Genes Covered By A Chromosome Alteration FN0173659.04.M3.5

Gene Name

Gene Annotation

Glyma02g41660

Acyltransferase PFAM PF01553
Activity=1-acylglycerol-3-phosphate O-acyltransferase; Pathway=triacylglycerol biosynthesis SoyCyc TRIGLSYN-PWY
Activity=1-acylglycerol-3-phosphate O-acyltransferase; Pathway=phospholipid biosynthesis II SoyCyc PHOSLIPSYN2-PWY
Activity=1-acylglycerol-3-phosphate O-acyltransferase; Pathway=CDP-diacylglycerol biosynthesis I SoyCyc PWY-5667
Activity=1-acylglycerol-3-phosphate O-acyltransferase; Pathway=CDP-diacylglycerol biosynthesis II SoyCyc PWY0-1319
Activity=1-acylglycerol-3-phosphate O-acyltransferase; Pathway=phosphatidylglycerol biosynthesis I (plastidic) SoyCyc PWY4FS-7
Activity=1-acylglycerol-3-phosphate O-acyltransferase; Pathway=phosphatidylglycerol biosynthesis II (non-plastidic) SoyCyc PWY4FS-8
Activity=1-acylglycerol-3-phosphate O-acyltransferase; Pathway=CDP-diacylglycerol biosynthesis II SoyCyc PWY0-1319
Activity=1-acylglycerol-3-phosphate O-acyltransferase; Pathway=phospholipid biosynthesis II SoyCyc PHOSLIPSYN2-PWY
Activity=1-acylglycerol-3-phosphate O-acyltransferase; Pathway=CDP-diacylglycerol biosynthesis I SoyCyc PWY-5667
Activity=1-acylglycerol-3-phosphate O-acyltransferase; Pathway=triacylglycerol biosynthesis SoyCyc TRIGLSYN-PWY
acyltransferase activity PFAM PF01553
glycerol-3-phosphate 1-O-acyltransferase EC 2.3.1.15
glycerol-3-phosphate acyltransferase [EC:2.3.1.15] KO K13508
glycerol-3-phosphate acyltransferase 5 AT AT3G11430

Glyma02g41671

HSP40 Panther PTHR11821:SF29
RAD-like 6 AT AT1G75250

Glyma02g41680

Thaumatin family PFAM PF00314
Thaumatin family PFAM PF00314
Pathogenesis-related thaumatin superfamily protein AT AT5G02140

Glyma02g41700

ATPase family associated with various cellular activities (AAA) PFAM PF00004
26S proteasome regulatory complex, ATPase RPT4 KOG KOG0651
ATP binding PFAM PF00004
26S proteasome regulatory complex, ATPase RPT4 KOG KOG0651
rubisco activase AT AT2G39730

Glyma02g41710

Protein of unknown function DUF260 PFAM PF03195
Protein of unknown function DUF260 PFAM PF03195
LOB domain-containing protein 33 AT AT5G06080

Glyma02g41720

Domain of unknown function (DUF296) PFAM PF03479
Domain of unknown function (DUF296) PFAM PF03479
AT-hook motif nuclear-localized protein 20 AT AT4G14465

Glyma02g41730

Sec7 domain PFAM PF01369
GUANYL-NUCLEOTIDE EXCHANGE FACTOR Panther PTHR10663
Pattern-formation protein/guanine nucleotide exchange factor KOG KOG0928
ARF guanyl-nucleotide exchange factor activity PFAM PF01369
GUANYL-NUCLEOTIDE EXCHANGE FACTOR Panther PTHR10663
Pattern-formation protein/guanine nucleotide exchange factor KOG KOG0928
sec7 domain-containing protein AT AT1G13980

Glyma02g41750

Protein phosphatase 2C PFAM PF00481
PROTEIN PHOSPHATASE 2C Panther PTHR13832
Serine/threonine protein phosphatase KOG KOG0698
catalytic activity PFAM PF00481
PROTEIN PHOSPHATASE 2C Panther PTHR13832
Serine/threonine protein phosphatase KOG KOG0698
phosphoprotein phosphatase EC 3.1.3.16
protein phosphatase 2C [EC:3.1.3.16] KO K14497
protein phosphatase 2CA AT AT3G11410

Glyma02g41760

gb def: y73b6bl.18.p [caenorhabditis elegans] Panther PTHR12839:SF1
gb def: y73b6bl.18.p [caenorhabditis elegans] Panther PTHR12839:SF1
AT AT3G14900

Glyma02g41770

Methyltransferase domain PFAM PF08242
METHYLTRANSFERASE Panther PTHR10108
methyltransferase activity PFAM PF03141
methyltransferase activity PFAM PF08241
METHYLTRANSFERASE Panther PTHR10108
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein AT AT2G39750

Glyma02g41780

AT AT3G55570

Glyma02g41790

PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
PPR repeat PFAM PF01535
PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN Panther PTHR10483
Pentatricopeptide repeat (PPR-like) superfamily protein AT AT2G34400

Glyma02g41810

Regulator of chromosome condensation (RCC1) PFAM PF00415
REGULATOR OF CHROMOSOME CONDENSATION Panther PTHR22870
Uncharacterized conserved protein, contains RCC1 domain KOG KOG1427
Regulator of chromosome condensation (RCC1) repeat PFAM PF00415
REGULATOR OF CHROMOSOME CONDENSATION Panther PTHR22870
Uncharacterized conserved protein, contains RCC1 domain KOG KOG1427
Regulator of chromosome condensation (RCC1) family protein AT AT3G55580

Glyma02g41820

Bacterial transferase hexapeptide (three repeats) PFAM PF00132
SUGAR-1-PHOSPHATE GUANYL TRANSFERASE Panther PTHR22572
GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase KOG KOG1322
Activity=mannose-1-phosphate guanylyltransferase; Pathway=GDP-mannose biosynthesis SoyCyc PWY-5659
Activity=mannose-1-phosphate guanylyltransferase; Pathway=colanic acid building blocks biosynthesis SoyCyc COLANSYN-PWY
Activity=mannose-1-phosphate guanylyltransferase; Pathway=ascorbate biosynthesis I (L-galactose pathway) SoyCyc PWY-882
transferase activity GO GO:0016740
response to ammonium ion GO GO:0060359
response to ozone GO GO:0010193
response to salt stress GO GO:0009651
response to jasmonic acid stimulus GO GO:0009753
response to heat GO GO:0009408
defense response to bacterium GO GO:0042742
cellulose biosynthetic process GO GO:0030244
L-ascorbic acid biosynthetic process GO GO:0019853
mannose-1-phosphate guanylyltransferase activity GO GO:0004475
biosynthetic process GO GO:0009058
nucleotidyltransferase activity GO GO:0016779
Activity=mannose-1-phosphate guanylyltransferase; Pathway=GDP-mannose biosynthesis I SoyCyc PWY-5657
Activity=mannose-1-phosphate guanylyltransferase; Pathway=colanic acid building blocks biosynthesis SoyCyc COLANSYN-PWY
Activity=mannose-1-phosphate guanylyltransferase; Pathway=GDP-mannose biosynthesis II SoyCyc PWY-5659
biosynthetic process PFAM PF00483
Bacterial transferase hexapeptide (three repeats) PFAM PF00132
SUGAR-1-PHOSPHATE GUANYL TRANSFERASE Panther PTHR22572
GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase KOG KOG1322
Glucose-1-phosphate adenylyltransferase family protein AT AT2G39770

Glyma02g41830

Acetyltransferase (GNAT) family PFAM PF00583
HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT Panther PTHR12046
Histone acetyltransferase type b catalytic subunit KOG KOG2696
Histone acetyltransferase. EC 2.3.1.48
KO K00653
histone acetyltransferase activity PFAM PF10394
transferase activity, transferring acyl groups other than amino-acyl groups PFAM PF01853
HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT Panther PTHR12046
Histone acetyltransferase type b catalytic subunit KOG KOG2696
histone acetyltransferase EC 2.3.1.48
histone acetyltransferase 1 [EC:2.3.1.48] KO K11303
histone acetyltransferase of the GNAT family 2 AT AT5G56740

Glyma02g41840

Mitochondrial glycoprotein PFAM PF02330
MAM33, mitochondrial matrix glycoprotein KOG KOG2536
mitochondrial matrix PFAM PF02330
MAM33, mitochondrial matrix glycoprotein KOG KOG2536
Mitochondrial glycoprotein family protein AT AT3G55605

Glyma02g41850

Amino acid kinase family PFAM PF00696
GLUTAMATE SEMIALDEHYDE DEHYDROGENASE Panther PTHR11063
Gamma-glutamyl phosphate reductase KOG KOG4165
Activity=γ-glutamyl_phosphate_reductase; Pathway=proline biosynthesis I SoyCyc PROSYN-PWY
cellular amino acid biosynthetic process PFAM PF00696
oxidoreductase activity PFAM PF00171
GLUTAMATE SEMIALDEHYDE DEHYDROGENASE Panther PTHR11063
Gamma-glutamyl phosphate reductase KOG KOG4165
glutamate-5-semialdehyde dehydrogenase EC 1.2.1.41
glutamate 5-kinase EC 2.7.2.11
delta-1-pyrroline-5-carboxylate synthetase [EC:2.7.2.11 1.2.1.41] KO K12657
delta 1-pyrroline-5-carboxylate synthase 2 AT AT3G55610

Glyma02g41860

Yip1 domain PFAM PF04893
UNCHARACTERIZED Panther PTHR12822
Uncharacterized conserved protein KOG KOG3114
membrane PFAM PF04893
UNCHARACTERIZED Panther PTHR12822
Uncharacterized conserved protein KOG KOG3114
Integral membrane Yip1 family protein AT AT2G39805

Glyma02g41865

membrane PFAM PF03016
EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERASE)-RELATED Panther PTHR11062
Exostosin family protein AT AT4G38040

Glyma02g41870

FOLYLPOLYGLUTAMATE SYNTHASE-RELATED Panther PTHR11136
Folylpolyglutamate synthase KOG KOG2525
Activity=tetrahydrofolylpolyglutamate synthase; Pathway=folate polyglutamylation SoyCyc PWY-2161
Activity=tetrahydrofolylpolyglutamate synthase; Pathway=tetrahydrofolate biosynthesis II SoyCyc PWY-3742
Activity=tetrahydrofolylpolyglutamate synthase; Pathway=folate polyglutamylation I SoyCyc PWY-2161
Activity=tetrahydrofolylpolyglutamate synthase; Pathway=formylTHF biosynthesis II SoyCyc PWY-3841
Activity=tetrahydrofolylpolyglutamate synthase; Pathway=tetrahydrofolate biosynthesis II SoyCyc PWY-3742
Activity=tetrahydrofolylpolyglutamate synthase; Pathway=folate polyglutamylation II SoyCyc PWY-2161B
biosynthetic process PFAM PF08245
tetrahydrofolylpolyglutamate synthase activity Panther PTHR11136
Folylpolyglutamate synthase KOG KOG2525
DHFS-FPGS homolog B AT AT5G05980

Glyma02g41880

WD domain, G-beta repeat PFAM PF00400
WD40 REPEAT PROTEIN Panther PTHR22847
Nuclear protein COP1 KOG KOG4378
WD domain, G-beta repeat PFAM PF00400
WD40 REPEAT PROTEIN Panther PTHR22847
Nuclear protein COP1 KOG KOG4378
Transducin/WD40 repeat-like superfamily protein AT AT5G05970

Glyma02g41890

Calcineurin-like phosphoesterase PFAM PF00149
SERINE/THREONINE PROTEIN PHOSPHATASE Panther PTHR11668
Serine/threonine specific protein phosphatase PP1, catalytic subunit KOG KOG0374
protein dephosphorylation GO GO:0006470
biological_process GO GO:0008150
protein phosphatase type 1 complex GO GO:0000164
protein serine/threonine phosphatase activity GO GO:0004722
hydrolase activity PFAM PF00149
SERINE/THREONINE PROTEIN PHOSPHATASE Panther PTHR11668
Serine/threonine specific protein phosphatase PP1, catalytic subunit KOG KOG0374
phosphoprotein phosphatase EC 3.1.3.16
protein phosphatase 1, catalytic subunit [EC:3.1.3.16] KO K06269
type one serine/threonine protein phosphatase 4 AT AT2G39840

Glyma02g41900

Sof1-like domain PFAM PF04158
U3 SMALL NUCLEOLAR RNA (U3 SNORNA) ASSOCIATED PROTEIN Panther PTHR22851
Sof1-like rRNA processing protein (contains WD40 repeats) KOG KOG0268
WD domain, G-beta repeat PFAM PF00400
Eukaryotic translation initiation factor eIF2A PFAM PF08662
Sof1-like domain PFAM PF04158
U3 SMALL NUCLEOLAR RNA (U3 SNORNA) ASSOCIATED PROTEIN Panther PTHR22851
Sof1-like rRNA processing protein (contains WD40 repeats) KOG KOG0268
WD repeat and SOF domain-containing protein 1 KO K11806
nucleotide binding;protein binding AT AT4G28450

Glyma02g41920

LIM domain PFAM PF00412
LIM DOMAIN Panther PTHR18973
Adaptor protein Enigma and related PDZ-LIM proteins KOG KOG1703
zinc ion binding PFAM PF00412
Protein of unknown function (DUF3633) PFAM PF12315
LIM DOMAIN Panther PTHR18973
Adaptor protein Enigma and related PDZ-LIM proteins KOG KOG1703
DA1-related protein 2 AT AT2G39830

Glyma02g41930

Mitochondrial carrier protein PFAM PF00153
MITOCHONDRIAL CARRIER PROTEIN RELATED Panther PTHR11896
Mitochondrial solute carrier protein KOG KOG0752
Mitochondrial carrier protein PFAM PF00153
MITOCHONDRIAL CARRIER PROTEIN RELATED Panther PTHR11896
Mitochondrial solute carrier protein KOG KOG0752
Mitochondrial substrate carrier family protein AT AT3G55640

Glyma02g41940

Miro-like protein PFAM PF08477
RAS-RELATED GTPASE Panther PTHR11708
GTPase Rab11/YPT3, small G protein superfamily KOG KOG0087
cell plate GO GO:0009504
plasma membrane GO GO:0005886
endosome GO GO:0005768
protein transport GO GO:0015031
small GTPase mediated signal transduction GO GO:0007264
signal transduction GO GO:0007165
intracellular protein transport GO GO:0006886
nucleocytoplasmic transport GO GO:0006913
GTP binding GO GO:0005525
GTPase activity GO GO:0003924
GTP binding PFAM PF00025
Ras family PFAM PF00071
Miro-like protein PFAM PF08477
GTP binding PFAM PF00009
RAS-RELATED GTPASE Panther PTHR11708
GTPase Rab11/YPT3, small G protein superfamily KOG KOG0087
RAB GTPase homolog A2B AT AT1G07410

Glyma02g41950

PA domain PFAM PF02225
SUBTILISIN/KEXIN-RELATED SERINE PROTEASE Panther PTHR10795
identical protein binding PFAM PF05922
serine-type endopeptidase activity PFAM PF00082
SUBTILISIN/KEXIN-RELATED SERINE PROTEASE Panther PTHR10795
Subtilase family protein AT AT3G46850

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

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