Genes Covered By A Chromosome Alteration FN0176202.01.01.M4.2

Gene Name

Gene Annotation

Glyma01g23726

SPT2 chromatin protein PFAM PF08243
UNCHARACTERIZED Panther PTHR22691:SF3
SPT2 chromatin protein AT AT4G37860

Glyma01g23790

Phosphoenolpyruvate carboxykinase PFAM PF01293
Phosphoenolpyruvate carboxykinase (ATP). EC 4.1.1.49
E4.1.1.49, pckA; phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49 ] [COG:COG1866 ] [GO:0004612 ] KO K01610
purine nucleotide binding GO GO:0017076
cellular_component GO GO:0005575
phosphoenolpyruvate carboxykinase activity GO GO:0004611
cytosol GO GO:0005829
defense response to fungus, incompatible interaction GO GO:0009817
nucleus GO GO:0005634
cellular response to phosphate starvation GO GO:0016036
membrane GO GO:0016020
nucleolus GO GO:0005730
response to cadmium ion GO GO:0046686
gluconeogenesis GO GO:0006094
ATP binding GO GO:0005524
phosphoenolpyruvate carboxykinase (ATP) activity GO GO:0004612
Activity=phosphoenolpyruvate carboxykinase (ATP); Pathway=gluconeogenesis I SoyCyc GLUCONEO-PWY
Activity=phosphoenolpyruvate carboxykinase (ATP); Pathway=superpathway of glyoxylate cycle and fatty acid degradation SoyCyc PWY-561
Activity=phosphoenolpyruvate carboxykinase ATP; Pathway=Gluconeogenesis SoyCyc GLUCONEO-PWY
Activity=phosphoenolpyruvate carboxykinase ATP; Pathway=superpathway of glyoxylate cycle SoyCyc PWY-561
phosphoenolpyruvate carboxykinase (ATP) activity PFAM PF01293
phosphoenolpyruvate carboxykinase (ATP) EC 4.1.1.49
phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49] KO K01610
phosphoenolpyruvate carboxykinase 1 AT AT4G37870

Glyma01g23820

Dihydrouridine synthase (Dus) PFAM PF01207
TRNA-DIHYDROURIDINE SYNTHASE Panther PTHR11082
Oxidoreductases. EC 1.-.-.-
DUS2; tRNA-dihydrouridine synthase 2 [EC:1.-.-.- ] [COG:COG0042 ] [GO:0017150 ] KO K05543
tRNA dihydrouridine synthase activity PFAM PF01207
tRNA dihydrouridine synthase activity Panther PTHR11082
Oxidoreductases. EC 1.-.-.-
tRNA-dihydrouridine synthase 2 [EC:1.-.-.-] KO K05543
Aldolase-type TIM barrel family protein AT AT3G49640

Glyma01g23830

Zinc finger, C3HC4 type (RING finger) PFAM PF00097
MACROPHAGE ERYTHROBLAST ATTACHER-RELATED Panther PTHR12170
Predicted E3 ubiquitin ligase KOG KOG2817
Ran binding protein in the microtubule-organising centre PFAM PF10607
MACROPHAGE ERYTHROBLAST ATTACHER-RELATED Panther PTHR12170
Predicted E3 ubiquitin ligase KOG KOG2817
LisH/CRA/RING-U-box domains-containing protein AT AT4G37880

Glyma01g23840

RNApolymerase sigma-subunit C AT AT3G53920

Glyma01g23870

von Willebrand factor type A domain PFAM PF00092
Predicted E3 ubiquitin ligase KOG KOG0320
Zinc finger, C3HC4 type (RING finger) PFAM PF00097
protein binding PFAM PF00092
Predicted E3 ubiquitin ligase KOG KOG0320
Zinc finger (C3HC4-type RING finger) family protein AT AT2G22680

Glyma01g24100

AUX/IAA family PFAM PF02309
nucleus PFAM PF02309
indole-3-acetic acid inducible 9 AT AT5G65670

Glyma01g24115

Glyma01g24130

UNCHARACTERIZED Panther PTHR12570
Protein of unknown function (DUF803) PFAM PF05653
UNCHARACTERIZED Panther PTHR12570
Protein of unknown function (DUF803) AT AT1G34470

Glyma01g24136

calcium-dependent phospholipid binding PFAM PF00191
calcium-dependent phospholipid binding Panther PTHR10502
annexin 5 AT AT1G68090

Glyma01g24143

Glyma01g24150

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
protein kinase 1B AT AT2G28930

Glyma01g24160

Glyma01g24360

haloacid dehalogenase-like hydrolase PFAM PF00702
2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 Panther PTHR18901
Haloacid dehalogenase-like hydrolase KOG KOG3109
2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2 Panther PTHR18901
Haloacid dehalogenase-like hydrolase KOG KOG3109
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein AT AT5G02230

Glyma01g24383

Glyma01g24406

hydrolase activity PFAM PF02230
UNCHARACTERIZED Panther PTHR12277
alpha/beta-Hydrolases superfamily protein AT AT5G14390

Glyma01g24430

DHHC zinc finger domain PFAM PF01529
ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN Panther PTHR22883
Predicted DHHC-type Zn-finger protein KOG KOG1315
zinc ion binding PFAM PF01529
ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN Panther PTHR22883
Predicted DHHC-type Zn-finger protein KOG KOG1315
DHHC-type zinc finger family protein AT AT3G09320

Glyma01g24455

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR) superfamily protein AT AT5G03800

Glyma01g24480

Glyma01g24495

AT AT1G53035

Glyma01g24510

Protein tyrosine kinase PFAM PF07714
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED Panther PTHR22982
Serine/threonine-protein kinase involved in autophagy KOG KOG0595
non-specific serine/threonine protein kinase EC 2.7.11.1
unc51-like kinase [EC:2.7.11.1] KO K08269
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE-RELATED Panther PTHR22982
Serine/threonine-protein kinase involved in autophagy KOG KOG0595
non-specific serine/threonine protein kinase EC 2.7.11.1
unc51-like kinase [EC:2.7.11.1] KO K08269
Protein kinase superfamily protein AT AT2G37840

Glyma01g24515

ZINC FINGER PROTEIN Panther PTHR11697:SF19
TTF-type zinc finger protein with HAT dimerisation domain AT AT4G10200

Glyma01g24520

Phosphoribosyl transferase domain PFAM PF00156
URIDINE KINASE RELATED Panther PTHR10285
Predicted uracil phosphoribosyltransferase KOG KOG1017
Uracil phosphoribosyltransferase. EC 2.4.2.9
E2.4.2.9, upp; uracil phosphoribosyltransferase [EC:2.4.2.9 ] [COG:COG0035 ] [GO:0004845 ] KO K00761
Activity=uracil phosphoribosyltransferase; Pathway=pyrimidine salvage pathway SoyCyc PWYQT-4445
Activity=uracil phosphoribosyltransferase; Pathway=salvage pathways of pyrimidine ribonucleotides SoyCyc PWY0-163
Activity=uracil phosphoribosyltransferase; Pathway=salvage pathways of pyrimidine ribonucleotides SoyCyc PWY0-163
nucleoside metabolic process PFAM PF00156
URIDINE KINASE RELATED Panther PTHR10285
Predicted uracil phosphoribosyltransferase KOG KOG1017
uracil phosphoribosyltransferase EC 2.4.2.9
uracil phosphoribosyltransferase [EC:2.4.2.9] KO K00761
uracil phosphoribosyltransferase AT AT3G53900

Glyma01g24530

Amino acid kinase family PFAM PF00696
GLUTAMATE SEMIALDEHYDE DEHYDROGENASE Panther PTHR11063
Gamma-glutamyl phosphate reductase KOG KOG4165
Activity=γ-glutamyl_phosphate_reductase; Pathway=proline biosynthesis I SoyCyc PROSYN-PWY
cellular amino acid biosynthetic process PFAM PF00696
oxidoreductase activity PFAM PF00171
GLUTAMATE SEMIALDEHYDE DEHYDROGENASE Panther PTHR11063
Gamma-glutamyl phosphate reductase KOG KOG4165
glutamate-5-semialdehyde dehydrogenase EC 1.2.1.41
glutamate 5-kinase EC 2.7.2.11
delta-1-pyrroline-5-carboxylate synthetase [EC:2.7.2.11 1.2.1.41] KO K12657
delta 1-pyrroline-5-carboxylate synthase 2 AT AT3G55610

Glyma01g24536

binding PFAM PF00139
Protein tyrosine kinase PFAM PF07714
protein phosphorylation PFAM PF00069
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Concanavalin A-like lectin protein kinase family protein AT AT3G55550

Glyma01g24543

Cyclin, N-terminal domain PFAM PF00134
CYCLINS Panther PTHR10177
G1/S-specific cyclin D KOG KOG0656
CYCLIN D7;1 AT AT5G02110

Glyma01g24550

Protein of unknown function (DUF3743) PFAM PF12554
AtGCP3 interacting protein 1 AT AT4G09550

Glyma01g24570

Vacuolar import and degradation protein PFAM PF09783
Vacuolar import and degradation protein PFAM PF09783
AT AT2G37680

Glyma01g24580

F-BOX/LEUCINE RICH REPEAT PROTEIN Panther PTHR23125
F-BOX/LEUCINE RICH REPEAT PROTEIN Panther PTHR23125
RNI-like superfamily protein AT AT3G48880

Glyma01g24601

oxidoreductase activity PFAM PF02910
SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT Panther PTHR11632
succinate dehydrogenase 1-1 AT AT5G66760
succinate dehydrogenase 1-2 AT AT2G18450

Glyma01g24620

protein binding PFAM PF07646
BRI1 suppressor 1 (BSU1)-like 2 AT AT1G08420

Glyma01g24650

Uncharacterised protein family (UPF0160) PFAM PF03690
METAL DEPENDENT HYDROLASE - RELATED Panther PTHR11215
Predicted metal-binding protein KOG KOG2948
Uncharacterised protein family (UPF0160) PFAM PF03690
METAL DEPENDENT HYDROLASE - RELATED Panther PTHR11215
Predicted metal-binding protein KOG KOG2948
Metal-dependent protein hydrolase AT AT5G41970

Glyma01g24670

Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
binding PFAM PF00139
protein phosphorylation PFAM PF00069
Protein tyrosine kinase PFAM PF07714
SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE Panther PTHR23258
Serine/threonine protein kinase KOG KOG1187
Concanavalin A-like lectin protein kinase family protein AT AT3G55550

Glyma01g24680

FAMILY NOT NAMED Panther PTHR23046
'de novo' IMP biosynthetic process PFAM PF00731
PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE CATALYTIC SUBUNIT Panther PTHR23046
phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative AT AT2G37690

Glyma01g24710

Protein of unknown function (DUF668) PFAM PF05003
Domain of unknown function (DUF3475) PFAM PF11961
Protein of unknown function (DUF668) PFAM PF05003
Protein of unknown function (DUF668) AT AT3G23160

Glyma01g24715

KINESIN 5 - RELATED Panther PTHR16012:SF111

Glyma01g24720

Rho GTPase activation protein (RhoGAP) with PH domain AT AT5G19390

Glyma01g24735

aminoacyl-tRNA ligase activity Panther PTHR22594
Class II aminoacyl-tRNA and biotin synthetases superfamily protein AT AT5G56680

Glyma01g24750

NmrA-like family PFAM PF05368
NmrA-like family PFAM PF05368
NmrA-like negative transcriptional regulator family protein AT AT4G34540

Glyma01g24771

Myb-like DNA-binding domain PFAM PF00249
MYB-RELATED Panther PTHR10641
myb domain protein 305 AT AT3G24310

Glyma01g24790

Cleavage site for pathogenic type III effector avirulence factor Avr PFAM PF05627
Cleavage site for pathogenic type III effector avirulence factor Avr PFAM PF05627
RPM1-interacting protein 4 (RIN4) family protein AT AT5G55850

Glyma01g24801

BED FINGER-RELATED Panther PTHR23272
BED zinc finger ;hAT family dimerisation domain AT AT3G42170

Glyma01g24811

NADH dehydrogenase (ubiquinone) activity PFAM PF00361
NADH DEHYDROGENASE CHAIN 2 (SUBUNIT B) Panther PTHR22773:SF27
NADH-Ubiquinone/plastoquinone (complex I) protein AT ATCG00890

Glyma01g24820

Zinc finger, C2H2 type PFAM PF00096
Panther PTHR23224:SF80
zinc-finger protein 10 AT AT2G37740

Glyma01g24835

GDP-fucose protein O-fucosyltransferase PFAM PF10250
O-fucosyltransferase family protein AT AT1G62330
O-fucosyltransferase family protein AT AT1G29200

Glyma01g24850

Protein of unknown function, DUF604 PFAM PF04646
BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE RADICAL FRINGE Panther PTHR10811
Galactosyltransferases KOG KOG2246
PFAM PF02434
Protein of unknown function, DUF604 PFAM PF04646
BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE RADICAL FRINGE Panther PTHR10811
Galactosyltransferases KOG KOG2246
Protein of unknown function (DUF604) AT AT2G37730

Glyma01g24870

Protein of unknown function, DUF594 PFAM PF04578
Protein of unknown function, DUF594 PFAM PF04578
Protein of unknown function (DUF594) AT AT5G45540

Glyma01g24880

AT AT5G02090

Glyma01g24900

Domain of unknown function (DUF588) PFAM PF04535
Domain of unknown function (DUF588) PFAM PF04535
Uncharacterised protein family (UPF0497) AT AT3G53850

Glyma01g24915

Aldo/keto reductase family PFAM PF00248
oxidoreductase activity Panther PTHR11732
NAD(P)-linked oxidoreductase superfamily protein AT AT2G37770

Glyma01g24931

Aldo/keto reductase family PFAM PF00248
oxidoreductase activity Panther PTHR11732
Aldo/keto reductase family proteins KOG KOG1577
NAD(P)-linked oxidoreductase superfamily protein AT AT2G37770

Glyma01g24945

Glyma01g24960

ALDO/KETO REDUCTASE Panther PTHR11732
Aldo/keto reductase family PFAM PF00248
oxidoreductase activity Panther PTHR11732
NAD(P)-linked oxidoreductase superfamily protein AT AT2G37760

Glyma01g24975

Glyma01g24990

alpha/beta-Hydrolases superfamily protein AT AT1G15490

Glyma01g25000

Aldo/keto reductase family PFAM PF00248
ALDO/KETO REDUCTASE Panther PTHR11732
Aldo/keto reductase family proteins KOG KOG1577
Aldo/keto reductase family PFAM PF00248
oxidoreductase activity Panther PTHR11732
Aldo/keto reductase family proteins KOG KOG1577
NAD(P)-linked oxidoreductase superfamily protein AT AT2G37770

Glyma01g25010

Transketolase, C-terminal domain PFAM PF02780
DEHYDROGENASE RELATED Panther PTHR11624
Branched chain alpha-keto acid dehydrogenase E1, beta subunit KOG KOG0525
3-methyl-2-oxobutanoate dehydrogenase (lipoamide). EC 1.2.4.4
E1.2.4.4B, bkdA2; 2-oxoisovalerate dehydrogenase beta subunit [EC:1.2.4.4 ] [COG:COG0022 ] [GO:0003863 ] KO K00167
metabolic process GO GO:0008152
catalytic activity GO GO:0003824
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity GO GO:0003863
Activity=alpha-ketoacid dehydrogenase; Pathway=branched-chain α-keto acid dehydrogenase complex SoyCyc PWY-5046
Transketolase, pyrimidine binding domain PFAM PF02779
catalytic activity PFAM PF02780
DEHYDROGENASE RELATED Panther PTHR11624
Branched chain alpha-keto acid dehydrogenase E1, beta subunit KOG KOG0525
3-methyl-2-oxobutanoate dehydrogenase (lipoamide). EC 1.2.4.4
2-oxoisovalerate dehydrogenase E1 component, beta subunit [EC:1.2.4.4] KO K00167
branched-chain alpha-keto acid decarboxylase E1 beta subunit AT AT1G55510

Glyma01g25040

HEAT repeat PFAM PF02985
PROTEIN FOLDING REGULATOR Panther PTHR19316
Armadillo/beta-catenin-like repeat-containing protein KOG KOG2160
Nucleotide exchange factor Fes1 PFAM PF08609
protein binding PFAM PF02985
PROTEIN FOLDING REGULATOR Panther PTHR19316
Armadillo/beta-catenin-like repeat-containing protein KOG KOG2160
Fes1A AT AT3G09350

Glyma01g25116

cell redox homeostasis PFAM PF00085
PROTEIN DISULFIDE ISOMERASE Panther PTHR18929
thioredoxin family protein AT AT2G47470

Glyma01g25193

endoplasmic reticulum PFAM PF07749
thioredoxin family protein AT AT2G47470

Glyma01g25270

Auxin response factor PFAM PF06507
regulation of transcription, DNA-dependent PFAM PF02362
response to hormone stimulus PFAM PF06507
nucleus PFAM PF02309
auxin response factor 9 AT AT4G23980

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain