG0753
vacuolar membrane GO GO:0005774
photorespiration GO GO:0009853
mitochondrion GO GO:0005739
chloroplast GO GO:0009507
transport GO GO:0006810
oxidative phosphorylation uncoupler activity GO GO:0017077
mitochondrial inner membrane GO GO:0005743
binding GO GO:0005488
proton transport GO GO:0015992
Mitochondrial carrier protein PFAM PF00153
MITOCHONDRIAL CARRIER PROTEIN RELATED Panther PTHR11896
Mitochondrial fatty acid anion carrier protein/Uncoupling protein KOG KOG0753
plant uncoupling mitochondrial protein 1 AT AT3G54110

Glyma01g27130

Reticulon PFAM PF02453
RETICULON/NOGO Panther PTHR10994
Reticulon KOG KOG1792
endoplasmic reticulum PFAM PF02453
endoplasmic reticulum Panther PTHR10994
Reticulon KOG KOG1792
Reticulon family protein AT AT3G54120

Glyma01g27145

regulation of transcription, DNA-dependent PFAM PF02362
auxin response factor 6 AT AT1G30330

Glyma01g27160

ALDEHYDE DEHYDROGENASE-RELATED Panther PTHR11699
oxidoreductase activity PFAM PF00171
ALDEHYDE DEHYDROGENASE-RELATED Panther PTHR11699
aldehyde dehydrogenase 7B4 AT AT1G54100

Glyma01g27170

Thioredoxin superfamily protein AT AT5G57230

Glyma01g27200

Josephin PFAM PF02099
ATAXIN-3 Panther PTHR14159
Ataxin 3/Josephin KOG KOG2935
Josephin PFAM PF02099
ATAXIN-3 Panther PTHR14159
Ataxin 3/Josephin KOG KOG2935
Cysteine endopeptidases. EC 3.4.22.-
Ataxin-3 [EC:3.4.22.-] KO K11863
Josephin family protein AT AT3G54130

Glyma01g27215

Cysteine proteinases superfamily protein AT AT2G38025

Glyma01g27230

CLATHRIN COAT ASSEMBLY PROTEIN Panther PTHR11998
CLATHRIN COAT ASSEMBLY PROTEIN Panther PTHR11998
Clathrin adaptor complexes medium subunit family protein AT AT4G24550

Glyma01g27240

mRNA capping enzyme, guanylyltransferase (alpha) subunit KOG KOG2386
mRNA capping enzyme, C-terminal domain PFAM PF03919
MRNA CAPPING ENZYME Panther PTHR10367
protein dephosphorylation PFAM PF00782
mRNA processing PFAM PF01331
DNA ligase (ATP) activity PFAM PF01068
mRNA guanylyltransferase activity PFAM PF03919
MRNA CAPPING ENZYME Panther PTHR10367
mRNA capping enzyme, guanylyltransferase (alpha) subunit KOG KOG2386
mRNA guanylyltransferase EC 2.7.7.50
polynucleotide 5'-phosphatase EC 3.1.3.33
mRNA-capping enzyme [EC:2.7.7.50 3.1.3.33] KO K13917
mRNA capping enzyme family protein AT AT3G09100

Glyma01g27250

FG-GAP repeat PFAM PF01839
FG-GAP repeat PFAM PF01839
defective in exine formation protein (DEX1) AT AT3G09090

Glyma01g27260

Pectinesterase PFAM PF01095
pectinesterase activity PFAM PF04043
cell wall modification PFAM PF01095
Plant invertase/pectin methylesterase inhibitor superfamily AT AT3G05610

Glyma01g27280

Predicted membrane protein (DUF2253) PFAM PF10010
Protein of unknown function (DUF962) PFAM PF06127
Protein of unknown function (DUF962) AT AT3G09085

Glyma01g27291

Glyma01g27301

nucleobase, nucleoside, nucleotide kinase activity PFAM PF00406
nucleobase, nucleoside, nucleotide kinase activity Panther PTHR23359
P-loop containing nucleoside triphosphate hydrolases superfamily protein AT AT3G01820

Glyma01g27310

AT AT2G29880

Glyma01g27360

Protein of unknown function (DUF740) PFAM PF05340
Protein of unknown function (DUF740) PFAM PF05340
Protein of unknown function (DUF740) AT AT3G09070

Glyma01g27385

CHOLINE/ETHANOALAMINE KINASE RELATED Panther PTHR22603
choline kinase 1 AT AT1G71697

Glyma01g27410

MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-RELATED Panther PTHR10281
heme binding PFAM PF00173
MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-RELATED Panther PTHR10281
membrane-associated progesterone binding protein 2 AT AT2G24940

Glyma01g27440

Leucine Rich Repeat PFAM PF00560
LEUCINE-RICH REPEAT-CONTAINING PROTEIN Panther PTHR23155
Apoptotic ATPase KOG KOG4658
innate immune response PFAM PF01582
apoptosis PFAM PF00931
LEUCINE-RICH REPEAT-CONTAINING PROTEIN Panther PTHR23155
Apoptotic ATPase KOG KOG4658
Disease resistance protein (TIR-NBS-LRR class) family AT AT5G36930

Glyma01g27455

innate immune response PFAM PF01582
apoptosis PFAM PF00931
ATP-DEPENDENT CLP PROTEASE Panther PTHR11638
Apoptotic ATPase KOG KOG4658
Disease resistance protein (TIR-NBS-LRR class) family AT AT5G36930

Glyma01g27470

Cytochrome P450 PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
Cytochrome P450 CYP4/CYP19/CYP26 subfamilies KOG KOG0157
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen PFAM PF00067
CYTOCHROME P450 Panther PTHR19383
Cytochrome P450 CYP4/CYP19/CYP26 subfamilies KOG KOG0157
cytochrome P450, family 94, subfamily B, polypeptide 3 AT AT3G48520

Glyma01g27490

POT family PFAM PF00854
OLIGOPEPTIDE TRANSPORTER-RELATED Panther PTHR11654
H+/oligopeptide symporter KOG KOG1237
Major Facilitator Superfamily PFAM PF07690
oligopeptide transport PFAM PF00854
OLIGOPEPTIDE TRANSPORTER-RELATED Panther PTHR11654
H+/oligopeptide symporter KOG KOG1237
peptide transporter 1 AT AT3G54140

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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